mRNA_H-elongata_contig135003.2471.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: D8LBA4_ECTSI (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA4_ECTSI) HSP 1 Score: 283 bits (723), Expect = 1.810e-89 Identity = 147/201 (73.13%), Postives = 159/201 (79.10%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADD-----ADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRA-GDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSA 585
F+VIVAATAGSLGIGKNG LPWRLAADMAYFKRCTSTP+TS DK+NAVIMGRKTWQSIP+RFRPL GRRN++LSRNP AR+ L LP VLLAGSL EAL LL+ P +EVDKVFVIGG SVYAEA+ LCEK+LLTSV DGRFDDCD HFPAL P+ FKLVKKG QEEKG E SFDEYE V S A
Sbjct: 16 FVVIVAATAGSLGIGKNGALPWRLAADMAYFKRCTSTPTTSSGXXXXXXXTDKINAVIMGRKTWQSIPERFRPLAGRRNVVLSRNPAARDTLRLPKDVLLAGSLTEALDLLS-PAAASEVDKVFVIGGGSVYAEAVASELCEKVLLTSVTPPADGRFDDCDTHFPALDPDTFKLVKKGEAQEEKGVELSFDEYESVNHSEA 215
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A835Z035_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z035_9STRA) HSP 1 Score: 210 bits (535), Expect = 4.070e-62 Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRA-GDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSA 585
F+V+VAATAGSLGIGK G +PW+LA DMAYFK+ TS D A KVNAV+MGRKTW+SIP+RFRPL GR N++L+RNPRAR++L LP V++A SL +ALS L+ +V K+FVIGG VY EAL C+++ LT+V A DG+ +CD FP L P +FKLV +G Q E G ++ F+ YER S+A
Sbjct: 8 FVVVVAATAGSLGIGKGGGIPWKLAGDMAYFKKVTSA-----CDIAGKVNAVVMGRKTWESIPQRFRPLPGRCNVVLTRNPRARQELVLPDDVIIARSLEDALSCLSTQDMRDKVHKIFVIGGGQVYKEALGMEQCKQVHLTTVEAPADGKQFECDTFFPPLDPASFKLVSRGDKQSENGIDYRFNVYERQDSSAA 198
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A4D9D1L8_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L8_9STRA) HSP 1 Score: 177 bits (449), Expect = 2.100e-49 Identity = 97/196 (49.49%), Postives = 120/196 (61.22%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKR---CTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGR---FDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERV 570
F ++VAATA + GIGK G LPW L DM +FKR CTS P DK+NAVIMGR+TWQSIP++FRPL R N++LSRNP RE L+LP V +A SL AL+LLA + V+KVFVIGG++VY EA+ CE I TS+ G F DCD HFP + + LV V + F F YER+
Sbjct: 28 FTIVVAATAKTFGIGKAGQLPWNLPQDMEHFKRLTACTSVP--------DKINAVIMGRRTWQSIPEKFRPLRNRLNVVLSRNPGIREQLNLPQGVRVATSLKAALALLAHGNDASVVEKVFVIGGAAVYREAVISEACEAIEFTSIEEKRGATPLFADCDAHFPVIPATEYCLVSSTPVLSQNALRFRFQRYERL 215
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2WWT1_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWT1_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.470e-49 Identity = 94/190 (49.47%), Postives = 120/190 (63.16%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERV 570
F +IVAATA SLGIG+ G LPWRL DMA+FKR T + G NAVIMGRKT+QSIP RFRPL GR N+++SRNP R +L LP VL+A SL +AL L V +V+VIGG S+Y EA+ + C +L+T V + + F+DCD HFPA+ F L+ +KG SF+ +ERV
Sbjct: 5 FDIIVAATASSLGIGRQGKLPWRLGVDMAFFKRATLSAGLPGQS-----NAVIMGRKTYQSIPARFRPLNGRVNVVISRNPEIRAELDLPAEVLVASSLDDALDQLGSSKVGQAVSQVYVIGGGSIYDEAVAHEACRHLLVTMVHSEE--FEDCDTHFPAIDTARFSLLSSSAPFTDKGVVCSFNVFERV 187
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A059WZ24_9BACT (Dihydrofolate reductase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059WZ24_9BACT) HSP 1 Score: 171 bits (434), Expect = 4.440e-49 Identity = 93/205 (45.37%), Postives = 128/205 (62.44%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPDSSAVGVTVTVPTQ 615
F V+VAAT+ + GIG+ GTLPW++A DM +FK TST S+ K+NAVIMGRKT++SIP +F+PL GR N+ILSRNP R L+LP SV + +L++AL+LL +D++FVIGG SVY EAL C KI LT V D D FP ++ F++ ++G + ++ F EYE++ SS T T PT+
Sbjct: 6 FSVVVAATSNTFGIGRKGTLPWKIAEDMEFFKTITSTASSG------KINAVIMGRKTYESIPAKFKPLSGRTNVILSRNPELRNVLNLPESVHVKSNLSDALNLLKEDQA---IDRIFVIGGESVYREALESKFCSKIYLTEVNTD---IPDIDTFFPVIRANVFRMTQRGEEKSNGELKYRFTEYEQIQPSS----TFTTPTE 194
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2MDM9_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM9_9STRA) HSP 1 Score: 171 bits (434), Expect = 3.930e-47 Identity = 85/169 (50.30%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLV 507
F VIVAATA + GIG+ G LPW++ DMA+FKR T T G +NAVIMGRKT+QSIP RFRPL+GR N+++SRNP R++L LP VL+AGSL++AL+++ V +VFVIGG S+Y EA+ LC ++++T+V + F+DCDV FP+L + + L
Sbjct: 4 FDVIVAATASTFGIGRRGRLPWKIGVDMAFFKRATLTCDMDGM-----MNAVIMGRKTYQSIPARFRPLQGRVNVVISRNPNLRQELELPDDVLVAGSLSDALAMIGEGTLNDRVSEVFVIGGGSIYEEAVKSQLCSRVVMTTVHSTG--FEDCDVSFPSLPSDEYILT 165
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: F0YJX9_AURAN (Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX9_AURAN) HSP 1 Score: 171 bits (432), Expect = 4.920e-47 Identity = 92/182 (50.55%), Postives = 110/182 (60.44%), Query Frame = 1
Query: 10 IVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFD 555
IVAA AGS GIGK+GTLPW+LA DM YFK+ TS A K NA +MGRKTW SIP +FRPL GR+N++LSRNP ARE+L LPP V + SL A+ LA ++ +VFVIGG VYA AL C K+LLTS+ G F DCD FP F G E G + F+
Sbjct: 20 IVAAVAGSYGIGKDGTLPWKLAGDMKYFKKVTS------AAPEGKTNACVMGRKTWLSIPPKFRPLGGRKNVVLSRNPNAREELGLPPDVFVCPSLDAAVDALAGE---ADLGEVFVIGGGQVYASALADARCTKVLLTSIDDAAGAFADCDAVFPDPAKAGFASAASGEALVENGVAYRFE 192
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7S2MDD2_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDD2_9STRA) HSP 1 Score: 159 bits (401), Expect = 3.020e-46 Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDV 468
F VIVAATA + GIG+ G LPW++ DMA+FKR T T G +NAVIMGRKT+QSIP RFRPL+GR N+++SRNP R++L LP VL+AGSL++AL+++ V +VFVIGG S+Y EA+ LC ++++T+V + F+D DV
Sbjct: 4 FDVIVAATASTFGIGRRGRLPWKIGVDMAFFKRATLTCDMDGM-----MNAVIMGRKTYQSIPARFRPLQGRVNVVISRNPNLRQELELPDDVLVAGSLSDALAMIGEGTLNDRVSEVFVIGGGSIYEEAVKSQLCSRVVMTTVHSTG--FEDSDV 152
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A7R9UC25_9STRA (Bifunctional dihydrofolate reductase-thymidylate synthase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC25_9STRA) HSP 1 Score: 164 bits (414), Expect = 3.610e-44 Identity = 92/192 (47.92%), Postives = 123/192 (64.06%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPP-HTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDD--CDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYER 567
F+V+VAATA SLGIGK+G LPWR+ DM++FK+ TS G NAVIMGRKTW+SIP +FRPL GR NI+LSR+P + LP V +A SL EAL+++A H +V+ VFVIGG SVYA+AL + C++I+LT V +G +D CD P + A+ V + Q ++ +SF YER
Sbjct: 48 FVVVVAATASSLGIGKDGKLPWRIRGDMSFFKKLTSETRIPGHR-----NAVIMGRKTWESIPSKFRPLSGRLNIVLSRHPESLRG-QLPEQVAVASSLEEALAMVAPGGIHCDQVEDVFVIGGGSVYADALRSSYCKRIVLTEVTPLEGTEEDLGCDTFLPRIDGSAYMRVAESGDQVDENFRYSFVTYER 233
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Match: A0A059WZL2_9BACT (Dihydrofolate reductase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059WZL2_9BACT) HSP 1 Score: 157 bits (396), Expect = 2.610e-43 Identity = 87/192 (45.31%), Postives = 118/192 (61.46%), Query Frame = 1
Query: 1 FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNAVIMGRKTWQSIPKRFRPLEGRRNIILSRNPRAREDLSLPPSVLLAGSLAEALSLLARPPHTTEVDKVFVIGGSSVYAEALTYTLCEKILLTSVRAGDGRFDDCDVHFPALKPEAFKLVKKGRVQEEKGTEFSFDEYERVPD 576
F ++VAAT S GIG+ GT+PW+L DM YFK TST + + A A NAVIMG+KT+ SIP +FRPL GR N++LSR+ RE+L LP +VL A SL EAL LL+ P + +D++FVIGG+SVY EAL C I LT + + D D FP + + F L + +V E + F ++ V +
Sbjct: 4 FHLVVAATHVSQGIGRAGTIPWKLKGDMQYFKDVTSTVTKANA--ASLQNAVIMGKKTYLSIPVKFRPLVGRINVVLSRSSGVREELGLPDTVLTASSLEEALQLLSSPSVESRIDQIFVIGGASVYKEALESPRCGTIYLTKILK---EYPDMDTFFPIIPADKFTLTSRTQVTTENDISYQFCTFDPVEE 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135003.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135003.2471.1 >prot_H-elongata_contig135003.2471.1 ID=prot_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp FIVIVAATAGSLGIGKNGTLPWRLAADMAYFKRCTSTPSTSGADDADKVNback to top mRNA from alignment at H-elongata_contig135003:993..1619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135003.2471.1 ID=mRNA_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig135003:993..1619+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135003:993..1619+ >mRNA_H-elongata_contig135003.2471.1 ID=mRNA_H-elongata_contig135003.2471.1|Name=mRNA_H-elongata_contig135003.2471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig135003:993..1619+ (Himanthalia elongata Himel1 dioecious)back to top |