mRNA_H-elongata_contig135003.2471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135003.2471.1
Unique NamemRNA_H-elongata_contig135003.2471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: D8LBA4_ECTSI (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA4_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 1.810e-89
Identity = 147/201 (73.13%), Postives = 159/201 (79.10%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADD-----ADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRA-GDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSA 585
            F+VIVAATAGSLGIGKNG LPWRLAADMAYFKRCTSTP+TS          DK+NAVIMGRKTWQSIP+RFRPL GRRN++LSRNP AR+ L LP  VLLAGSL EAL LL+ P   +EVDKVFVIGG SVYAEA+   LCEK+LLTSV    DGRFDDCD HFPAL P+ FKLVKKG  QEEKG E SFDEYE V  S A
Sbjct:   16 FVVIVAATAGSLGIGKNGALPWRLAADMAYFKRCTSTPTTSSGXXXXXXXTDKINAVIMGRKTWQSIPERFRPLAGRRNVVLSRNPAARDTLRLPKDVLLAGSLTEALDLLS-PAAASEVDKVFVIGGGSVYAEAVASELCEKVLLTSVTPPADGRFDDCDTHFPALDPDTFKLVKKGEAQEEKGVELSFDEYESVNHSEA 215          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A835Z035_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z035_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.070e-62
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRA-GDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSA 585
            F+V+VAATAGSLGIGK G +PW+LA DMAYFK+ TS       D A KVNAV+MGRKTW+SIP+RFRPL GR N++L+RNPRAR++L LP  V++A SL +ALS L+      +V K+FVIGG  VY EAL    C+++ LT+V A  DG+  +CD  FP L P +FKLV +G  Q E G ++ F+ YER   S+A
Sbjct:    8 FVVVVAATAGSLGIGKGGGIPWKLAGDMAYFKKVTSA-----CDIAGKVNAVVMGRKTWESIPQRFRPLPGRCNVVLTRNPRARQELVLPDDVIIARSLEDALSCLSTQDMRDKVHKIFVIGGGQVYKEALGMEQCKQVHLTTVEAPADGKQFECDTFFPPLDPASFKLVSRGDKQSENGIDYRFNVYERQDSSAA 198          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A4D9D1L8_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.100e-49
Identity = 97/196 (49.49%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKR---CTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGR---FDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERV 570
            F ++VAATA + GIGK G LPW L  DM +FKR   CTS P        DK+NAVIMGR+TWQSIP++FRPL  R N++LSRNP  RE L+LP  V +A SL  AL+LLA     + V+KVFVIGG++VY EA+    CE I  TS+    G    F DCD HFP +    + LV    V  +    F F  YER+
Sbjct:   28 FTIVVAATAKTFGIGKAGQLPWNLPQDMEHFKRLTACTSVP--------DKINAVIMGRRTWQSIPEKFRPLRNRLNVVLSRNPGIREQLNLPQGVRVATSLKAALALLAHGNDASVVEKVFVIGGAAVYREAVISEACEAIEFTSIEEKRGATPLFADCDAHFPVIPATEYCLVSSTPVLSQNALRFRFQRYERL 215          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2WWT1_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWT1_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.470e-49
Identity = 94/190 (49.47%), Postives = 120/190 (63.16%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERV 570
            F +IVAATA SLGIG+ G LPWRL  DMA+FKR T +    G       NAVIMGRKT+QSIP RFRPL GR N+++SRNP  R +L LP  VL+A SL +AL  L        V +V+VIGG S+Y EA+ +  C  +L+T V + +  F+DCD HFPA+    F L+       +KG   SF+ +ERV
Sbjct:    5 FDIIVAATASSLGIGRQGKLPWRLGVDMAFFKRATLSAGLPGQS-----NAVIMGRKTYQSIPARFRPLNGRVNVVISRNPEIRAELDLPAEVLVASSLDDALDQLGSSKVGQAVSQVYVIGGGSIYDEAVAHEACRHLLVTMVHSEE--FEDCDTHFPAIDTARFSLLSSSAPFTDKGVVCSFNVFERV 187          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A059WZ24_9BACT (Dihydrofolate reductase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059WZ24_9BACT)

HSP 1 Score: 171 bits (434), Expect = 4.440e-49
Identity = 93/205 (45.37%), Postives = 128/205 (62.44%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSAVGVTVTVPTQ 615
            F V+VAAT+ + GIG+ GTLPW++A DM +FK  TST S+       K+NAVIMGRKT++SIP +F+PL GR N+ILSRNP  R  L+LP SV +  +L++AL+LL        +D++FVIGG SVY EAL    C KI LT V        D D  FP ++   F++ ++G  +     ++ F EYE++  SS    T T PT+
Sbjct:    6 FSVVVAATSNTFGIGRKGTLPWKIAEDMEFFKTITSTASSG------KINAVIMGRKTYESIPAKFKPLSGRTNVILSRNPELRNVLNLPESVHVKSNLSDALNLLKEDQA---IDRIFVIGGESVYREALESKFCSKIYLTEVNTD---IPDIDTFFPVIRANVFRMTQRGEEKSNGELKYRFTEYEQIQPSS----TFTTPTE 194          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2MDM9_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.930e-47
Identity = 85/169 (50.30%), Postives = 117/169 (69.23%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLV 507
            F VIVAATA + GIG+ G LPW++  DMA+FKR T T    G      +NAVIMGRKT+QSIP RFRPL+GR N+++SRNP  R++L LP  VL+AGSL++AL+++        V +VFVIGG S+Y EA+   LC ++++T+V +    F+DCDV FP+L  + + L 
Sbjct:    4 FDVIVAATASTFGIGRRGRLPWKIGVDMAFFKRATLTCDMDGM-----MNAVIMGRKTYQSIPARFRPLQGRVNVVISRNPNLRQELELPDDVLVAGSLSDALAMIGEGTLNDRVSEVFVIGGGSIYEEAVKSQLCSRVVMTTVHSTG--FEDCDVSFPSLPSDEYILT 165          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: F0YJX9_AURAN (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX9_AURAN)

HSP 1 Score: 171 bits (432), Expect = 4.920e-47
Identity = 92/182 (50.55%), Postives = 110/182 (60.44%), Query Frame = 1
Query:   10 IVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFD 555
            IVAA AGS GIGK+GTLPW+LA DM YFK+ TS      A    K NA +MGRKTW SIP +FRPL GR+N++LSRNP ARE+L LPP V +  SL  A+  LA      ++ +VFVIGG  VYA AL    C K+LLTS+    G F DCD  FP      F     G    E G  + F+
Sbjct:   20 IVAAVAGSYGIGKDGTLPWKLAGDMKYFKKVTS------AAPEGKTNACVMGRKTWLSIPPKFRPLGGRKNVVLSRNPNAREELGLPPDVFVCPSLDAAVDALAGE---ADLGEVFVIGGGQVYASALADARCTKVLLTSIDDAAGAFADCDAVFPDPAKAGFASAASGEALVENGVAYRFE 192          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2MDD2_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDD2_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.020e-46
Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDV 468
            F VIVAATA + GIG+ G LPW++  DMA+FKR T T    G      +NAVIMGRKT+QSIP RFRPL+GR N+++SRNP  R++L LP  VL+AGSL++AL+++        V +VFVIGG S+Y EA+   LC ++++T+V +    F+D DV
Sbjct:    4 FDVIVAATASTFGIGRRGRLPWKIGVDMAFFKRATLTCDMDGM-----MNAVIMGRKTYQSIPARFRPLQGRVNVVISRNPNLRQELELPDDVLVAGSLSDALAMIGEGTLNDRVSEVFVIGGGSIYEEAVKSQLCSRVVMTTVHSTG--FEDSDV 152          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7R9UC25_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC25_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.610e-44
Identity = 92/192 (47.92%), Postives = 123/192 (64.06%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPP-HTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDD--CDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYER 567
            F+V+VAATA SLGIGK+G LPWR+  DM++FK+ TS     G       NAVIMGRKTW+SIP +FRPL GR NI+LSR+P +     LP  V +A SL EAL+++A    H  +V+ VFVIGG SVYA+AL  + C++I+LT V   +G  +D  CD   P +   A+  V +   Q ++   +SF  YER
Sbjct:   48 FVVVVAATASSLGIGKDGKLPWRIRGDMSFFKKLTSETRIPGHR-----NAVIMGRKTWESIPSKFRPLSGRLNIVLSRHPESLRG-QLPEQVAVASSLEEALAMVAPGGIHCDQVEDVFVIGGGSVYADALRSSYCKRIVLTEVTPLEGTEEDLGCDTFLPRIDGSAYMRVAESGDQVDENFRYSFVTYER 233          
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A059WZL2_9BACT (Dihydrofolate reductase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059WZL2_9BACT)

HSP 1 Score: 157 bits (396), Expect = 2.610e-43
Identity = 87/192 (45.31%), Postives = 118/192 (61.46%), Query Frame = 1
Query:    1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPD 576
            F ++VAAT  S GIG+ GT+PW+L  DM YFK  TST + + A  A   NAVIMG+KT+ SIP +FRPL GR N++LSR+   RE+L LP +VL A SL EAL LL+ P   + +D++FVIGG+SVY EAL    C  I LT +      + D D  FP +  + F L  + +V  E    + F  ++ V +
Sbjct:    4 FHLVVAATHVSQGIGRAGTIPWKLKGDMQYFKDVTSTVTKANA--ASLQNAVIMGKKTYLSIPVKFRPLVGRINVVLSRSSGVREELGLPDTVLTASSLEEALQLLSSPSVESRIDQIFVIGGASVYKEALESPRCGTIYLTKILK---EYPDMDTFFPIIPADKFTLTSRTQVTTENDISYQFCTFDPVEE 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA4_ECTSI1.810e-8973.13Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A835Z035_9STRA4.070e-6255.10Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A4D9D1L8_9STRA2.100e-4949.49Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A7S2WWT1_9STRA3.470e-4949.47Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A059WZ24_9BACT4.440e-4945.37Dihydrofolate reductase n=1 Tax=uncultured bacteri... [more]
A0A7S2MDM9_9STRA3.930e-4750.30Bifunctional dihydrofolate reductase-thymidylate s... [more]
F0YJX9_AURAN4.920e-4750.55Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A7S2MDD2_9STRA3.020e-4651.28Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A7R9UC25_9STRA3.610e-4447.92Bifunctional dihydrofolate reductase-thymidylate s... [more]
A0A059WZL2_9BACT2.610e-4345.31Dihydrofolate reductase n=1 Tax=uncultured bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135003contigH-elongata_contig135003:993..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.8
Seed ortholog evalue1.6e-74
Seed eggNOG ortholog2880.D8LBA4
Preferred nameTYMS
KEGG rclassRC00109,RC00110,RC00158,RC00219,RC00332
KEGG koko:K00287,ko:K00560,ko:K13998
KEGG ReactionR00936,R00937,R00939,R00940,R02101,R02235,R02236,R11765
KEGG Pathwayko00240,ko00670,ko00790,ko01100,ko01523,map00240,map00670,map00790,map01100,map01523
KEGG ModuleM00053,M00126,M00840,M00841
GOsGO:0000082,GO:0000083,GO:0000166,GO:0000278,GO:0000900,GO:0001101,GO:0001501,GO:0001889,GO:0002064,GO:0002065,GO:0002066,GO:0002069,GO:0002070,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004146,GO:0004633,GO:0004799,GO:0004857,GO:0005488,GO:0005515,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006066,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006231,GO:0006259,GO:0006355,GO:0006417,GO:0006575,GO:0006725,GO:0006729,GO:0006730,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007568,GO:0007584,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009059,GO:0009108,GO:0009112,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009150,GO:0009152,GO:0009157,GO:0009162,GO:0009163,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009256,GO:0009257,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009396,GO:0009605,GO:0009611,GO:0009636,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0014070,GO:0015936,GO:0015937,GO:0015949,GO:0016020,GO:0016032,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016740,GO:0016741,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0017148,GO:0018130,GO:0019048,GO:0019087,GO:0019088,GO:0019208,GO:0019212,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019751,GO:0019752,GO:0019842,GO:0019860,GO:0019866,GO:0020021,GO:0021700,GO:0022008,GO:0022402,GO:0023051,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030371,GO:0030855,GO:0031090,GO:0031099,GO:0031100,GO:0031102,GO:0031103,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0031427,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032553,GO:0032570,GO:0032768,GO:0032770,GO:0033189,GO:0033218,GO:0033273,GO:0033554,GO:0033560,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034248,GO:0034249,GO:0034311,GO:0034312,GO:0034399,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0035094,GO:0035295,GO:0035821,GO:0035999,GO:0036094,GO:0040007,GO:0042083,GO:0042221,GO:0042398,GO:0042493,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043085,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044003,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045182,GO:0045471,GO:0046073,GO:0046078,GO:0046104,GO:0046105,GO:0046120,GO:0046125,GO:0046126,GO:0046134,GO:0046146,GO:0046165,GO:0046173,GO:0046385,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046677,GO:0046683,GO:0046983,GO:0048037,GO:0048468,GO:0048469,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048545,GO:0048565,GO:0048583,GO:0048589,GO:0048666,GO:0048678,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050661,GO:0050662,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051216,GO:0051246,GO:0051248,GO:0051252,GO:0051341,GO:0051353,GO:0051384,GO:0051593,GO:0051701,GO:0051704,GO:0051716,GO:0051817,GO:0051870,GO:0051871,GO:0055086,GO:0055114,GO:0055123,GO:0060255,GO:0060429,GO:0060574,GO:0060575,GO:0060576,GO:0061008,GO:0061448,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0070402,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072341,GO:0072521,GO:0072522,GO:0072527,GO:0072528,GO:0080090,GO:0080134,GO:0080135,GO:0090079,GO:0090304,GO:0090322,GO:0090407,GO:0097159,GO:0097305,GO:0097327,GO:0097329,GO:0097367,GO:0097421,GO:0098772,GO:0120036,GO:1900407,GO:1901031,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901654,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1902882,GO:1903047,GO:1903506,GO:1990825,GO:2000112,GO:2000113,GO:2000121,GO:2000377,GO:2001141
EggNOG free text desc.thymidylate synthase activity
EggNOG OGsCOG0207@1,COG0262@1,KOG0673@2759,KOG1324@2759
EC1.5.1.3,2.1.1.45
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDihydrofolate reductase domain
Ec32 orthologEc-27_004630.1
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.2569177-CDS-H-elongata_contig135003:992..16191622929801.2569177-CDS-H-elongata_contig135003:992..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135003 993..1619 +
1691679162.6420937-CDS-H-elongata_contig135003:992..16191691679162.6420937-CDS-H-elongata_contig135003:992..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135003 993..1619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135003.2471.1prot_H-elongata_contig135003.2471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135003 993..1619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135003.2471.1

>prot_H-elongata_contig135003.2471.1 ID=prot_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVN
AVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLA
EALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGR
FDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSAVGVTV
TVPTQTLSS
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mRNA from alignment at H-elongata_contig135003:993..1619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135003.2471.1 ID=mRNA_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig135003:993..1619+ (Himanthalia elongata Himel1 dioecious)
TTTATCGTCATTGTCGCAGCCACCGCCGGCTCTCTGGGTATCGGCAAGAA CGGAACACTCCCATGGCGCCTTGCAGCAGATATGGCGTACTTCAAACGCT GTACCTCCACCCCGAGCACCTCCGGTGCCGACGACGCCGATAAGGTTAAT GCGGTCATCATGGGCCGGAAGACATGGCAGTCCATCCCAAAACGCTTCCG CCCATTGGAGGGTCGTCGAAATATCATTCTCAGCCGCAACCCGAGGGCCC GAGAAGACCTTTCCTTACCGCCGAGTGTCTTGCTGGCGGGAAGCCTTGCT GAGGCGTTGTCTCTGCTCGCCCGGCCGCCGCACACTACGGAAGTTGACAA AGTGTTCGTCATCGGTGGGAGTTCGGTTTACGCGGAGGCTCTGACATACA CGCTGTGCGAGAAAATATTGCTAACGTCGGTAAGGGCTGGTGACGGACGT TTCGACGACTGCGACGTCCACTTCCCCGCACTGAAGCCCGAGGCATTCAA ACTGGTAAAGAAGGGCCGAGTTCAAGAGGAGAAGGGGACTGAATTCTCTT TCGATGAGTACGAGAGGGTGCCCGATTCTTCGGCAGTGGGAGTGACGGTA ACGGTACCAACCCAGACCTTATCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig135003:993..1619+

>mRNA_H-elongata_contig135003.2471.1 ID=mRNA_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig135003:993..1619+ (Himanthalia elongata Himel1 dioecious)
TTTATCGTCATTGTCGCAGCCACCGCCGGCTCTCTGGGTATCGGCAAGAA
CGGAACACTCCCATGGCGCCTTGCAGCAGATATGGCGTACTTCAAACGCT
GTACCTCCACCCCGAGCACCTCCGGTGCCGACGACGCCGATAAGGTTAAT
GCGGTCATCATGGGCCGGAAGACATGGCAGTCCATCCCAAAACGCTTCCG
CCCATTGGAGGGTCGTCGAAATATCATTCTCAGCCGCAACCCGAGGGCCC
GAGAAGACCTTTCCTTACCGCCGAGTGTCTTGCTGGCGGGAAGCCTTGCT
GAGGCGTTGTCTCTGCTCGCCCGGCCGCCGCACACTACGGAAGTTGACAA
AGTGTTCGTCATCGGTGGGAGTTCGGTTTACGCGGAGGCTCTGACATACA
CGCTGTGCGAGAAAATATTGCTAACGTCGGTAAGGGCTGGTGACGGACGT
TTCGACGACTGCGACGTCCACTTCCCCGCACTGAAGCCCGAGGCATTCAA
ACTGGTAAAGAAGGGCCGAGTTCAAGAGGAGAAGGGGACTGAATTCTCTT
TCGATGAGTACGAGAGGGTGCCCGATTCTTCGGCAGTGGGAGTGACGGTA
ACGGTACCAACCCAGACCTTATCTTCCTTTATCGTCATTGTCGCAGCCAC
CGCCGGCTCTCTGGGTATCGGCAAGAACGGAACACTCCCATGGCGCCTTG
CAGCAGATATGGCGTACTTCAAACGCTGTACCTCCACCCCGAGCACCTCC
GGTGCCGACGACGCCGATAAGGTTAATGCGGTCATCATGGGCCGGAAGAC
ATGGCAGTCCATCCCAAAACGCTTCCGCCCATTGGAGGGTCGTCGAAATA
TCATTCTCAGCCGCAACCCGAGGGCCCGAGAAGACCTTTCCTTACCGCCG
AGTGTCTTGCTGGCGGGAAGCCTTGCTGAGGCGTTGTCTCTGCTCGCCCG
GCCGCCGCACACTACGGAAGTTGACAAAGTGTTCGTCATCGGTGGGAGTT
CGGTTTACGCGGAGGCTCTGACATACACGCTGTGCGAGAAAATATTGCTA
ACGTCGGTAAGGGCTGGTGACGGACGTTTCGACGACTGCGACGTCCACTT
CCCCGCACTGAAGCCCGAGGCATTCAAACTGGTAAAGAAGGGCCGAGTTC
AAGAGGAGAAGGGGACTGAATTCTCTTTCGATGAGTACGAGAGGGTGCCC
GATTCTTCGGCAGTGGGAGTGACGGTAACGGTACCAACCCAGACCTTATC
TTCC
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