mRNA_H-elongata_contig13221.2311.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13221.2311.1
Unique NamemRNA_H-elongata_contig13221.2311.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 232 bits (591), Expect = 3.050e-65
Identity = 127/373 (34.05%), Postives = 218/373 (58.45%), Query Frame = 1
Query:    4 QWKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--IGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNA-GTLTFDQHQNIQTVAERFGVTKTSIIPSVAE-EKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            +W+KA+  E +  ++ G W+++E P  +  +G++ VFK K ++ G +EKYK  LVAQGF+QVKG+ YEE+ SP     SIRI+L++ +A      QLDV  AYL +++  E+Y++ P  + +S K+  +  LK+ +Y L      W  T    L + G+ + + D  ++ ++ +G  +++ + YVDD+L+A+      E     +   + +KD G+A + +G  IT+   GT +  Q   I+ + ++F +++ + I    E  K  SK   P    E+++M  +PYR ++G+L+ A+  TRPDI FA    +K+ NNPG  HW  A++ ++YL  T++  +T  G P   + +  +VD+D+G+  DTRRSVSG
Sbjct:  113 EWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASAEKLHVHQLDVLTAYLNSEITHEVYMKQPTGFVESGKENLVCKLKRGLYGLKQGGYEWNITIDASLKSIGYVKCEKDWGIYTKVTNGKRILLAL-YVDDILLAAPDNNSIENEKHLLKQLYNMKDMGEAKWILGMEITKTPEGTYSLSQVNYIEKLLQKFNMSEANSITLPMEPNKQYSKDMCPHQPQEIEQMALVPYRSAIGSLLYASVATRPDITFAVSIASKYLNNPGQEHWSLAKRIMRYLLGTKNHGLTFQGSPDHNSIVQGYVDSDWGSDIDTRRSVSG 484          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 229 bits (584), Expect = 6.510e-62
Identity = 135/375 (36.00%), Postives = 215/375 (57.33%), Query Frame = 1
Query:    1 PQWKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELP--EAYRDSRKQIGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRN--AGTLTFDQHQNIQTVAERFGVTKTSIIPSVAE-EKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            P+W++AI  E+D  VA G W++V RP    V+ ++ V + K +  G I+KYK  LVA+GF QV G+ Y ++ +P     SIR++L++    GW A   D + AYL + ++E++Y+E P   A+ D +  +  L+KA+Y L      W +T    L   GF R +AD  +F +   G  ++V+  +VDD L+  +++R  +     + + + I D G  S+ +G  I+ +  AGTL+  QH  I+ +  RF  T    +    +  + LSK+  P++ AEV +MR++PYRE++GALM AA  TRPDI FA   LA+F  NPG  HW A ++  +YL  TR L +  GG+     +L  +V+AD G   + RR+++G
Sbjct:  811 PKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYK-HEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQ---RELEGYVNAD-GATQEHRRAITG 1180          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A182HDZ7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HDZ7_AEDAL)

HSP 1 Score: 220 bits (560), Expect = 7.420e-62
Identity = 155/473 (32.77%), Postives = 235/473 (49.68%), Query Frame = 1
Query:    7 WKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAY--RDSRKQIGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAGTLTFDQHQNIQTVAERFGV--TKTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSGGR***LAGSLVGSHECKR*RRRRRPNRNTSRWLRL*TSCVSYDGSRNS*PLQSTSPSRYTRTTKVQSRWRETAFS--------SPRTRHRDIKHHIVRDAI 1389
            W  A+  E D  +    W + E PKG++ +  + V+K K D  G++++YK  LV +G+ Q KG+ Y+E+ SP     S+R + +M      +  Q+D   A+L+ D+EEEIY+E P  +     R+ +  L KA+Y L  +  +W       L   G  +S+ D  ++  I  G V+ V V YVDD+L+ S     +      + S F +KD G A   +G  ITR  G+++ DQ   I ++  RF +   KT   P    EK LSK  SP T  E ++M+ IPY+E+VG LM  A  TRPDILF  + L++FN   GP HW A +   +YL  T+ +R+       G +KL  + DAD+ +  D RRS SG     L G  V S  CKR        ++T          +S   +           S++  T  ++ R    +          +PRT+H DI+HH +RDA+
Sbjct:   32 WTTAMKEEYDALINNNTWTLTELPKGRSAIKCKWVYKTKHDASGKVDRYKARLVIKGYSQRKGVDYDETYSPVVRHSSLRYLFAMAAKYNLQVDQMDAITAFLQGDIEEEIYMEQPPCFVKPGGRQLVCRLNKALYGLKQSSRVWNTKLDAALKKLGLHQSEFDPCLYYWIEDGKVLFVAV-YVDDVLIFSNDAALKNNLKAKLSSTFRMKDLGSAVSCLGIRITRAKGSVSLDQEAYIDSMLRRFNMQDAKTVSTPMNTAEK-LSKEMSPNTPEETERMKNIPYQEAVGCLMYLAQCTRPDILFTVNLLSRFNCCYGPKHWEAVKHLFRYLKGTKTIRLKY--SAAGDSKLVGYSDADWASDLDDRRSKSGYVFL-LQGGAV-SWCCKR--------QSTVSLSTCEAEYMSLSAAVQEASWWRGLVSQFGETDAIELRCDNQSTICIARNGGYTPRTKHIDIRHHYIRDAL 490          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN)

HSP 1 Score: 226 bits (577), Expect = 4.660e-61
Identity = 128/375 (34.13%), Postives = 208/375 (55.47%), Query Frame = 1
Query:    4 QWKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--IGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGC--HITRNAGTLTFDQHQNIQTVAERFGVT--KTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            +W KA+  E++      VW +VE P G   +G + VFK K+D +G +E+YK  LVA+G+ Q +G+ Y+E+ SP   + S+RIV++++     E  Q+DV  A+L  D++E++Y++ PE ++   ++  +  LKK++Y L      W   F   +  +GF ++Q D   + + + G    ++V YVDD+L+AS +     ++ R +   F +KD GDASY +G   H  R+ G L   Q   I  V  R+ +   K S+ P V +         P T+ E ++M QIPY   VG+LM A   TRPDI + A  L ++  NPG  HW+AA+K L+YL  T+D ++T         ++  + D+D+  C D ++S SG
Sbjct:  809 EWNKAMIDELESMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNVERYKARLVAKGYTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLDEDVYMKQPEGFKPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKRQGFMKNQVDQCTYLK-MSGSDFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAP-VVKGDVFGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDYKLTY--RRSDHLEVVGYSDSDFAKCKDDKKSTSG 1179          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 217 bits (552), Expect = 1.280e-60
Identity = 129/375 (34.40%), Postives = 206/375 (54.93%), Query Frame = 1
Query:    7 WKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--IGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHI--TRNAGTLTFDQHQNIQTVAERFGVTKTSIIPSVA---EEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            W  A+  E+       VW++VE P+G   +G + VFK K D +G IE+YK  LVA+GF Q +G+ Y+E+ SP   + S+RI+++++     E  Q+DV  A+L  ++EEE+++  PE +    K+  +  LKK++Y L      W   F   + + GF+ +  D  ++ ++  G   + ++ YVDD+L+AS+      +    +   F +KD G+ASY +G  I   R+ G L   Q   I+ V ERFG+ K S  PS+A   +    S    PQ + E   M +IPY  +VG+L+ A T TRPDI FA   L ++ +NPG  HW+A +K ++YL  T++  +T         ++  + D+D G C DT +S SG
Sbjct:   32 WIDAMNDELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCS--PSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY--RRSDNLEVVGYSDSDLGGCLDTGKSTSG 401          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A445GJ88_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445GJ88_GLYSO)

HSP 1 Score: 225 bits (574), Expect = 1.650e-60
Identity = 132/373 (35.39%), Postives = 205/373 (54.96%), Query Frame = 1
Query:    7 WKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--IGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNA--GTLTFDQHQNIQTVAERFGVTKTSIIP-SVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            W  A+  E+D     GVW +VE PKG   +G + VFK K D  G +E+YK  LVA+GF Q  G+ Y+E+ SP   + S RI+++++T    E  Q+DV  A+L  D+EE++Y++ P  +    K+  +  LKK++Y L      W   F   + + GF+ +  D  ++ ++  G  V+ +V YVDD+L+A+       +  + + S F +KD G+A+Y +G  I RN   G L   Q   I  V ERF + K S  P  + +    S +  P+ D E  +M +I Y   VG++M A T TRPDI FA   L ++ +NPG  HW+AA+K L+YL  T+D  +T   +     ++  + D+D+  C DTR+S  G
Sbjct:  684 WLNAMKEEIDSMEHNGVWDLVELPKGCKRVGCKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVTHYDLELHQMDVKTAFLNGDLEEDVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCVYLKV-SGSKVMFLVLYVDDILIATNDLGLLHETKKFLSSNFEMKDMGEANYVIGIEIFRNRSQGLLGLSQKTYINKVLERFRMEKCSASPVPIQKRDKFSLAQCPKNDLERKQMEEISYASVVGSIMYAQTCTRPDISFATGMLGRYQSNPGMEHWKAAKKVLRYLQGTKDHMLTY--KRSDHLEVIGYSDSDFAGCVDTRKSTLG 1053          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 224 bits (571), Expect = 3.740e-60
Identity = 135/376 (35.90%), Postives = 206/376 (54.79%), Query Frame = 1
Query:    1 PQWKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPE--AYRDSRKQIGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRN--AGTLTFDQHQNIQTVAERFGV--TKTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            P+W++AI  EMD   A   + +V RP G  V+G+R+VF RK D DG I++ K  +VAQGF Q+ G+ Y E+ +P     S+RI+L++     W   QLDV  AYL  D++EEIY+  P   A +     +  L+K++Y L      W K +   +   G  RS+AD   F +  HG   + +V  + D ++ + T    E+    + + F + D GD ++ +G  + R+  AGT+   Q   I T+     +   K +  P +A    L K+  P T + + +M  IPYRE VG  M  A  TRPDI +A H+LA++ +NPG  HW A ++ ++YL  TR+L +T GG+  G   L+ + DAD+G+  DTR SV G
Sbjct: 1001 PKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAWYKKYRDAMTTLGMTRSEADHACFWQ--HGGDSLAMVGTIVDDMLVTGTPDLVEKFRAGIKAEFTVTDAGDVAWLLGIEVVRDLDAGTVRLAQRSAIDTLMRAMHLEGAKPASTP-IAVGGVLDKTQCPTTASAIAEMSGIPYREGVGMCMYIAVTTRPDIAYAVHRLAQYMSNPGRPHWEALKRLVRYLIGTRELWLTYGGDASG---LAGYTDADWGSSDDTRHSVCG 1370          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 217 bits (552), Expect = 5.140e-60
Identity = 136/377 (36.07%), Postives = 206/377 (54.64%), Query Frame = 1
Query:    7 WKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--IGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAG--TLTFDQHQNIQTVAERFGVT-----KTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            W+KAI  E    +A G W++V+ PKGK  L ++ +FK K D  G IE+YK  LV +G+ Q+K + YEE  +P     S+R++L+++    WE  Q DVD A+L  D+ EE+Y+  PE   ++ K+  +  L +A+Y L      W K     L +KGF +  +DS ++ R   G  V +I  YVDDLL+ + T    ++    + + F  KD G   + +G  + RN    TL+ DQ    + V E+F +      KT   P+V     LSK + P+ + E  +M+   YR  VG+LM   T +RPDI F    ++K+ N+PG  HW AA++ L+Y+  T    +   G    G +L+A+VD+DY    DTRRSVSG
Sbjct:   56 WRKAIDEEGRSLIAHGTWKLVKLPKGKRALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKEDLVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVR-TGGSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTPCDPNVI----LSKENCPKNEDERAQMKNKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRYVKGTIGYGLVIDGRSRTGKQLTAFVDSDYAKDIDTRRSVSG 427          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 223 bits (569), Expect = 5.540e-60
Identity = 132/375 (35.20%), Postives = 208/375 (55.47%), Query Frame = 1
Query:    7 WKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAY--RDSRKQIGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNA--GTLTFDQHQNIQTVAERFGVTKTSIIPSVA---EEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            W  A+  EM+   + GVW +VE P G   +G + VFK K D  G IE+YK  LVA+GF Q +G+ Y E+ SP   + S+R++L+++     E  Q+DV  A+L  D+EEE+Y++ PE +   D  + +  LKK++Y L      W   F   +++ GF  +  D  +++++  G  +  +V YVDD+L+A+  K    +  + +   F +KD G+ASY +G  I R+   G L   Q   I  V ERF +   S  PSVA   +    + +  P+ D E ++M+ IPY  +VG+LM A   TRPDI FA   L ++ ++PG  HWRAA+K ++YL  T+D  +          ++  + D+D+  C D+R+S SG
Sbjct:  701 WYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCS--PSVAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMY--RRTDNLEVIGYSDSDFAGCIDSRKSTSG 1070          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 214 bits (545), Expect = 6.910e-60
Identity = 133/372 (35.75%), Postives = 201/372 (54.03%), Query Frame = 1
Query:    4 QWKKAIAREMDGQVARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCHLVAQGFRQVKGLHYEESSSPTPAQVSIRIVLSMITALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQIGLLKKAMYELIHTWLLW*KTFGIELAAKGFQRSQADS*MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHIT--RNAGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKA-LSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 1110
            QW KA+  E D     G W  V+R     V+ T+ VF +K ++ G I ++K  LVA GF Q+ G+ + E+ +   +  SIRI LS+  A G+   QLDVD A+L AD++E++Y+E PE  +    ++  L KA+Y L      W KT    L   GF+   +D+ ++     G    + + YVDD++V   T+   ++  + + + F IK+ G   + +G  I   R    L+ +Q   ++T+ ERF       + +  E+   LSK+D P+ D +  +M + PYR  +G L   A  TRPDI FA   L++F  NPGP HW AA + L+YL  TRD  I+ GG+    T +  + DAD+GT  D RRSVSG
Sbjct:    8 QWLKAVKAEFDAHSRNGTWTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICL-YVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSG 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A075B0V5_ROZAC3.050e-6534.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SPD4_PYCCI6.510e-6236.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A182HDZ7_AEDAL7.420e-6232.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A251UJK4_HELAN4.660e-6134.13Putative zinc finger, CCHC-type n=7 Tax=Helianthus... [more]
A0A2P6S2B9_ROSCH1.280e-6034.40Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A445GJ88_GLYSO1.650e-6035.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V8C6_TRAPU3.740e-6035.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A225WDK2_9STRA5.140e-6036.07Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A2N9EM55_FAGSY5.540e-6035.20Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A8K1CTN1_PYTOL6.910e-6035.75Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13221contigH-elongata_contig13221:3108..4585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1478
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13221.2311.1prot_H-elongata_contig13221.2311.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13221 3606..4226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.0943267-UTR-H-elongata_contig13221:3107..36051622929785.0943267-UTR-H-elongata_contig13221:3107..3605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13221 3108..3605 +
1691679156.6316664-UTR-H-elongata_contig13221:3107..36051691679156.6316664-UTR-H-elongata_contig13221:3107..3605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13221 3108..3605 +
1622929785.1285744-UTR-H-elongata_contig13221:4226..45851622929785.1285744-UTR-H-elongata_contig13221:4226..4585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13221 4227..4585 +
1691679156.6523383-UTR-H-elongata_contig13221:4226..45851691679156.6523383-UTR-H-elongata_contig13221:4226..4585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13221 4227..4585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.1152155-CDS-H-elongata_contig13221:3605..42261622929785.1152155-CDS-H-elongata_contig13221:3605..4226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13221 3606..4226 +
1691679156.6436152-CDS-H-elongata_contig13221:3605..42261691679156.6436152-CDS-H-elongata_contig13221:3605..4226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13221 3606..4226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13221.2311.1

>prot_H-elongata_contig13221.2311.1 ID=prot_H-elongata_contig13221.2311.1|Name=mRNA_H-elongata_contig13221.2311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDA
SYYVGCHITRNAGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKS
DSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPG
PTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRR
SVSGGR*
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mRNA from alignment at H-elongata_contig13221:3108..4585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13221.2311.1 ID=mRNA_H-elongata_contig13221.2311.1|Name=mRNA_H-elongata_contig13221.2311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1478bp|location=Sequence derived from alignment at H-elongata_contig13221:3108..4585+ (Himanthalia elongata Himel1 dioecious)
CCGCAATGGAAAAAGGCGATCGCGCGCGAAATGGATGGGCAAGTTGCTCG AGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCA CGAGAGTTGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAAAAG TATAAATGTCATCTCGTGGCGCAGGGTTTCAGGCAGGTAAAAGGCTTACA CTACGAGGAATCCTCCTCTCCGACTCCTGCGCAGGTCAGCATTAGGATTG TACTCAGCATGATCACGGCTCTCGGCTGGGAGGCGTGGCAGCTGGACGTC GACATGGCCTACTTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCT TCCGGAGGCATACCGTGACTCCAGGAAGCAAATCGGCCTACTAAAGAAGG CAATGTACGAACTCATCCACACCTGGCTGCTGTGGTAAAAAACGTTCGGG ATCGAGCTCGCGGCGAAGGGGTTCCAGAGATCTCAAGCCGACTCATGAAT GTTCCGGCGGATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGCCTACG TCGACGACCTTCTAGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCG GTAAGGGACGTGTACTCCTGTTTCCCCATCAAGGATCCGGGGGATGCTTC GTATTACGTGGGATGCCACATCACGCGGAACGCCGGGACACTGACGTTTG ACCAGCATCAGAACATACAAACTGTGGCGGAACGTTTTGGCGTGACGAAG ACCAGCATCATCCCGTCCGTGGCAGAAGAAAAAGCCCTTTCAAAATCAGA CAGCCCGCAAACGGACGCCGAGGTTGATAAAATGCGCCAGATTCCCTACA GAGAAAGCGTTGGGGCCCTAATGTTGGCAGCGACGATGACCAGGCCCGAC ATTTTATTCGCTGCGCACCAACTGGCAAAATTTAACAACAACCCAGGACC GACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGTACTC GGGACCTCCGGATCACCTGCGGAGGTGAACCGGGGGGGGGGACCAAGTTA TCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCGTCGCTC AGTGTCGGGGGGGCGGTGATGATGATTGGCGGGGTCATTAGTTGGTTCTC ACGAGTGCAAAAGGTAACGGCGGAGGCGTCGTCCGAATCGGAATACGTCG CGCTGGCTGAGATTGTAAACGAGTTGCGTTTCCTACGACGGATCAAGAAA CTCATGACCCCTCCAATCGACGTCGCCATCAAGATACACGAGGACAACGA AGGTGCAATCAAGATGGCGAGAAACCGCTTTCAGCAGTCCACGAACGAGG CACAGGGACATTAAGCATCACATTGTCCGCGACGCGATCAAGGGGGTTTG GTTCACGTAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCAC GAAGTCGGTAGACGTAAAGACATTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13221:3108..4585+

>mRNA_H-elongata_contig13221.2311.1 ID=mRNA_H-elongata_contig13221.2311.1|Name=mRNA_H-elongata_contig13221.2311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig13221:3108..4585+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCGGCGGATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGCCTA
CGTCGACGACCTTCTAGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAG
CGGTAAGGGACGTGTACTCCTGTTTCCCCATCAAGGATCCGGGGGATGCT
TCGTATTACGTGGGATGCCACATCACGCGGAACGCCGGGACACTGACGTT
TGACCAGCATCAGAACATACAAACTGTGGCGGAACGTTTTGGCGTGACGA
AGACCAGCATCATCCCGTCCGTGGCAGAAGAAAAAGCCCTTTCAAAATCA
GACAGCCCGCAAACGGACGCCGAGGTTGATAAAATGCGCCAGATTCCCTA
CAGAGAAAGCGTTGGGGCCCTAATGTTGGCAGCGACGATGACCAGGCCCG
ACATTTTATTCGCTGCGCACCAACTGGCAAAATTTAACAACAACCCAGGA
CCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGTAC
TCGGGACCTCCGGATCACCTGCGGAGGTGAACCGGGGGGGGGGACCAAGT
TATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCGTCGC
TCAGTGTCGGGGGGGCGGTGAATGTTCCGGCGGATTCTCCACGGGGTAGT
GGTAGTCGTCATTGTGGCCTACGTCGACGACCTTCTAGTTGCTAGTGCGA
CGAAACGTGACGAGGAGCAAGCGGTAAGGGACGTGTACTCCTGTTTCCCC
ATCAAGGATCCGGGGGATGCTTCGTATTACGTGGGATGCCACATCACGCG
GAACGCCGGGACACTGACGTTTGACCAGCATCAGAACATACAAACTGTGG
CGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTGGCAGAA
GAAAAAGCCCTTTCAAAATCAGACAGCCCGCAAACGGACGCCGAGGTTGA
TAAAATGCGCCAGATTCCCTACAGAGAAAGCGTTGGGGCCCTAATGTTGG
CAGCGACGATGACCAGGCCCGACATTTTATTCGCTGCGCACCAACTGGCA
AAATTTAACAACAACCCAGGACCGACACACTGGAGGGCAGCCCAGAAAGC
GCTGCAATATTTATGGCGTACTCGGGACCTCCGGATCACCTGCGGAGGTG
AACCGGGGGGGGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGC
ACCTGCCCGGACACGCGTCGCTCAGTGTCGGGGGGGCGGTGA
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