mRNA_H-elongata_contig130678.2222.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI) HSP 1 Score: 121 bits (303), Expect = 8.440e-30 Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 PMEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGR 321
P + VDCDFL+VGAGSSGCVLASRLVR GLKVL+VEKG DA+ L ++V RPS ++ + L E F TVPQ L R + A G GGGGSSN+N GLY RGR
Sbjct: 6 PTADDTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGR 112
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7W6DPT1_9RHOB (Choline dehydrogenase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A7W6DPT1_9RHOB) HSP 1 Score: 76.6 bits (187), Expect = 4.620e-14 Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 PMEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
P + + D D++++GAGS+GCVLA+RL G +VL++E G DA ++ P + +E + + TVPQ N NR+++ PRG GGSS++NG +Y RG +
Sbjct: 39 PADAQETDHDYVIIGAGSAGCVLANRLTEDGARVLLLEAGGPDA---DAMISTPMRLIEL--WGTDFDWGYQTVPQENAANRQLYWPRGKTLGGSSSLNGMIYVRGNAS 142
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A0Q6TCZ3_9BURK (GMC family oxidoreductase n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q6TCZ3_9BURK) HSP 1 Score: 75.1 bits (183), Expect = 1.590e-13 Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
D+++VGAGS+GCV+A RL++ G VL++E G TDA+K ++ P+ F+ + T RS + E T PQ + R+M+ P+G GG S++N +Y RG A
Sbjct: 3 DYIVVGAGSAGCVIAHRLIKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWVYE---TTPQQHANGRKMYVPQGRMNGGGSSLNAMVYIRGAAA 97
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7C8HKW1_9CAUL (Choline dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8HKW1_9CAUL) HSP 1 Score: 74.7 bits (182), Expect = 2.190e-13 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
D+++VGAGS+GCVLA+RL G +V ++E G D++ L R+ + + T ++P F T PQ + NRRM PRG G GGSS+ING +Y RG
Sbjct: 11 DYVIVGAGSAGCVLAARLSEDGAARVALLEAGPKDSSLLVRMPAGAGRLIPT---KNPQNWGFWTEPQAHCDNRRMFWPRGKGWGGSSSINGMIYIRG 105
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1E4GT31_9CAUL (Choline dehydrogenase n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GT31_9CAUL) HSP 1 Score: 74.3 bits (181), Expect = 2.990e-13 Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
D++++GAGS+GCVLA+RL G KVL++E G D + + V P+ ++ ++P F T P+ NL NR++ PRG G GGSS+ING +Y RG
Sbjct: 6 DYIVIGAGSAGCVLANRLTEDGTTKVLLLEAGGKDKSLM---VTMPAGVGGLISKQNPFNWGFWTEPEPNLDNRKLWWPRGKGWGGSSSINGMIYIRG 100
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1S8FCU1_9BURK (GMC family oxidoreductase n=6 Tax=Comamonadaceae TaxID=80864 RepID=A0A1S8FCU1_9BURK) HSP 1 Score: 73.9 bits (180), Expect = 4.050e-13 Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 4 MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
ME + VD +++VGAGS+GCV+A RLV+ G VL++E G TDA+K ++ P+ F+ + T RS + E TV Q + R+M+ P+G GG S++N +Y RG A
Sbjct: 1 METQVVD--YIVVGAGSAGCVIAYRLVKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWIYE---TVAQPHANGRKMYVPQGRMTGGGSSLNAMVYIRGTAA 101
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A520TWP5_9GAMM (Choline dehydrogenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A520TWP5_9GAMM) HSP 1 Score: 73.9 bits (180), Expect = 4.070e-13 Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRRGLK-VLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
D+++VGAGSSGCV+A+RL G K VLI+E G D + PS F + V +S L F T P+ NR+++ PRG G GGSS+IN +Y RG
Sbjct: 6 DYVVVGAGSSGCVMANRLSEDGKKSVLILEAGGKDT---NFFIHMPSGFSQIVPNKSDLNYGFETEPEETTDNRKLYWPRGRGWGGSSSINAMVYIRG 100
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A4R1YTY7_9RHOB (Choline dehydrogenase n=1 Tax=Rhodovulum steppense TaxID=540251 RepID=A0A4R1YTY7_9RHOB) HSP 1 Score: 73.6 bits (179), Expect = 5.560e-13 Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 19 VDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
++ DF++VGAGS+GCVLASRL G VL++E G TDA G L+ P+ L + F T P+ +L RR+ PRG GGSS+ING +Y RG
Sbjct: 1 MEADFVIVGAGSAGCVLASRLSETGASVLVIEHGGTDA---GPLIQMPAA-LSYPMNMARYDWGFRTEPEPHLGGRRLACPRGKVIGGSSSINGMVYVRG 96
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1V1PTS8_9PROT (Choline dehydrogenase n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PTS8_9PROT) HSP 1 Score: 73.6 bits (179), Expect = 5.570e-13 Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRRG-LKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
D+++VGAGS+GCVLA+RL +KV I+E G +A G LV P+ + + F TVPQ ++ RR++ PRG G GGSS+ING +Y RG
Sbjct: 11 DYVIVGAGSAGCVLANRLSEDPTVKVAILEAGGANA---GLLVKMPAGVGNLIASKGASNWGFETVPQAHMDGRRLYQPRGRGWGGSSSINGMIYIRG 105
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A3E0LJ55_9CHRO (Choline dehydrogenase n=6 Tax=Bacteria TaxID=2 RepID=A0A3E0LJ55_9CHRO) HSP 1 Score: 72.8 bits (177), Expect = 1.040e-12 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 28 DFLLVGAGSSGCVLASRLVRR-GLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
D++++GAGS+GCVLA+RL ++VL++E G D + L R+ P+ + G++ F T PQ +L NR ++ PRG G GGSS+ING +Y RG
Sbjct: 11 DYIIIGAGSAGCVLANRLSEDPSVRVLVLEAGGRDNSFLVRM---PAGVGTLIKGKNAHNWAFTTEPQTHLNNRPLYWPRGKGWGGSSSINGMIYIRG 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130678.2222.1 >prot_H-elongata_contig130678.2222.1 ID=prot_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVback to top mRNA from alignment at H-elongata_contig130678:427..753- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130678.2222.1 ID=mRNA_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig130678:427..753- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130678:427..753- >mRNA_H-elongata_contig130678.2222.1 ID=mRNA_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig130678:427..753- (Himanthalia elongata Himel1 dioecious)back to top |