mRNA_H-elongata_contig131971.2298.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI) HSP 1 Score: 104 bits (260), Expect = 4.890e-24 Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++ D+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 109 PRNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 251
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: UPI001EDEDFDC (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEDFDC) HSP 1 Score: 102 bits (254), Expect = 6.050e-24 Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 13 EQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYG-GQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLRQV 438
++KEE+ K PYREAVG L++ A + DI AV V++FCE PG + AV I+ YL TK+ I + G G + + +SD+ +DT S S V M NG ISW S RQ A T + EYV+L+EAA+E + LR++
Sbjct: 7 QEKEEMKKKPYREAVGCLIYAAITVRPDISYAVGRVSRFCEIPGRPHWSAVKHILSYLAGTKNHGICFSDGNGERNTLLGFCDSDYAGEVDTRRSTSGLVFMANNGPISWGSTRQTCIAQSTTEAEYVSLNEAAREAVWLRRL 149
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438EZX7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZX7_VITVI) HSP 1 Score: 103 bits (257), Expect = 6.450e-24 Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY VG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 63 PRNNMEREQMKKIPYASVVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVDYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 205
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438IPK0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IPK0_VITVI) HSP 1 Score: 106 bits (265), Expect = 6.580e-24 Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E+I K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 520 PRNNIEREQIKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 662
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438EVG7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EVG7_VITVI) HSP 1 Score: 106 bits (265), Expect = 6.700e-24 Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM++ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY L + Y++SD+G LD++ S SR ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 633 PRNNMEREQMKKIPYASAVGSLMYSQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQETKDYMLTYKISE-QLEVVGYSDSDYGGCLDSLKSTSRFFFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 775
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 105 bits (262), Expect = 1.180e-23 Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 279 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 421
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A5BKB9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKB9_VITVI) HSP 1 Score: 105 bits (262), Expect = 1.750e-23 Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 960 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1102
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438DUF5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DUF5_VITVI) HSP 1 Score: 105 bits (262), Expect = 1.760e-23 Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY + L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 1038 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1180
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438GRS4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GRS4_VITVI) HSP 1 Score: 105 bits (261), Expect = 2.400e-23 Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
P+N ++E++ K PY AVG+LM+ T T+ DI AV + ++ +PG + KA K+++YL TKD +TY L + Y++SD+G LD++ S S V ML NGAISW S +Q +TAS T + E+VA EA+ L LR
Sbjct: 1065 PRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRTE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1207
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: UPI001EE127E3 (secreted RxLR effector protein 161-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EE127E3) HSP 1 Score: 98.2 bits (243), Expect = 3.900e-23 Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query: 1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGG---QGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKE 417
P+ E++E++ + PY+ AVGAL++ T T+ DI AV VA+F +NPG + AV +II+YL TK+ I + QG +T++D+G D S S + L G ISW+SR+Q+ TA+ T + E+VA SEAAKE
Sbjct: 23 PKTKEEEEKMKEVPYQSAVGALLYLLTTTRPDIAYAVSKVARFNQNPGPQHWIAVKRIIRYLAGTKEYGIIFSSTKEQGA----LGFTDTDYGGDHDDRKSTSECIFFLNGGPISWFSRKQECTATSTIEAEFVAGSEAAKE 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig131971.2298.1 >prot_H-elongata_contig131971.2298.1 ID=prot_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQback to top mRNA from alignment at H-elongata_contig131971:405..857- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig131971.2298.1 ID=mRNA_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig131971:405..857- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig131971:405..857- >mRNA_H-elongata_contig131971.2298.1 ID=mRNA_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig131971:405..857- (Himanthalia elongata Himel1 dioecious)back to top |