mRNA_H-elongata_contig131001.2241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131001.2241.1
Unique NamemRNA_H-elongata_contig131001.2241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: D7FIS7_ECTSI (Similar to G-protein coupled receptors n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIS7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.890e-40
Identity = 70/93 (75.27%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSA 279
            +DLLA+Q+W S VL LGM+ETGAQYFDYR+WN+EGTR  G + FAI+ GAAKR+LSLSLVLMVCMGYGVVRPSLGRDVH+IMA+AL+Y+++SA
Sbjct:  257 KDLLAVQLWASLVLFLGMVETGAQYFDYREWNLEGTRGVGARCFAIIFGAAKRSLSLSLVLMVCMGYGVVRPSLGRDVHKIMAMALIYFLSSA 349          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A7S4D7T8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7T8_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 4.110e-20
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITS 276
            ++LL IQMW + VL LGM ET  +YFD+  WN EG R+ G   F I++G +KRALS  LVLM  +GYGVV+PSLGR    ++AL   Y + S
Sbjct:  191 RELLGIQMWATLVLGLGMTETATKYFDFLAWNDEGRRNLGAMVFGIIMGVSKRALSRILVLMAVLGYGVVKPSLGRTRRNVLALGGAYLVFS 282          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: UPI0014552294 (transmembrane protein 87A-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014552294)

HSP 1 Score: 89.7 bits (221), Expect = 6.710e-19
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV 282
            +DLL IQ W  GV+LLG++E    Y +Y   N +GT  PG   FA LV   KR+L+  LV++V +GYG+ RP LGRD+H +M   ++Y+I S++
Sbjct:  313 RDLLRIQFWIGGVMLLGLLEKAVFYAEYEHLNTDGTSMPGAIIFAELVSCLKRSLARMLVVIVSLGYGITRPRLGRDLHWLMGAGMMYFILSSI 406          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A3B5M657_9TELE (Uncharacterized protein n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5M657_9TELE)

HSP 1 Score: 83.6 bits (205), Expect = 1.370e-18
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYY 267
            +DLL IQ W +GV+ LGMME      +Y + N+ G+ SPG+  FA L+ A KR L+  LV++V +GYG+++P LG  +HR++ L ++Y+
Sbjct:   23 KDLLRIQFWIAGVIFLGMMEKALFCAEYENTNVVGSASPGLLIFAELLSALKRTLARLLVIIVSLGYGIIKPRLGTVMHRVVGLGILYF 111          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A7S2WUX5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.030e-18
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    4 DLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYI 270
            +LL +QMW S V+ +GM+ETG ++ DY  +N EG R+ G+ +  ++ G  KRA+S  LV+MV +GY +V+PSLG  +HR++ L L+Y++
Sbjct:  252 ELLVLQMWISVVVGMGMLETGMKFADYLTFNAEGERNMGMLATGLVFGVTKRAVSRVLVVMVSLGYSIVKPSLGPQLHRVLLLGLIYFV 340          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A7S2XZ88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ88_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.240e-18
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVY 264
            +DLL +Q+W S VL LGM+ET  +YFD+  W+ EG R+ G   F ++ G  KRALS  LVL+V +GYGVV+PSLG     I+ L   Y
Sbjct:  247 KDLLPVQLWISFVLFLGMVETTTKYFDFLAWDEEGHRNLGAMVFGMISGVCKRALSRMLVLIVSLGYGVVKPSLGNTFRMILMLGAAY 334          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: UPI0018D5C4B5 (transmembrane protein 87A-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5C4B5)

HSP 1 Score: 86.3 bits (212), Expect = 1.110e-17
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV 282
            +DLL IQ W  GV+LLG++E    Y +Y + N  G   PG    A L+   KRAL+  LV++VC+GYG+ RP LG+D+H ++ + ++Y+I S+V
Sbjct:  334 RDLLRIQFWIGGVMLLGLLEKAVFYAEYENINNYGMSVPGAIIMAELISCFKRALARMLVVIVCLGYGITRPRLGKDLHWVLGVGMLYFIMSSV 427          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A7R8X921_9CRUS (Hypothetical protein n=2 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X921_9CRUS)

HSP 1 Score: 85.1 bits (209), Expect = 2.880e-17
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV 282
            +DLL IQ W  GV+ LGM+E    Y +++  N  GT  PG   FA L+  AKR LS  LV++V +G+G+V+P LG  +HR++ + ++Y+I ++V
Sbjct:  268 KDLLRIQFWIGGVIFLGMIEKAVYYAEFQSINSSGTSVPGAAVFAELISCAKRTLSRMLVIIVSLGFGIVKPRLGSMLHRVVGVGVLYFILASV 361          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A553R627_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553R627_9TELE)

HSP 1 Score: 85.1 bits (209), Expect = 2.900e-17
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV 282
            +DLL IQ W +GV+LLGM+E      +Y++ N  G+ SPG+  FA LV A KR L+  LV++V +GYG+V+P LG  +HR++ L ++Y+  +A+
Sbjct:  642 KDLLRIQFWIAGVILLGMIEKAVFCAEYQNTNTVGSASPGLLIFAELVSALKRTLARLLVIIVSLGYGIVKPRLGTVMHRVVGLGVLYFAFAAI 735          
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Match: A0A665WC10_ECHNA (Transmembrane protein 87A n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WC10_ECHNA)

HSP 1 Score: 79.7 bits (195), Expect = 5.000e-17
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 QDLLAIQMWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSLSLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV 282
            +DLL IQ W   V++LGM+E    Y +Y+    +G    G   FA L+ A KR+L+  LVL+V +GYG+V+P LG  VHR++A+ L+Y + S+V
Sbjct:   23 RDLLRIQFWIGAVIILGMLEKAVFYSEYQSIRYKGDYVQGAVIFAELLSALKRSLARILVLIVSLGYGIVKPRLGTTVHRLVAVGLLYLLFSSV 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131001.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS7_ECTSI3.890e-4075.27Similar to G-protein coupled receptors n=2 Tax=Ect... [more]
A0A7S4D7T8_HETAK4.110e-2052.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00145522946.710e-1945.74transmembrane protein 87A-like n=1 Tax=Asterias ru... [more]
A0A3B5M657_9TELE1.370e-1843.82Uncharacterized protein n=1 Tax=Xiphophorus couchi... [more]
A0A7S2WUX5_9STRA3.030e-1844.94Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S2XZ88_9STRA4.240e-1850.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0018D5C4B51.110e-1743.62transmembrane protein 87A-like n=1 Tax=Patiria min... [more]
A0A7R8X921_9CRUS2.880e-1742.55Hypothetical protein n=2 Tax=Darwinula stevensoni ... [more]
A0A553R627_9TELE2.900e-1744.68Uncharacterized protein n=1 Tax=Danionella translu... [more]
A0A665WC10_ECHNA5.000e-1743.62Transmembrane protein 87A n=1 Tax=Echeneis naucrat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131001contigH-elongata_contig131001:246..1502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1e-30
Seed eggNOG ortholog2880.D7FIS7
Preferred namePTM1
GOsGO:0000139,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005886,GO:0005887,GO:0006810,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0016197,GO:0016482,GO:0023052,GO:0031090,GO:0031224,GO:0031226,GO:0031984,GO:0031985,GO:0032580,GO:0038023,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060089,GO:0065007,GO:0071944,GO:0098588,GO:0098791
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG2568@1,KOG2568@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSimilar to G-protein coupled receptors
Ec32 orthologEc-20_003070.1
Exons2
Model size282
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131001.2241.1prot_H-elongata_contig131001.2241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131001 246..1481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.1362967-CDS-H-elongata_contig131001:245..4411622929778.1362967-CDS-H-elongata_contig131001:245..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131001 246..441 -
1691679154.0502439-CDS-H-elongata_contig131001:245..4411691679154.0502439-CDS-H-elongata_contig131001:245..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131001 246..441 -
1622929778.1526623-CDS-H-elongata_contig131001:1416..14811622929778.1526623-CDS-H-elongata_contig131001:1416..1481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131001 1417..1481 -
1691679154.0621214-CDS-H-elongata_contig131001:1416..14811691679154.0621214-CDS-H-elongata_contig131001:1416..1481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131001 1417..1481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.1636207-UTR-H-elongata_contig131001:1481..15021622929778.1636207-UTR-H-elongata_contig131001:1481..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131001 1482..1502 -
1691679154.0726557-UTR-H-elongata_contig131001:1481..15021691679154.0726557-UTR-H-elongata_contig131001:1481..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131001 1482..1502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131001.2241.1

>prot_H-elongata_contig131001.2241.1 ID=prot_H-elongata_contig131001.2241.1|Name=mRNA_H-elongata_contig131001.2241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MWTSGVLLLGMMETGAQYFDYRDWNIEGTRSPGVQSFAILVGAAKRALSL
SLVLMVCMGYGVVRPSLGRDVHRIMALALVYYITSAV
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mRNA from alignment at H-elongata_contig131001:246..1502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131001.2241.1 ID=mRNA_H-elongata_contig131001.2241.1|Name=mRNA_H-elongata_contig131001.2241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1257bp|location=Sequence derived from alignment at H-elongata_contig131001:246..1502- (Himanthalia elongata Himel1 dioecious)
CAGGACCTATTGGCGATTCAAATGTGGACCTCGGGTGTCCTGCTGCTGGG GATGATGGAAACCGGAGCCCAGTATTTCGACTACAGGTACACGCCTCCCC CCCCCCCCGGTTTGTTCGAGAAAAATGTTCGAGAAAAATCGTCTTTCTTG TCGCCCAATGGTCGGAATATACTTAATCATACTGCCTGTATATCATCTAT TAACCCTCTTGGAACTGGGTTTCAAGGTTTATATTGAATTTAGTATGTAA AAAAACAGATCGAGTTCCCTAGGGGTTAATATTGATAGCTGCTTTCACAC ACACCCACACACACCCACACACATTCTTATGAAATGTTGTGACGGTTGCA ATCACTGATCACTGATCTCTCTCTCCCATAGGGAGGAGGAATGAATCCGT CTCGTGAGACCAAATTCTCAGGCAGACGCGAAAGGGGGGACAGGGGAACA TTTATTTTCCCTGTTCAGCTGACCACGAGCAGGAGGCAACGAAACCCGGT TGATCTTACTCTGCTAAATGCGATGACCATACATAGATAACCTATATACC ATATATATAGCATATAAATATTGGTATGTCAGGGCTGGGTTGCGCGGTTA TGTGCATTTCAATAAATATGCACACACAACAAACATATACTACACTGCCC CTCCCATATTTGCGCACAAAAAAAATAAAACAGAGCCTGACAGTCCGGAA CGCGCCCCCCCCCTCCCGCCCTCCCCTCGCCCCCGATGACGTCATGTAGT CCAACCGAAGCAAATCAAATCAAATCAAATCAAAAAAAATATATATATAT ATAAGTAAAGTATTAAAACCGCCTAAAAAAAATACAGCCCTTGGTAAAAA CAAATACGAAATAGATTCAATTTTCATACCGGTATAGTAAAAACAAATGA AAATAAGTGGCATTATACTCCCTAACCCTTTTGGGACTGGATTTCGAGTT TTATATTGAATTTAGTGTGTAAAAAAACAGAAATGCAGTACGTTTTTTTA ATCCCCCGTTTTTTTTGTTTTTGTTTTTGTTTTGTTTGCAAATGTCCTAA AAATAAAAAAGAGACTGGAACATCGAAGGCACCCGGTCTCCGGGGGTGCA GTCGTTCGCTATCCTCGTTGGAGCGGCGAAGCGCGCGCTGTCGCTGTCTC TGGTGCTGATGGTGTGCATGGGGTACGGGGTCGTGAGGCCCTCCCTCGGC AGGGACGTGCATAGGATCATGGCGTTGGCTCTCGTGTACTACATTACCTC TGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig131001:246..1502-

>mRNA_H-elongata_contig131001.2241.1 ID=mRNA_H-elongata_contig131001.2241.1|Name=mRNA_H-elongata_contig131001.2241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig131001:246..1502- (Himanthalia elongata Himel1 dioecious)
ATGTGGACCTCGGGTGTCCTGCTGCTGGGGATGATGGAAACCGGAGCCCA
GTATTTCGACTACAGATGTGGACCTCGGGTGTCCTGCTGCTGGGGATGAT
GGAAACCGGAGCCCAGTATTTCGACTACAGAGACTGGAACATCGAAGGCA
CCCGGTCTCCGGGGGTGCAGTCGTTCGCTATCCTCGTTGGAGCGGCGAAG
CGCGCGCTGTCGCTGTCTCTGGTGCTGATGGTGTGCATGGGGTACGGGGT
CGTGAGGCCCTCCCTCGGCAGGGACGTGCATAGGATCATGGCGTTGGCTC
TCGTGTACTACATTACCTCTGCGGTGAGACTGGAACATCGAAGGCACCCG
GTCTCCGGGGGTGCAGTCGTTCGCTATCCTCGTTGGAGCGGCGAAGCGCG
CGCTGTCGCTGTCTCTGGTGCTGATGGTGTGCATGGGGTACGGGGTCGTG
AGGCCCTCCCTCGGCAGGGACGTGCATAGGATCATGGCGTTGGCTCTCGT
GTACTACATTACCTCTGCGGTG
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