mRNA_H-elongata_contig13459.2451.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.050e-26 Identity = 45/77 (58.44%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 VLQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
+ Q+D+ G ++ VTW+P +EGVLM +D+ PYY AYR FQ+++EEG YA+ +TVR +LKPGQC+VFNNRR++HGRE
Sbjct: 360 IFQLDANGELLAVTWAPMFEGVLMCQPQDVVPYYLAYREFQRLVEEGPYAESHTVRQRLKPGQCLVFNNRRMLHGRE 436
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A836C7R7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R7_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.380e-23 Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
++VD+ G I V W+P +EG L P +D+ PYYEAY FQ +E G +A+E+TVR +++PGQCMVFNNRR++HGRE
Sbjct: 336 IEVDTDGEITGVFWAPMFEGTLHVPSKDIQPYYEAYALFQAFLEVGDFAEEHTVRARMQPGQCMVFNNRRMLHGRE 411
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A7M7PNN2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PNN2_STRPU) HSP 1 Score: 75.9 bits (185), Expect = 2.450e-14 Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
+ V+ G I VTWSP +EG L P+ED+ PYYEAYR F +E Y +L+ G C++FNNRR+ HGR
Sbjct: 351 INVNRTGQITAVTWSPPFEGPLAVPEEDVEPYYEAYREFSTQLETSNKVVSY----RLQQGDCVIFNNRRIFHGR 421
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI0009E5F633 (uncharacterized protein LOC110062660 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5F633) HSP 1 Score: 74.3 bits (181), Expect = 2.960e-14 Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 28 IVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
IV V WSPA+EG L P+ED+ PY+EAYR F K+++E K++PG + FNNRR++HGR+
Sbjct: 150 IVAVNWSPAFEGTLSVPEEDVEPYFEAYRTFTKLLDESPMQKS----VKMQPGDLVCFNNRRVLHGRK 213
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI001BB1DFF5 (probable gamma-butyrobetaine dioxygenase n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DFF5) HSP 1 Score: 74.7 bits (182), Expect = 6.300e-14 Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 22 GAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
G I VTWSP +EG L P+ED+ PYY+AYR F +E + V +L+ G C++FNNRR++HGR
Sbjct: 362 GQITAVTWSPPFEGPLFVPEEDVEPYYQAYREFSNQLE----TSDKVVSYRLQEGDCVIFNNRRILHGR 426
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: K0RW86_THAOC (TauD domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RW86_THAOC) HSP 1 Score: 73.6 bits (179), Expect = 1.660e-13 Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 16 SGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEG------------------AYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
S G IV+V WSP +EG P + +G YYEAY F++M+ G YA EYT + KL+PG+ +VFNNRR++HGR
Sbjct: 493 SDGEIVSVFWSPPFEGPARLPADSVGRYYEAYADFERMLGGGDAAGPDGADGGGGGDELSGYAREYTWQYKLRPGEMLVFNNRRMLHGR 581
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI00077B1C4A (gamma-butyrobetaine dioxygenase-like isoform X3 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B1C4A) HSP 1 Score: 72.0 bits (175), Expect = 2.210e-13 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
+ ++S IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ + K+ PG + FNNRR++HGR+
Sbjct: 143 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 214
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI00077B1407 (gamma-butyrobetaine dioxygenase-like isoform X1 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B1407) HSP 1 Score: 72.0 bits (175), Expect = 2.730e-13 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
+ ++S IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ + K+ PG + FNNRR++HGR+
Sbjct: 143 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 214
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A7S0J2F9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2F9_9EUKA) HSP 1 Score: 71.6 bits (174), Expect = 3.840e-13 Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
+ +D+ GA++ + WSP +EG L P +D+ PYY AYR Q+ I+ A ++T R L PG+ +VFNNRR++HGR
Sbjct: 145 ISLDATGALIGLFWSPPFEGPLRVPVDDIPPYYRAYRQLQRTIDS---APQWTHR--LAPGEVLVFNNRRMLHGR 214
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI001CF2EB54 (gamma-butyrobetaine dioxygenase-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2EB54) HSP 1 Score: 72.0 bits (175), Expect = 5.450e-13 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
+ ++S IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ + K+ PG + FNNRR++HGR+
Sbjct: 313 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 384 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13459.2451.1 >prot_H-elongata_contig13459.2451.1 ID=prot_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp VLQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYAback to top mRNA from alignment at H-elongata_contig13459:630..860- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13459.2451.1 ID=mRNA_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig13459:630..860- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13459:630..860- >mRNA_H-elongata_contig13459.2451.1 ID=mRNA_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig13459:630..860- (Himanthalia elongata Himel1 dioecious)back to top |