mRNA_H-elongata_contig133562.2384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133562.2384.1
Unique NamemRNA_H-elongata_contig133562.2384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.980e-25
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            RN HS   M+ AKSKHLS+ +F+  ++YSSVS+ IFQTFVC+ +D  V YLRAD SL CST  H A M YAG+M LVYPVGIP
Sbjct:  821 RNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIP 903          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.530e-24
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            RN HS   M+ AKSKHLS+ +F++ ++YSSV + IFQTFVC+ +D+ + YLRAD SL C T  HKA M YAG+M  VYPVGIP
Sbjct:  110 RNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIP 192          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.520e-23
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            RN HS   ++ AK KHLS+ +F++ ++YSSVS+ IFQTFVC+ +D  V YLRAD SL CST+TH A   YAG+M  VYP GIP
Sbjct:  145 RNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIP 227          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.860e-22
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    5 NGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            N HS   M+ A  KHLS+ +F++  +YSSVS+ IFQTF+C+ +D +V YLRAD SL CST+TH     YAG+M LVYP+GIP
Sbjct:  126 NRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 207          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.160e-22
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    5 NGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            N HS   M+ A  KHLS+ +F++   YSSVS+ IFQTF+C+ +D +V YLRAD SL CST+TH     YAG+M LVYP+GIP
Sbjct:  104 NRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 185          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.460e-22
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    8 GHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            G   +AM V K +HLS+ +F++ ++Y++VSY IF+TFVCD +D  ++YLRAD SL C T TH A+  YAG+M LVYPVGIP
Sbjct:    3 GTLRQAMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIP 83          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.470e-20
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   23 AMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            AM V K +HLS+ +F++ ++Y++VSY IF+TFVCD +D   +YLR+D SL C T TH A+  YAG+M LVYPVGIP
Sbjct:  802 AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIP 877          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.390e-20
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            RN  S  A++  K+KHLS  +F++  +YSSVS+ +FQTFVCD +D  V+YLRAD SL C T  + AF  YA +M  VYP+GIP
Sbjct:  793 RNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIP 875          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5L4E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-18
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:   26 MKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            M+ AKSKHL +   ++ ++YSS S+ IFQTFVC+ +D+ V YL AD SL C T  HKA M YAG M  VYPVGIP
Sbjct:    1 MQAAKSKHLPITAVIMFVVYSSGSFNIFQTFVCERLDTGVDYLGADYSLTCCTVVHKAMMVYAGPMIFVYPVGIP 75          
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
            R+  S  A++  + KH+S+ + +  ++YSSVS  +FQ+F C+ +D    YLRAD  +EC ++ H+AF  +AGIM LVYPVGIP
Sbjct: 1516 RSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIP 1598          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.980e-2562.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI1.530e-2459.04Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FPF7_ECTSI1.520e-2357.83Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE2.860e-2256.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI6.160e-2256.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE6.460e-2255.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI1.470e-2056.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSF5_9PHAE9.390e-2053.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4E3_9PHAE1.500e-1857.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY65_9PHAE3.130e-1645.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133562contigH-elongata_contig133562:94..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size250
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133562.2384.1prot_H-elongata_contig133562.2384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133562 119..259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.9455261-UTR-H-elongata_contig133562:93..1181622929792.9455261-UTR-H-elongata_contig133562:93..118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133562 94..118 +
1691679159.6385205-UTR-H-elongata_contig133562:93..1181691679159.6385205-UTR-H-elongata_contig133562:93..118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133562 94..118 +
1622929792.9797592-UTR-H-elongata_contig133562:259..3431622929792.9797592-UTR-H-elongata_contig133562:259..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133562 260..343 +
1691679159.6566017-UTR-H-elongata_contig133562:259..3431691679159.6566017-UTR-H-elongata_contig133562:259..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133562 260..343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.9627256-CDS-H-elongata_contig133562:118..2591622929792.9627256-CDS-H-elongata_contig133562:118..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133562 119..259 +
1691679159.647334-CDS-H-elongata_contig133562:118..2591691679159.647334-CDS-H-elongata_contig133562:118..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133562 119..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133562.2384.1

>prot_H-elongata_contig133562.2384.1 ID=prot_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*
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mRNA from alignment at H-elongata_contig133562:94..343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133562.2384.1 ID=mRNA_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=250bp|location=Sequence derived from alignment at H-elongata_contig133562:94..343+ (Himanthalia elongata Himel1 dioecious)
ACGGAACGGCCACTCGACCCGAGCGATGAAGGTGGCAAAGAGTAAGCACC TCTCTCTCGGAGTGTTTCTACTCGTTATCTTGTATTCTTCTGTGTCTTAC AAGATCTTCCAGACGTTCGTTTGCGATTTCATGGATTCCAAGGTAGCCTA CCTGCGCGCCGATTAAAGTCTTGAGTGCTCGACCAATACCCACAAAGCTT TCATGACGTATGCAGGAATCATGGCGTTAGTGTATCCAGTTGGAATCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig133562:94..343+

>mRNA_H-elongata_contig133562.2384.1 ID=mRNA_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig133562:94..343+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGGCAAAGAGTAAGCACCTCTCTCTCGGAGTGTTTCTACTCGT
TATCTTGTATTCTTCTGTGTCTTACAAGATCTTCCAGACGTTCGTTTGCG
ATTTCATGGATTCCAAGGTAGCCTACCTGCGCGCCGATTAAATGAAGGTG
GCAAAGAGTAAGCACCTCTCTCTCGGAGTGTTTCTACTCGTTATCTTGTA
TTCTTCTGTGTCTTACAAGATCTTCCAGACGTTCGTTTGCGATTTCATGG
ATTCCAAGGTAGCCTACCTGCGCGCCGATTAA
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