mRNA_H-elongata_contig13508.2478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13508.2478.1
Unique NamemRNA_H-elongata_contig13508.2478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A6H5KS35_9PHAE (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS35_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.940e-24
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGE-EKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FFDK+ +R  ++DSLL VGLDPHA+ELGE   +AAGAK FCLR+I ATS++A+ YKPN AFFEAFG
Sbjct:   12 FFDKVASRVEEVDSLLMVGLDPHAEELGEGNNNAAGAKAFCLRIIAATSTVAVGYKPNAAFFEAFG 77          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A1F8SY17_9CHLR (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_47_9 TaxID=1797665 RepID=A0A1F8SY17_9CHLR)

HSP 1 Score: 86.7 bits (213), Expect = 1.710e-20
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF+ L+ R  Q+DSLLCVGLDPH  +L    +A GA+ FCL LI+ATS +A AYKPNIAFFEAFG
Sbjct:    3 FFEWLSQRVKQVDSLLCVGLDPHPDDLSAT-TADGAREFCLNLIHATSKVAAAYKPNIAFFEAFG 66          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A813JAL4_POLGL (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JAL4_POLGL)

HSP 1 Score: 85.9 bits (211), Expect = 2.700e-20
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF+KLT R  ++DSLLC+GLDPH  EL EE SA GA  FC RLI  T  +A AYKPN AFFE +G
Sbjct:   12 FFEKLTRRCQEVDSLLCIGLDPHRSEL-EEDSAEGAFRFCQRLIEETKEVAAAYKPNAAFFEVYG 75          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: D8LJU0_ECTSI (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.610e-20
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKS-AAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FFDK+ +R  ++DSLL VGLDPHA ELGE  + AAGAK FCLR+I +TS++A+ YKPN AFFEAFG
Sbjct:   12 FFDKIASRVEEVDSLLMVGLDPHAAELGEGNNHAAGAKAFCLRIIASTSTVAVGYKPNAAFFEAFG 77          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A835Z0K1_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.600e-20
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FFDKL  RA  IDSLLCVGLDPH  +L  +KSA+GA  FC RLI+AT+ +ALAYKPN AFFEAFG
Sbjct:   30 FFDKLAARARAIDSLLCVGLDPHVGQL-TDKSASGALAFCKRLIDATADVALAYKPNAAFFEAFG 93          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A7S2II38_9DINO (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2II38_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 2.230e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF+KLT R   +DSLLCVGLDPH  EL EE SA GA  FC  LI+AT  IA AYKPN+AFFEA+G
Sbjct:    4 FFEKLTARVRVVDSLLCVGLDPHKSEL-EEDSAEGAYKFCAGLIDATKDIAAAYKPNVAFFEAYG 67          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A812TEB0_9DINO (Orotidine-5'-phosphate decarboxylase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TEB0_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 6.230e-19
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF+KLT RA  +DSLLCVGLDPH  EL EE SA GA  FC RLI  T  +  AYKPN AFFEA+G
Sbjct:    3 FFEKLTKRARDVDSLLCVGLDPHKAEL-EEDSAEGAFRFCSRLIEETKDLVAAYKPNAAFFEAYG 66          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: UPI0019E7AC47 (Orotidine 5'-phosphate decarboxylase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI0019E7AC47)

HSP 1 Score: 82.0 bits (201), Expect = 7.210e-19
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF +L  RA ++DSLLC+GLDPH  EL    S A  + FC+RL+ ATS + LAYKPNIAFFE +G
Sbjct:    3 FFTRLEKRAREVDSLLCIGLDPHPGELSSPNSQA-VQDFCIRLVEATSDLVLAYKPNIAFFEVYG 66          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: X0T0U9_9ZZZZ (Orotidine-5'-phosphate decarboxylase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0T0U9_9ZZZZ)

HSP 1 Score: 84.7 bits (208), Expect = 7.600e-19
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FFD+LT R   +DSLLCVGLDPH  EL  E +A  AK FC+R+I+AT+ +A AYKPN AFFE FG
Sbjct:    3 FFDRLTQRIQAVDSLLCVGLDPHI-ELLSEPTAEAAKEFCMRIIDATAPLASAYKPNAAFFEVFG 66          
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Match: A0A2Z5XZX6_9DINO (Orotidine-5'-phosphate decarboxylase n=2 Tax=Symbiodinium sp. clade B TaxID=304322 RepID=A0A2Z5XZX6_9DINO)

HSP 1 Score: 85.1 bits (209), Expect = 1.590e-18
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSIALAYKPNIAFFEAFG 195
            FF+KLT RA +IDSLLCVGLDPH  EL +E SA GA  FC  LI  T  +A A+KPN AFFEA+G
Sbjct:    3 FFEKLTKRAKEIDSLLCVGLDPHKSEL-QEDSAEGAFRFCQHLIEETKDVACAFKPNAAFFEAYG 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13508.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS35_9PHAE7.940e-2468.18Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectoc... [more]
A0A1F8SY17_9CHLR1.710e-2064.62Orotidine-5'-phosphate decarboxylase (Fragment) n=... [more]
A0A813JAL4_POLGL2.700e-2063.08Orotidine-5'-phosphate decarboxylase (Fragment) n=... [more]
D8LJU0_ECTSI5.610e-2066.67Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectoc... [more]
A0A835Z0K1_9STRA7.600e-2070.77Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribo... [more]
A0A7S2II38_9DINO2.230e-1967.69Orotidine-5'-phosphate decarboxylase (Fragment) n=... [more]
A0A812TEB0_9DINO6.230e-1966.15Orotidine-5'-phosphate decarboxylase n=1 Tax=Symbi... [more]
UPI0019E7AC477.210e-1958.46Orotidine 5'-phosphate decarboxylase n=1 Tax=Chlor... [more]
X0T0U9_9ZZZZ7.600e-1963.08Orotidine-5'-phosphate decarboxylase (Fragment) n=... [more]
A0A2Z5XZX6_9DINO1.590e-1864.62Orotidine-5'-phosphate decarboxylase n=2 Tax=Symbi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13508contigH-elongata_contig13508:6787..6981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog2880.D8LJU0
Preferred nameURA5
KEGG rclassRC00063,RC00409,RC00611
KEGG koko:K00762,ko:K01591,ko:K13421,ko:K15334
KEGG ReactionR00965,R01870,R08231
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00051
GOsGO:0003674,GO:0003824,GO:0004588,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019856,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' UMP biosynthetic process
EggNOG OGsCOG0461@1,KOG1377@2759
EC2.1.1.202,2.4.2.10,4.1.1.23
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.0543997-CDS-H-elongata_contig13508:6786..69811622929802.0543997-CDS-H-elongata_contig13508:6786..6981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13508 6787..6981 -
1691679162.9738934-CDS-H-elongata_contig13508:6786..69811691679162.9738934-CDS-H-elongata_contig13508:6786..6981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13508 6787..6981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13508.2478.1prot_H-elongata_contig13508.2478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13508 6787..6981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13508.2478.1

>prot_H-elongata_contig13508.2478.1 ID=prot_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
FFDKLTNRALQIDSLLCVGLDPHAQELGEEKSAAGAKHFCLRLINATSSI
ALAYKPNIAFFEAFG
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mRNA from alignment at H-elongata_contig13508:6787..6981-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13508.2478.1 ID=mRNA_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig13508:6787..6981- (Himanthalia elongata Himel1 dioecious)
TTCTTTGATAAGCTCACTAATCGAGCGCTGCAAATCGACTCACTACTCTG CGTGGGCCTTGATCCTCACGCACAGGAACTTGGCGAGGAAAAAAGCGCTG CTGGAGCTAAACATTTTTGCTTGAGGCTAATCAATGCCACTTCCAGCATT GCCCTTGCCTATAAGCCTAATATCGCCTTCTTCGAAGCCTTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig13508:6787..6981-

>mRNA_H-elongata_contig13508.2478.1 ID=mRNA_H-elongata_contig13508.2478.1|Name=mRNA_H-elongata_contig13508.2478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig13508:6787..6981- (Himanthalia elongata Himel1 dioecious)
TTCTTTGATAAGCTCACTAATCGAGCGCTGCAAATCGACTCACTACTCTG
CGTGGGCCTTGATCCTCACGCACAGGAACTTGGCGAGGAAAAAAGCGCTG
CTGGAGCTAAACATTTTTGCTTGAGGCTAATCAATGCCACTTCCAGCATT
GCCCTTGCCTATAAGCCTAATATCGCCTTCTTCGAAGCCTTCGGGTTCTT
TGATAAGCTCACTAATCGAGCGCTGCAAATCGACTCACTACTCTGCGTGG
GCCTTGATCCTCACGCACAGGAACTTGGCGAGGAAAAAAGCGCTGCTGGA
GCTAAACATTTTTGCTTGAGGCTAATCAATGCCACTTCCAGCATTGCCCT
TGCCTATAAGCCTAATATCGCCTTCTTCGAAGCCTTCGGG
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