mRNA_H-elongata_contig131378.2265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131378.2265.1
Unique NamemRNA_H-elongata_contig131378.2265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: D8LT28_ECTSI (RING-Gid-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.680e-58
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSKFKCPTCPMEQTESDTLALTL 327
            +AG+LALPTLVKMAAVVRGSNQEW GMQELPLEVPLPPGLRYHSMFSCPVSRE ST  NPPVLLKCGH VLRSSVSRL RNGS+FKCPTCP+EQ E++T+ LTL
Sbjct:  150 RAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 253
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 5.870e-55
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSKFKCPTCPMEQTESDTLALTL 327
            +AG+LALPTLVKMAAVVRGSN EW GM+ELPLEVPLPPGLRYHSMFSCPVSRE ST  NPPVLLKCGHAVLRSSVSRL RNGS+FKCPTCP+EQ E++T+ LTL
Sbjct:  376 RAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 479
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A484E8Z1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8Z1_BRELC)

HSP 1 Score: 125 bits (315), Expect = 3.300e-32
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
            + GV ALP + K+A+V+     +W  ++ELP+E+P+    R+HS+FSCPVS+E STP NPPVLLKCGH +  S V R+  N S+ FKCPTCP+EQTESDT  L
Sbjct:  315 RVGVPALPAMRKLASVMDSKLADWNNLEELPVEIPIAKEFRFHSVFSCPVSKEESTPENPPVLLKCGHVICHSCVKRISYNLSRQFKCPTCPVEQTESDTCKL 417
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A2P4Y823_9STRA (RMD5 family protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y823_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.620e-32
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
             AGV ALP + K+ AV+     +W  M+ELP+E+P+   LR+H++FSCPVS+E STP NPP+LLKCGH + RS V R   N ++ FKCPTCP+EQTES+T  L
Sbjct:  340 SAGVSALPAMRKLIAVMDSKLADWASMEELPVEIPIAKELRFHNVFSCPVSKEESTPENPPILLKCGHVICRSCVKRFSYNMTRRFKCPTCPIEQTESETRKL 442
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A261Y3R7_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y3R7_9FUNG)

HSP 1 Score: 123 bits (308), Expect = 1.130e-31
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLG----RNGSKFKCPTCPMEQTESDTL 315
              G +ALPT++KMA +++    EW    ELP+E+PLP  LRYHS+F+CPVS+E +T  NPP+++ CGH + + S+S+LG    RN SKFKCP CP E T +  +
Sbjct:  242 MVGTIALPTIIKMATIMKDKKTEWSQQDELPVEIPLPENLRYHSIFACPVSKEQATEENPPMMMPCGHVICKESLSKLGKGSRRNSSKFKCPYCPSESTPNQAV 345
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: G4Z294_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z294_PHYSP)

HSP 1 Score: 124 bits (310), Expect = 2.610e-31
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
             AGV ALP + K+ +V+     +W  M+ELP+E+P+   LR+H++FSCPVS+E STP NPP+LLKCGH + RS V R   N ++ FKCPTCP+EQ ES+T  L
Sbjct:  346 SAGVSALPAMRKLVSVIDSKLTDWGSMEELPVEIPIAKELRFHNVFSCPVSKEESTPDNPPILLKCGHVICRSCVKRFSYNMTRRFKCPTCPVEQAESETRKL 448
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A0P1AZT3_PLAHL (Rmd5 family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZT3_PLAHL)

HSP 1 Score: 123 bits (308), Expect = 4.770e-31
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
              GV ALP + K+ ++      +W+ M+ELP+E+P+P   R+H++FSCPVS+E STP NPP+LLKCGH +  S V R   N ++ FKCPTCP+EQTE +TL L
Sbjct:  341 STGVSALPAMQKLVSLTDSKLIDWDRMEELPVEIPIPQEFRFHNVFSCPVSKEESTPNNPPILLKCGHVICHSCVKRFSYNMTRRFKCPTCPIEQTEEETLKL 443
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A2D4CM94_PYTIN (RMD5 family protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CM94_PYTIN)

HSP 1 Score: 122 bits (305), Expect = 8.920e-31
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
             AG+ ALP + K+ AV+      W+ ++ELP+E+P+P   RYH++F+CPVS+E STP NPP+LLKCGH + +S V R+  N ++ FKCPTCP+EQTE +T  L
Sbjct:  312 SAGIAALPAMRKLVAVMDTKVTNWDTLEELPVELPIPDEHRYHTVFACPVSKEESTPSNPPILLKCGHVICKSCVKRISFNMTRRFKCPTCPVEQTECETREL 414
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: D0NTQ2_PHYIT (RMD5 family protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NTQ2_PHYIT)

HSP 1 Score: 122 bits (306), Expect = 9.480e-31
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
             AGV ALP + K+ +V+     +W  M ELP+E+P+   LR+H++FSCPVS+E STP NPP+LLKCGH +  S V R   N ++ FKCPTCP+EQTES+T  L
Sbjct:  343 SAGVSALPAMRKLVSVMSSKLADWGNMDELPVEIPIAKELRFHNVFSCPVSKEESTPENPPILLKCGHVICHSCVKRFSYNMTRRFKCPTCPVEQTESETRKL 445
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BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Match: A0A8K1CKT8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKT8_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 7.390e-30
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:   16 QAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSMFSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSK-FKCPTCPMEQTESDTLAL 321
              G+ ALP + K+ AV+     +WE ++ELP+E+P+    R+H++F+CPVS+E STP NPP+LLKCGH + +S V ++  N ++ FKCPTCPMEQTE++T  L
Sbjct:  321 SVGIAALPAMRKLVAVMDSKMTDWEALEELPVELPIANEHRFHTVFACPVSKEESTPSNPPMLLKCGHVICKSCVKKISFNMTRRFKCPTCPMEQTEAETREL 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131378.2265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT28_ECTSI1.680e-5885.58RING-Gid-type domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8M5_9PHAE5.870e-5584.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484E8Z1_BRELC3.300e-3255.34Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2P4Y823_9STRA4.620e-3255.34RMD5 family protein n=3 Tax=Phytophthora TaxID=478... [more]
A0A261Y3R7_9FUNG1.130e-3149.04Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
G4Z294_PHYSP2.610e-3153.40Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0P1AZT3_PLAHL4.770e-3151.46Rmd5 family protein n=1 Tax=Plasmopara halstedii T... [more]
A0A2D4CM94_PYTIN8.920e-3151.46RMD5 family protein n=1 Tax=Pythium insidiosum Tax... [more]
D0NTQ2_PHYIT9.480e-3153.40RMD5 family protein n=2 Tax=Phytophthora infestans... [more]
A0A8K1CKT8_PYTOL7.390e-3049.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131378contigH-elongata_contig131378:110..1172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.9e-45
Seed eggNOG ortholog2880.D8LT28
Preferred nameRMND5A
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5109@1,KOG2817@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_003890.1
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.250043-CDS-H-elongata_contig131378:109..2601622929780.250043-CDS-H-elongata_contig131378:109..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131378 110..260 -
1691679154.7735574-CDS-H-elongata_contig131378:109..2601691679154.7735574-CDS-H-elongata_contig131378:109..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131378 110..260 -
1622929780.2664785-CDS-H-elongata_contig131378:993..11721622929780.2664785-CDS-H-elongata_contig131378:993..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131378 994..1172 -
1691679154.7830715-CDS-H-elongata_contig131378:993..11721691679154.7830715-CDS-H-elongata_contig131378:993..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131378 994..1172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131378.2265.1prot_H-elongata_contig131378.2265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131378 110..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131378.2265.1

>prot_H-elongata_contig131378.2265.1 ID=prot_H-elongata_contig131378.2265.1|Name=mRNA_H-elongata_contig131378.2265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
LTIIPQAGVLALPTLVKMAAVVRGSNQEWEGMQELPLEVPLPPGLRYHSM
FSCPVSRESSTPGNPPVLLKCGHAVLRSSVSRLGRNGSKFKCPTCPMEQT
ESDTLALTL*
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mRNA from alignment at H-elongata_contig131378:110..1172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131378.2265.1 ID=mRNA_H-elongata_contig131378.2265.1|Name=mRNA_H-elongata_contig131378.2265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-elongata_contig131378:110..1172- (Himanthalia elongata Himel1 dioecious)
CTCACGATAATTCCACAGGCTGGGGTGCTGGCCCTGCCAACGTTGGTAAA
GATGGCGGCCGTTGTAAGGGGCAGCAATCAGGAGTGGGAGGGCATGCAAG
AACTGCCGCTGGAGGTCCCCCTGCCCCCGGGTTTGCGCTACCACAGCATG
TTTTCCTGTCCGGTTTCAAGAGAATCGAGGTGCGCCCCCCCCTCCTCCCC
GTCCACAATCCCCCATTGACCCCCCCCTCCCCCCCTCCCCCGAAAAAGAA
AAGTCGCCCTCGCATTTTTATTTTAAAATATCCTTTCCCCCACCCTCTCC
CTCGATCTTCCACCCTTTCACGGGGCTGGATGACCATGCTCCGAGTACAT
AAGCTGGTGTAATGCGAGCGCAGGCATACATCGTTGTAGTTCTCTTCCGT
CCAGGATTTTTCCCAGAAACAGCACCAGCAGCACCCGGGGGTTGGAGTTT
GGCTCACTGGGCTGCTCCGAGCTTGTACCCAACGTTGCAAAGTTGTGCCA
ACGTATGTGTGTGTGTGTGTCTCTGTGTGTGTTTGTATGAATGTATGAAT
ATTTTATAATGTATACTCGTGCTTCTCTTCTGCTCTTCACCTCGAGACTT
TTTGGTTTGTGGCACTTGGAAGCGTTGCCGCGCAGCCTCCCGCATCCAGC
TACTGTATGCGATGCGATCTGTGCTCTTACGCTCGAATCAACCTCGTTGA
TTTGCATTTATCTGAATAGTGGTCTCATGTGCCGTGCTAAATAGGGTCTC
ACATTTCTCGAGCACAAAGCACAGCGCATGGTAGATTTCCTTTTAGAGGG
TAACGCTAGGGCAGTTAAGTCCTTCATCCTCCCATGCCGAAAAACACAAA
CAAAATTATCATCGTTCTCGTCCTTCTCGTTTTCGTCGTGGCTGATGCTG
TGTGTCGTACAGCACGCCTGGAAACCCGCCTGTTCTCCTCAAGTGTGGGC
ACGCCGTGCTGCGGTCGAGCGTCAGCCGTCTGGGCCGCAACGGCTCGAAG
TTCAAGTGCCCCACGTGCCCCATGGAACAGACGGAGAGCGATACCTTGGC
CCTCACGCTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig131378:110..1172-

>mRNA_H-elongata_contig131378.2265.1 ID=mRNA_H-elongata_contig131378.2265.1|Name=mRNA_H-elongata_contig131378.2265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig131378:110..1172- (Himanthalia elongata Himel1 dioecious)
CTCACGATAATTCCACAGGCTGGGGTGCTGGCCCTGCCAACGTTGGTAAA
GATGGCGGCCGTTGTAAGGGGCAGCAATCAGGAGTGGGAGGGCATGCAAG
AACTGCCGCTGGAGGTCCCCCTGCCCCCGGGTTTGCGCTACCACAGCATG
TTTTCCTGTCCGGTTTCAAGAGAATCGAGCTCACGATAATTCCACAGGCT
GGGGTGCTGGCCCTGCCAACGTTGGTAAAGATGGCGGCCGTTGTAAGGGG
CAGCAATCAGGAGTGGGAGGGCATGCAAGAACTGCCGCTGGAGGTCCCCC
TGCCCCCGGGTTTGCGCTACCACAGCATGTTTTCCTGTCCGGTTTCAAGA
GAATCGAGCACGCCTGGAAACCCGCCTGTTCTCCTCAAGTGTGGGCACGC
CGTGCTGCGGTCGAGCGTCAGCCGTCTGGGCCGCAACGGCTCGAAGTTCA
AGTGCCCCACGTGCCCCATGGAACAGACGGAGAGCGATACCTTGGCCCTC
ACGCTCTGACACGCCTGGAAACCCGCCTGTTCTCCTCAAGTGTGGGCACG
CCGTGCTGCGGTCGAGCGTCAGCCGTCTGGGCCGCAACGGCTCGAAGTTC
AAGTGCCCCACGTGCCCCATGGAACAGACGGAGAGCGATACCTTGGCCCT
CACGCTCTGA
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