mRNA_H-elongata_contig133562.2384.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.980e-25 Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 2
Query: 2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
RN HS M+ AKSKHLS+ +F+ ++YSSVS+ IFQTFVC+ +D V YLRAD SL CST H A M YAG+M LVYPVGIP
Sbjct: 821 RNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIP 903
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.530e-24 Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 2
Query: 2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
RN HS M+ AKSKHLS+ +F++ ++YSSV + IFQTFVC+ +D+ + YLRAD SL C T HKA M YAG+M VYPVGIP
Sbjct: 110 RNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIP 192
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.520e-23 Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 2
Query: 2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
RN HS ++ AK KHLS+ +F++ ++YSSVS+ IFQTFVC+ +D V YLRAD SL CST+TH A YAG+M VYP GIP
Sbjct: 145 RNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIP 227
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 2.860e-22 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query: 5 NGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
N HS M+ A KHLS+ +F++ +YSSVS+ IFQTF+C+ +D +V YLRAD SL CST+TH YAG+M LVYP+GIP
Sbjct: 126 NRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 207
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 6.160e-22 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query: 5 NGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
N HS M+ A KHLS+ +F++ YSSVS+ IFQTF+C+ +D +V YLRAD SL CST+TH YAG+M LVYP+GIP
Sbjct: 104 NRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 185
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 6.460e-22 Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 2
Query: 8 GHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
G +AM V K +HLS+ +F++ ++Y++VSY IF+TFVCD +D ++YLRAD SL C T TH A+ YAG+M LVYPVGIP
Sbjct: 3 GTLRQAMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIP 83
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.470e-20 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query: 23 AMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
AM V K +HLS+ +F++ ++Y++VSY IF+TFVCD +D +YLR+D SL C T TH A+ YAG+M LVYPVGIP
Sbjct: 802 AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIP 877
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 9.390e-20 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 2
Query: 2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
RN S A++ K+KHLS +F++ +YSSVS+ +FQTFVCD +D V+YLRAD SL C T + AF YA +M VYP+GIP
Sbjct: 793 RNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIP 875
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5L4E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E3_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.500e-18 Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query: 26 MKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
M+ AKSKHL + ++ ++YSS S+ IFQTFVC+ +D+ V YL AD SL C T HKA M YAG M VYPVGIP
Sbjct: 1 MQAAKSKHLPITAVIMFVVYSSGSFNIFQTFVCERLDTGVDYLGADYSLTCCTVVHKAMMVYAGPMIFVYPVGIP 75
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query: 2 RNGHSTRAMKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*SLECSTNTHKAFMTYAGIMALVYPVGIP 250
R+ S A++ + KH+S+ + + ++YSSVS +FQ+F C+ +D YLRAD +EC ++ H+AF +AGIM LVYPVGIP
Sbjct: 1516 RSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIP 1598 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133562.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig133562.2384.1 >prot_H-elongata_contig133562.2384.1 ID=prot_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp MKVAKSKHLSLGVFLLVILYSSVSYKIFQTFVCDFMDSKVAYLRAD*back to top mRNA from alignment at H-elongata_contig133562:94..343+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig133562.2384.1 ID=mRNA_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=250bp|location=Sequence derived from alignment at H-elongata_contig133562:94..343+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig133562:94..343+ >mRNA_H-elongata_contig133562.2384.1 ID=mRNA_H-elongata_contig133562.2384.1|Name=mRNA_H-elongata_contig133562.2384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig133562:94..343+ (Himanthalia elongata Himel1 dioecious)back to top |