mRNA_H-elongata_contig131971.2298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131971.2298.1
Unique NamemRNA_H-elongata_contig131971.2298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI)

HSP 1 Score: 104 bits (260), Expect = 4.890e-24
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++ D+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:  109 PRNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 251          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: UPI001EDEDFDC (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEDFDC)

HSP 1 Score: 102 bits (254), Expect = 6.050e-24
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   13 EQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYG-GQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLRQV 438
            ++KEE+ K PYREAVG L++ A   + DI  AV  V++FCE PG  +  AV  I+ YL  TK+  I +  G G    +  + +SD+   +DT  S S  V M  NG ISW S RQ   A  T + EYV+L+EAA+E + LR++
Sbjct:    7 QEKEEMKKKPYREAVGCLIYAAITVRPDISYAVGRVSRFCEIPGRPHWSAVKHILSYLAGTKNHGICFSDGNGERNTLLGFCDSDYAGEVDTRRSTSGLVFMANNGPISWGSTRQTCIAQSTTEAEYVSLNEAAREAVWLRRL 149          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438EZX7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZX7_VITVI)

HSP 1 Score: 103 bits (257), Expect = 6.450e-24
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY   VG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:   63 PRNNMEREQMKKIPYASVVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVDYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 205          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438IPK0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IPK0_VITVI)

HSP 1 Score: 106 bits (265), Expect = 6.580e-24
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E+I K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:  520 PRNNIEREQIKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 662          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438EVG7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EVG7_VITVI)

HSP 1 Score: 106 bits (265), Expect = 6.700e-24
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM++ T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY      L +  Y++SD+G  LD++ S SR   ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:  633 PRNNMEREQMKKIPYASAVGSLMYSQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQETKDYMLTYKISE-QLEVVGYSDSDYGGCLDSLKSTSRFFFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 775          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 105 bits (262), Expect = 1.180e-23
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:  279 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 421          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A5BKB9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKB9_VITVI)

HSP 1 Score: 105 bits (262), Expect = 1.750e-23
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct:  960 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1102          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438DUF5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DUF5_VITVI)

HSP 1 Score: 105 bits (262), Expect = 1.760e-23
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY  +   L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct: 1038 PRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1180          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A438GRS4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GRS4_VITVI)

HSP 1 Score: 105 bits (261), Expect = 2.400e-23
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKEVLVLR 432
            P+N  ++E++ K PY  AVG+LM+  T T+ DI  AV  + ++  +PG  + KA  K+++YL  TKD  +TY      L +  Y++SD+G  LD++ S S  V ML NGAISW S +Q +TAS T + E+VA  EA+   L LR
Sbjct: 1065 PRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRTE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1207          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: UPI001EE127E3 (secreted RxLR effector protein 161-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EE127E3)

HSP 1 Score: 98.2 bits (243), Expect = 3.900e-23
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 PQNPEQKEEIMKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGG---QGCGLCMEAYTNSDFGVYLDTI*SVSRAVVMLLNGAISWYSRRQQVTASGTPDVEYVALSEAAKE 417
            P+  E++E++ + PY+ AVGAL++  T T+ DI  AV  VA+F +NPG  +  AV +II+YL  TK+  I +     QG       +T++D+G   D   S S  +  L  G ISW+SR+Q+ TA+ T + E+VA SEAAKE
Sbjct:   23 PKTKEEEEKMKEVPYQSAVGALLYLLTTTRPDIAYAVSKVARFNQNPGPQHWIAVKRIIRYLAGTKEYGIIFSSTKEQGA----LGFTDTDYGGDHDDRKSTSECIFFLNGGPISWFSRKQECTATSTIEAEFVAGSEAAKE 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A5B0M2_VITVI4.890e-2441.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001EDEDFDC6.050e-2442.66secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A438EZX7_VITVI6.450e-2441.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IPK0_VITVI6.580e-2443.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EVG7_VITVI6.700e-2442.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JMN5_VITVI1.180e-2342.36Retrovirus-related Pol polyprotein from transposon... [more]
A5BKB9_VITVI1.750e-2342.36Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438DUF5_VITVI1.760e-2342.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GRS4_VITVI2.400e-2342.36Retrovirus-related Pol polyprotein from transposon... [more]
UPI001EE127E33.900e-2341.55secreted RxLR effector protein 161-like n=2 Tax=Da... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131971contigH-elongata_contig131971:405..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.9e-11
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131971.2298.1prot_H-elongata_contig131971.2298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131971 567..827 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.6999633-UTR-H-elongata_contig131971:404..5661622929783.6999633-UTR-H-elongata_contig131971:404..566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131971 405..566 -
1691679156.0285492-UTR-H-elongata_contig131971:404..5661691679156.0285492-UTR-H-elongata_contig131971:404..566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131971 405..566 -
1622929783.7322156-UTR-H-elongata_contig131971:827..8571622929783.7322156-UTR-H-elongata_contig131971:827..857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131971 828..857 -
1691679156.0480907-UTR-H-elongata_contig131971:827..8571691679156.0480907-UTR-H-elongata_contig131971:827..857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131971 828..857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.719698-CDS-H-elongata_contig131971:566..8271622929783.719698-CDS-H-elongata_contig131971:566..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131971 567..827 -
1691679156.039316-CDS-H-elongata_contig131971:566..8271691679156.039316-CDS-H-elongata_contig131971:566..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131971 567..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131971.2298.1

>prot_H-elongata_contig131971.2298.1 ID=prot_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQ
YLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*
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mRNA from alignment at H-elongata_contig131971:405..857-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131971.2298.1 ID=mRNA_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig131971:405..857- (Himanthalia elongata Himel1 dioecious)
CCGCAGAACCCGGAGCAGAAGGAGGAAATTATGAAGTTTCCATACCGGGA GGCAGTGGGAGCGCTTATGTGGACGGCGACGATGACACAGTCGGATATTG TGAGCGCAGTACGCGCTGTGGCCAAGTTCTGCGAAAACCCTGGGGCGGCG AATAAGAAGGCAGTTATTAAGATTATACAGTATCTCCTTCATACGAAGGA TCGGGCGATTACATACGGTGGACAAGGCTGTGGACTCTGCATGGAGGCAT ACACGAACTCGGATTTCGGAGTCTACCTGGATACGATATGATCGGTGTCA CGTGCGGTGGTGATGCTGCTGAATGGGGCGATCAGCTGGTACTCAAGGAG GCAACAAGTGACAGCATCGGGTACCCCGGATGTAGAGTACGTTGCTTTAT CAGAGGCGGCAAAGGAGGTTCTAGTTTTGAGACAGGTCCAGGAGTTCATG GAA
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Coding sequence (CDS) from alignment at H-elongata_contig131971:405..857-

>mRNA_H-elongata_contig131971.2298.1 ID=mRNA_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig131971:405..857- (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTCCATACCGGGAGGCAGTGGGAGCGCTTATGTGGACGGCGAC
GATGACACAGTCGGATATTGTGAGCGCAGTACGCGCTGTGGCCAAGTTCT
GCGAAAACCCTGGGGCGGCGAATAAGAAGGCAGTTATTAAGATTATACAG
TATCTCCTTCATACGAAGGATCGGGCGATTACATACGGTGGACAAGGCTG
TGGACTCTGCATGGAGGCATACACGAACTCGGATTTCGGAGTCTACCTGG
ATACGATATGAATGAAGTTTCCATACCGGGAGGCAGTGGGAGCGCTTATG
TGGACGGCGACGATGACACAGTCGGATATTGTGAGCGCAGTACGCGCTGT
GGCCAAGTTCTGCGAAAACCCTGGGGCGGCGAATAAGAAGGCAGTTATTA
AGATTATACAGTATCTCCTTCATACGAAGGATCGGGCGATTACATACGGT
GGACAAGGCTGTGGACTCTGCATGGAGGCATACACGAACTCGGATTTCGG
AGTCTACCTGGATACGATATGA
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