mRNA_H-elongata_contig13508.2478.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A6H5KS35_9PHAE (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS35_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 7.940e-24 Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGE-EKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FFDK+ +R ++DSLL VGLDPHA+ELGE +AAGAK FCLR+I ATS++A+ YKPN AFFEAFG
Sbjct: 12 FFDKVASRVEEVDSLLMVGLDPHAEELGEGNNNAAGAKAFCLRIIAATSTVAVGYKPNAAFFEAFG 77
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A1F8SY17_9CHLR (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_47_9 TaxID=1797665 RepID=A0A1F8SY17_9CHLR) HSP 1 Score: 86.7 bits (213), Expect = 1.710e-20 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF+ L+ R Q+DSLLCVGLDPH +L +A GA+ FCL LI+ATS +A AYKPNIAFFEAFG
Sbjct: 3 FFEWLSQRVKQVDSLLCVGLDPHPDDLSAT-TADGAREFCLNLIHATSKVAAAYKPNIAFFEAFG 66
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A813JAL4_POLGL (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JAL4_POLGL) HSP 1 Score: 85.9 bits (211), Expect = 2.700e-20 Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF+KLT R ++DSLLC+GLDPH EL EE SA GA FC RLI T +A AYKPN AFFE +G
Sbjct: 12 FFEKLTRRCQEVDSLLCIGLDPHRSEL-EEDSAEGAFRFCQRLIEETKEVAAAYKPNAAFFEVYG 75
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: D8LJU0_ECTSI (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU0_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 5.610e-20 Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKS-AAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FFDK+ +R ++DSLL VGLDPHA ELGE + AAGAK FCLR+I +TS++A+ YKPN AFFEAFG
Sbjct: 12 FFDKIASRVEEVDSLLMVGLDPHAAELGEGNNHAAGAKAFCLRIIASTSTVAVGYKPNAAFFEAFG 77
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A835Z0K1_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K1_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.600e-20 Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FFDKL RA IDSLLCVGLDPH +L +KSA+GA FC RLI+AT+ +ALAYKPN AFFEAFG
Sbjct: 30 FFDKLAARARAIDSLLCVGLDPHVGQL-TDKSASGALAFCKRLIDATADVALAYKPNAAFFEAFG 93
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A7S2II38_9DINO (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2II38_9DINO) HSP 1 Score: 87.4 bits (215), Expect = 2.230e-19 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF+KLT R +DSLLCVGLDPH EL EE SA GA FC LI+AT IA AYKPN+AFFEA+G
Sbjct: 4 FFEKLTARVRVVDSLLCVGLDPHKSEL-EEDSAEGAYKFCAGLIDATKDIAAAYKPNVAFFEAYG 67
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A812TEB0_9DINO (Orotidine-5'-phosphate decarboxylase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TEB0_9DINO) HSP 1 Score: 86.3 bits (212), Expect = 6.230e-19 Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF+KLT RA +DSLLCVGLDPH EL EE SA GA FC RLI T + AYKPN AFFEA+G
Sbjct: 3 FFEKLTKRARDVDSLLCVGLDPHKAEL-EEDSAEGAFRFCSRLIEETKDLVAAYKPNAAFFEAYG 66
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: UPI0019E7AC47 (Orotidine 5'-phosphate decarboxylase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI0019E7AC47) HSP 1 Score: 82.0 bits (201), Expect = 7.210e-19 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF +L RA ++DSLLC+GLDPH EL S A + FC+RL+ ATS + LAYKPNIAFFE +G
Sbjct: 3 FFTRLEKRAREVDSLLCIGLDPHPGELSSPNSQA-VQDFCIRLVEATSDLVLAYKPNIAFFEVYG 66
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: X0T0U9_9ZZZZ (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0T0U9_9ZZZZ) HSP 1 Score: 84.7 bits (208), Expect = 7.600e-19 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FFD+LT R +DSLLCVGLDPH EL E +A AK FC+R+I+AT+ +A AYKPN AFFE FG
Sbjct: 3 FFDRLTQRIQAVDSLLCVGLDPHI-ELLSEPTAEAAKEFCMRIIDATAPLASAYKPNAAFFEVFG 66
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A2Z5XZX6_9DINO (Orotidine-5'-phosphate decarboxylase n=2 Tax=Symbiodinium sp. clade B TaxID=304322 RepID=A0A2Z5XZX6_9DINO) HSP 1 Score: 85.1 bits (209), Expect = 1.590e-18 Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
FF+KLT RA +IDSLLCVGLDPH EL +E SA GA FC LI T +A A+KPN AFFEA+G
Sbjct: 3 FFEKLTKRAKEIDSLLCVGLDPHKSEL-QEDSAEGAFRFCQHLIEETKDVACAFKPNAAFFEAYG 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13508.2478.1 >prot_H-elongata_contig13508.2478.1 ID=prot_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIback to top mRNA from alignment at H-elongata_contig13508:6787..6981- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13508.2478.1 ID=mRNA_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig13508:6787..6981- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13508:6787..6981- >mRNA_H-elongata_contig13508.2478.1 ID=mRNA_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig13508:6787..6981- (Himanthalia elongata Himel1 dioecious)back to top |