mRNA_H-elongata_contig13465.2454.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: D7FLF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF3_ECTSI) HSP 1 Score: 305 bits (780), Expect = 3.790e-98 Identity = 144/180 (80.00%), Postives = 168/180 (93.33%), Query Frame = 1
Query: 1 DFPELAGEISGMDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVTRAPDDGPIEDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESGD 540
DFPE+AG I+GMDDPA+APWRL+AE+I+R+QV+ CGLTCYDILWTFHRLEVTVTRA DGPIE++AYVDSDKLM+AIK VN ALE REEELFVLGRHEL+VATPG+KDVLTT+K+FKA+KGF++IVK GGPFK KR+L GKLLERTFDEL+I ++GR VR+PLALVDEVRLPPALVE+GD
Sbjct: 180 DFPEVAGVIAGMDDPADAPWRLEAEKIVRDQVQACGLTCYDILWTFHRLEVTVTRAEGDGPIEEAAYVDSDKLMQAIKGVNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELKGKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGD 359
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A836C944_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C944_9STRA) HSP 1 Score: 237 bits (605), Expect = 1.060e-71 Identity = 115/182 (63.19%), Postives = 147/182 (80.77%), Query Frame = 1
Query: 1 DFPELAGEISGMDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVTRA--PDDGPIEDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESGD 540
++PE+AG+ GMDDP +APWR +AE IIR +V+ GL CYDI+W+FH+LEVTVTR P+D E++ YVDSD LM+AI+ VN ALE+ EE L+VLGRHELI+ATPG+KD+LTT++EFKAFKGFD++V TG +R++ GKL ERTFDELV+ Q GR VR+PLALVDEVRLP A +E G+
Sbjct: 190 EWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDS--EEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGE 369
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A4D9D4Q5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4Q5_9STRA) HSP 1 Score: 144 bits (362), Expect = 7.350e-36 Identity = 77/195 (39.49%), Postives = 110/195 (56.41%), Query Frame = 1
Query: 4 FPELAGEISGMDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVTRAPDDGPIE-------DSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLH---GKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESGDTSILSK 558
PE GE GMDDP +APWRL+AE +IR V G YD+ W H + V +TR D G +E D+ + SD+++E + V AL + L VL R L V TPG+KDVLTT +EF+AF+G+++ V P + G+LLER ++N G+ V +P +V EVRLP A+ E+ D ++ +
Sbjct: 117 IPEYGGEFLGMDDPLDAPWRLQAEEVIRGAVTEAGYHTYDVTWHLHHVNVDITRQ-DGGNVESEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRVLQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMDE 310
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: W7TJE5_9STRA (Ribosome maturation factor rimp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJE5_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.640e-34 Identity = 76/195 (38.97%), Postives = 109/195 (55.90%), Query Frame = 1
Query: 4 FPELAGEISGMDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVTRAPDDGPIE-------DSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLH---GKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESGDTSILSK 558
PE GE GMDDP +APWRL AE +IR V G YD+ W H + V +TR D G +E D+ + SD+++E + V AL + L +L R L V TPG+KDVLTT +EF+AF+G+++ V P + G+LLER ++N G+ V +P +V EVRLP A+ E+ D ++ +
Sbjct: 227 IPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQ-DVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEE 420
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S2SW06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW06_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.350e-32 Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 1
Query: 10 ELAGEISGMDDPAEAPWRLKAERIIREQVK-ICGLTCYDILWTFHRLEVTVTRAPDDGPIEDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGP--FKNKRQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVE 531
++ G ++G+DDP + WRLKAE ++R V+ + G+ YD+ W L+V + + D+G D V++ A + + ALE +EEL +L RHEL V++ G+K++L + +EF+AFKGFD++VKT P + L+GKL+ R E IN GR VR+P LV+EVRLP A E
Sbjct: 121 KVYGIMNGLDDPRDVFWRLKAEELVRGAVRPLAGVRIYDVCWNIATLQVLLEQETDEGGAVDLKVVET-----AHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEE 292
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S1TZY1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY1_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.830e-25 Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 1
Query: 19 GEISGMDDPAEAPWRLKAERIIREQVK--ICGLTCYDILWTFHRLEVTVTRAPDDGPIEDSAYVDSDKLMEAIKR-VNTALEEREEEL---FVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNK-------RQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESGD 540
G GMDDP +APWRL+A I E VK D+LW F +++TVT P ED+ S ++E + R ++ L E EL L H L V TPG+ +V+TT ++F+A+KGF + V T G K+ + L G L RT +E+ +NQ GR V+VP+A+V EVRLP +E+GD
Sbjct: 96 GPALGMDDPLDAPWRLEAAAEIEELVKEKYPDAQAVDVLWAFSNVQITVT------PKEDANVPLSSAVIEMLTRAISDDLFPAEPELAHDHWLTMHALSVCTPGASNVITTQEQFEAYKGFQVDVVTLGMPKSDGFAGVPGKTLTGTLHGRTTEEVHLNQKGRIVKVPIAMVSEVRLPEPELENGD 276
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S2SV25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV25_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.760e-24 Identity = 62/156 (39.74%), Postives = 94/156 (60.26%), Query Frame = 1
Query: 73 ERIIREQVK-ICGLTCYDILWTFHRLEVTVTRAPDDGPIEDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGP--FKNKRQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVE 531
+ ++R V+ + G+ YD+ W L+V + + D+G D V++ A + + ALE +EEL +L RHEL V++ G+K++L + +EF+AFKGFD++VKT P + L+GKL+ R E IN GR VR+P LV+EVRLP A E
Sbjct: 12 QELVRGAVRPLAGVRIYDVCWNIATLQVLLEQETDEGGAVDLKVVET-----AHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEE 162
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S1DE94_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE94_CYCTE) HSP 1 Score: 106 bits (264), Expect = 3.120e-24 Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 187 EDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLHGKLLERTFDELVINQSGRTVRVPLALVDEVRLPPALVESG 537
+ + VD+ K+ K + L+ +E L +L RHELI+ATPG+ D L T ++F A++GFD+IV+T PF + R L GKL+ER +L+I + GR V +PL V VRLPPA E G
Sbjct: 13 DGAMVVDTSKISVIAKYILKGLDSQEHRLRILDRHELILATPGAPDTLETQRQFDAYRGFDVIVETVDPFNSNRVLTGKLVERNSMDLIIRKKGRMVTIPLNFVSSVRLPPAKREKG 129
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S2D135_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D135_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.020e-23 Identity = 59/167 (35.33%), Postives = 95/167 (56.89%), Query Frame = 1
Query: 19 GEISGMDDPAEAPWRLKAERIIREQVK-ICGLTCYDILWTFHRLEVTVTRAPDDGPIEDSAYVDSDKLMEAIKRVNTALEEREEELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQ-LHGKLLERTFDELVINQSGRTVRVPLALVDEVRL 513
G+++G+DDP + WR++ + +IRE + + G++ YDI W L V + +ED +++ K + LE ++EL +L RH L V++ G DVLT ++F FKGF++ V T F ++R + G+L+ R E INQ GR V++P V+EVRL
Sbjct: 114 GDMNGLDDPRDVEWRIRGQDLIREAIAPLNGISVYDITWNIGDLTVFIENEESGVSMED--------IIDCTKAIQDTLEPFDDELEILSRHTLEVSSKGIDDVLTAERQFITFKGFEVAVSTISTFSDRRAPILGRLVGRDVHETTINQKGRMVKIPNFYVEEVRL 272
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Match: A0A7S2PI76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PI76_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.720e-23 Identity = 66/187 (35.29%), Postives = 95/187 (50.80%), Query Frame = 1
Query: 7 PELAGEISGMDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVT--------------------------RAPDDGPIEDSAYVDSDKLMEAIKRVNTALEEREE-ELFVLGRHELIVATPGSKDVLTTNKEFKAFKGFDIIVKTGGPFKNKRQLHGKLLERTFDELVINQSGRTVRVP 486
P G+ G DDP +APWR++ E+IIR+ + G D+ W VT++ R D + + A VD + + AL+E E+ +L VL RHE+IV +PG +VL T ++F AFKGFD+IV+T P + R+L GKLLERT + I Q G+ V +P
Sbjct: 38 PWRRGDPDGCDDPMDAPWRIEGEQIIRDAAESVGAVVEDVTWGMAMCTVTISDTTGVKKDTSEYLEERKKRDDEYPWMREERDAVVTEDA-VDMSGVGVVAGTIIEALQEAEDRDLDVLSRHEIIVTSPGVSNVLETQRQFDAFKGFDVIVQTIDPLGSNRRLEGKLLERTALDTFITQKGKKVTIP 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13465.2454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13465.2454.1 >prot_H-elongata_contig13465.2454.1 ID=prot_H-elongata_contig13465.2454.1|Name=mRNA_H-elongata_contig13465.2454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp MDDPAEAPWRLKAERIIREQVKICGLTCYDILWTFHRLEVTVTRAPDDGPback to top mRNA from alignment at H-elongata_contig13465:5916..8168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13465.2454.1 ID=mRNA_H-elongata_contig13465.2454.1|Name=mRNA_H-elongata_contig13465.2454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-elongata_contig13465:5916..8168- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13465:5916..8168- >mRNA_H-elongata_contig13465.2454.1 ID=mRNA_H-elongata_contig13465.2454.1|Name=mRNA_H-elongata_contig13465.2454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig13465:5916..8168- (Himanthalia elongata Himel1 dioecious)back to top |