mRNA_H-elongata_contig13459.2451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13459.2451.1
Unique NamemRNA_H-elongata_contig13459.2451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.050e-26
Identity = 45/77 (58.44%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 VLQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            + Q+D+ G ++ VTW+P +EGVLM   +D+ PYY AYR FQ+++EEG YA+ +TVR +LKPGQC+VFNNRR++HGRE
Sbjct:  360 IFQLDANGELLAVTWAPMFEGVLMCQPQDVVPYYLAYREFQRLVEEGPYAESHTVRQRLKPGQCLVFNNRRMLHGRE 436          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A836C7R7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.380e-23
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            ++VD+ G I  V W+P +EG L  P +D+ PYYEAY  FQ  +E G +A+E+TVR +++PGQCMVFNNRR++HGRE
Sbjct:  336 IEVDTDGEITGVFWAPMFEGTLHVPSKDIQPYYEAYALFQAFLEVGDFAEEHTVRARMQPGQCMVFNNRRMLHGRE 411          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A7M7PNN2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PNN2_STRPU)

HSP 1 Score: 75.9 bits (185), Expect = 2.450e-14
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
            + V+  G I  VTWSP +EG L  P+ED+ PYYEAYR F   +E       Y    +L+ G C++FNNRR+ HGR
Sbjct:  351 INVNRTGQITAVTWSPPFEGPLAVPEEDVEPYYEAYREFSTQLETSNKVVSY----RLQQGDCVIFNNRRIFHGR 421          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI0009E5F633 (uncharacterized protein LOC110062660 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5F633)

HSP 1 Score: 74.3 bits (181), Expect = 2.960e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   28 IVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            IV V WSPA+EG L  P+ED+ PY+EAYR F K+++E           K++PG  + FNNRR++HGR+
Sbjct:  150 IVAVNWSPAFEGTLSVPEEDVEPYFEAYRTFTKLLDESPMQKS----VKMQPGDLVCFNNRRVLHGRK 213          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI001BB1DFF5 (probable gamma-butyrobetaine dioxygenase n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DFF5)

HSP 1 Score: 74.7 bits (182), Expect = 6.300e-14
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   22 GAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
            G I  VTWSP +EG L  P+ED+ PYY+AYR F   +E      +  V  +L+ G C++FNNRR++HGR
Sbjct:  362 GQITAVTWSPPFEGPLFVPEEDVEPYYQAYREFSNQLE----TSDKVVSYRLQEGDCVIFNNRRILHGR 426          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: K0RW86_THAOC (TauD domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RW86_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-13
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   16 SGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEG------------------AYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
            S G IV+V WSP +EG    P + +G YYEAY  F++M+  G                   YA EYT + KL+PG+ +VFNNRR++HGR
Sbjct:  493 SDGEIVSVFWSPPFEGPARLPADSVGRYYEAYADFERMLGGGDAAGPDGADGGGGGDELSGYAREYTWQYKLRPGEMLVFNNRRMLHGR 581          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI00077B1C4A (gamma-butyrobetaine dioxygenase-like isoform X3 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B1C4A)

HSP 1 Score: 72.0 bits (175), Expect = 2.210e-13
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            + ++S   IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ +           K+ PG  + FNNRR++HGR+
Sbjct:  143 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 214          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI00077B1407 (gamma-butyrobetaine dioxygenase-like isoform X1 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B1407)

HSP 1 Score: 72.0 bits (175), Expect = 2.730e-13
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            + ++S   IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ +           K+ PG  + FNNRR++HGR+
Sbjct:  143 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 214          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: A0A7S0J2F9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2F9_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.840e-13
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGR 228
            + +D+ GA++ + WSP +EG L  P +D+ PYY AYR  Q+ I+    A ++T R  L PG+ +VFNNRR++HGR
Sbjct:  145 ISLDATGALIGLFWSPPFEGPLRVPVDDIPPYYRAYRQLQRTIDS---APQWTHR--LAPGEVLVFNNRRMLHGR 214          
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Match: UPI001CF2EB54 (gamma-butyrobetaine dioxygenase-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2EB54)

HSP 1 Score: 72.0 bits (175), Expect = 5.450e-13
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 LQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYADEYTVRTKLKPGQCMVFNNRRLVHGRE 231
            + ++S   IV V WSPA+EG L+ P+ED+ PY++AYR F KM+ +           K+ PG  + FNNRR++HGR+
Sbjct:  313 IVLNSEKEIVAVIWSPAFEGPLLVPEEDVEPYFKAYRTFTKMLNDSPIQKSL----KMAPGDLVCFNNRRILHGRK 384          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13459.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBM7_9PHAE2.050e-2658.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7R7_9STRA5.380e-2355.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7M7PNN2_STRPU2.450e-1446.67Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI0009E5F6332.960e-1448.53uncharacterized protein LOC110062660 n=1 Tax=Orbic... [more]
UPI001BB1DFF56.300e-1447.83probable gamma-butyrobetaine dioxygenase n=1 Tax=L... [more]
K0RW86_THAOC1.660e-1342.70TauD domain-containing protein (Fragment) n=1 Tax=... [more]
UPI00077B1C4A2.210e-1343.42gamma-butyrobetaine dioxygenase-like isoform X3 n=... [more]
UPI00077B14072.730e-1343.42gamma-butyrobetaine dioxygenase-like isoform X1 n=... [more]
A0A7S0J2F9_9EUKA3.840e-1345.33Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
UPI001CF2EB545.450e-1343.42gamma-butyrobetaine dioxygenase-like n=1 Tax=Acrop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13459contigH-elongata_contig13459:630..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.9e-11
Seed eggNOG ortholog159749.K0RW86
KEGG rclassRC00709
KEGG koko:K00471
KEGG ReactionR02397
KEGG Pathwayko00310,map00310
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016043,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071840
EggNOG free text desc.Taurine catabolism dioxygenase TauD, TfdA family
EggNOG OGs2XH0U@2836,COG2175@1,KOG3888@2759
EC1.14.11.1
COG Functional cat.Q
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.3903267-CDS-H-elongata_contig13459:629..8601622929799.3903267-CDS-H-elongata_contig13459:629..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13459 630..860 -
1691679162.0624301-CDS-H-elongata_contig13459:629..8601691679162.0624301-CDS-H-elongata_contig13459:629..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13459 630..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13459.2451.1prot_H-elongata_contig13459.2451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13459 630..860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13459.2451.1

>prot_H-elongata_contig13459.2451.1 ID=prot_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
VLQVDSGGAIVTVTWSPAYEGVLMSPQEDLGPYYEAYRAFQKMIEEGAYA
DEYTVRTKLKPGQCMVFNNRRLVHGRE
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mRNA from alignment at H-elongata_contig13459:630..860-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13459.2451.1 ID=mRNA_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig13459:630..860- (Himanthalia elongata Himel1 dioecious)
GTCTTACAGGTTGACTCTGGCGGAGCTATCGTGACAGTGACCTGGTCACC CGCATACGAGGGTGTGCTTATGAGCCCGCAGGAGGACTTGGGTCCGTACT ACGAGGCGTATCGCGCGTTCCAGAAGATGATAGAGGAGGGGGCTTACGCC GACGAGTACACGGTCCGCACGAAACTCAAGCCAGGACAGTGCATGGTGTT CAACAACAGGAGGCTCGTGCACGGCCGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13459:630..860-

>mRNA_H-elongata_contig13459.2451.1 ID=mRNA_H-elongata_contig13459.2451.1|Name=mRNA_H-elongata_contig13459.2451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig13459:630..860- (Himanthalia elongata Himel1 dioecious)
GTCTTACAGGTTGACTCTGGCGGAGCTATCGTGACAGTGACCTGGTCACC
CGCATACGAGGGTGTGCTTATGAGCCCGCAGGAGGACTTGGGTCCGTACT
ACGAGGCGTATCGCGCGTTCCAGAAGATGATAGAGGAGGGGGCTTACGCC
GACGAGTACACGGTCCGCACGAAACTCAAGCCAGGACAGTGCATGGTGTT
CAACAACAGGAGGCTCGTGCACGGCCGCGAGGTCTTACAGGTTGACTCTG
GCGGAGCTATCGTGACAGTGACCTGGTCACCCGCATACGAGGGTGTGCTT
ATGAGCCCGCAGGAGGACTTGGGTCCGTACTACGAGGCGTATCGCGCGTT
CCAGAAGATGATAGAGGAGGGGGCTTACGCCGACGAGTACACGGTCCGCA
CGAAACTCAAGCCAGGACAGTGCATGGTGTTCAACAACAGGAGGCTCGTG
CACGGCCGCGAG
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