mRNA_H-elongata_contig13052.2215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13052.2215.1
Unique NamemRNA_H-elongata_contig13052.2215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 5.280e-58
Identity = 148/402 (36.82%), Postives = 210/402 (52.24%), Query Frame = 3
Query:    3 QAVVIDISLWNEGAEGGEVSHGLGIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSSRAPV--------AKLLLFSDCEPVVQSQDSAE---EQPLDAAVCVLVPLFSRDQCLHGLL*LL*LPIPLGATGDIDFFFGGWS-----HPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD--GVLGARVSSSSGRVDAVEEGVC---TVSLT-----------CGDVGDSAK-----NTTTL-----------EEDESLSEMSEPLL 1064
            QAVVID+S W   A GGEV+HGLG+I A+FG+A+ VGP+ GG  +EDH   ACW+ A MS L +LSL+F+GW ETAPA    +  A           KL        +V      +   E  L   + V++  FS    +  +           +  DI  FF  +        GL  R   P  R     G        ++++ L+G+A +GWM Y +++A  +QYIT+PCIQ +MA  V  + QG LQGA+  LR V+QG+A  +YGQ+FS G+S   +NALGFV+PGLPLF ++ C   AL +A  ALR+    G    + +++   V+A E+G+    TV +T            GD G S K     N T L           +E++++S+MSEPLL
Sbjct:  163 QAVVIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSVLGVLSLKFFGWEETAPAATQGAGGATANASAGGGWKKLCARGSSSRIVNPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPK-RLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRKAGETGAADPKSTANPSDVEAEEDGMMASNTVDVTDSSTATPAEDSSGDGGRSGKEAPAANPTALMQPASRVTGLGDEEDTMSDMSEPLL 563          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.750e-17
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  576 GVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD 899
            G+  RGWMLYP ++  A+Q IT+PC+QAIMA  V    QG LQGA+ +LR+V +G+AA V+ QVFS G S  F+ A        P FL+   SL++L VA   LR+LD
Sbjct:  444 GLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEA--------PFFLATAISLVSLAVAWWPLRKLD 543          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9AH41_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9AH41_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 7.490e-10
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALR 890
            + +APRGW+LY +I  +A+  I  P IQ++M+R VD + QG+LQGAI +LR +   +   ++ Q+F+  +S      L    PG P +L+A   L +L++A+   R
Sbjct:  310 FALAPRGWVLYSVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMVGPVLFTQIFALAISPRASIHL----PGAPYYLAAVLLLSSLLLAAYVTR 411          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9FSN8_9BACT (Tetracycline resistance MFS efflux pump n=4 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V9FSN8_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 7.450e-9
Identity = 78/284 (27.46%), Postives = 114/284 (40.14%), Query Frame = 3
Query:   72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGV------------APRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            G+I+A+FG+   VGP  GG     +     W  A +S    L   F       P RR  S+     P+  L LF                P  A + V+  L+    Q L  +  L           DI F              G  +      + G   + +    SVL G+            A RGW+L  +I  +A+  I  P +Q++M+R VD + QG+LQGAI +LR V       ++ QVF+F +S  F   L    PG P FL+    L +L++A
Sbjct:  146 GLISAAFGLGFIVGPAVGGYLGNINLRFPFWAAAALSLANALYGYFILPESLPPERRAKSAWQMANPLGSLNLF-------------RSHPELAGLAVVTTLYYLAHQALQTVYVLYTEYRYAWNQRDIGFSLAVV---------GVSAAIVSGVLVGPFVKHFGERRSVLCGLFFGTLGFASFALATRGWILLAVIPFIALWGIAAPAMQSLMSRHVDPSSQGKLQGAINSLRAVTGMAGPILFTQVFAFAISARFSLHL----PGAPYFLAGLLLLSSLLLA 403          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V8Y548_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8Y548_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 1.340e-8
Identity = 72/284 (25.35%), Postives = 117/284 (41.20%), Query Frame = 3
Query:   72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGV------------APRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            G ++A+ G+   +GP  GG     H     W+ AG+S +  L   F       P RR  S+     P+  L L      +             A + V+V L+      L  +  L  +     + GD+                G  +      + G   + +    SVL+G+            A RGW+LY +I  +A+  I  P +Q++M+R VD + QG+LQGAI +LR V       ++ QVF+  ++   +  L    PG P +L+A   L +L+ A
Sbjct:  149 GYVSAALGLGFVIGPAVGGYLGNFHIRAPFWVAAGLSLVNSLYGFFVLPESLPPERRAKSAWHMANPLRSLTLLRSHAQL-------------AGLSVVVTLYYLAHTSLPSMWALYTMKRYDWSKGDVGLSLAVV---------GVCASLISGVLVGPFVKRFGERRSVLFGLLCGTLGFAGFALATRGWVLYAVIPFIALWGIAAPAVQSLMSRRVDHSSQGKLQGAINSLRAVTGMAGPVLFTQVFALAIAPATRIHL----PGAPYYLAAILLLSSLLQA 406          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9BWC4_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BWC4_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.170e-8
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            + +A  GWMLY +I  +A+  I  P IQ++M+R VD + QG+LQGAI +LR +       ++ QVF+  +S   +      VPG P +L+A   L +L++A
Sbjct:  310 FALAASGWMLYAVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMAGPVLFTQVFALAISPQARIH----VPGAPYYLAAVLLLSSLLLA 406          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: UPI0019CC5A9D (MFS transporter n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019CC5A9D)

HSP 1 Score: 62.0 bits (149), Expect = 4.360e-8
Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  567 VLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            +L+G+AP+GWM++  ++   +  I  P +Q I+++ V +N QG LQGA+T+L  +   I   V   +F++    T KN+L ++ PG   +L+A   L+ L +A
Sbjct:   30 ILFGLAPKGWMMFLFLIPYCLGGIAGPALQGIISKQVPDNEQGELQGALTSLMSLTAIIGPLVMNNLFAYA---TNKNSLIYL-PGASFYLAAVLVLIGLFLA 128          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9BGQ2_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BGQ2_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.860e-7
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            + +A RGW++  +I  +A+  I  P IQ++M+R VD + QG+LQGAI +LR V       ++ Q+F+  +S  +   L    PG P FL+A   + +L++A
Sbjct:  333 FALAARGWIILSVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAVTGMAGPPLFTQIFAIAISPKYAIHL----PGAPYFLAALLLMSSLLLA 429          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A1Q7L6L1_9BACT (Tetracycline resistance MFS efflux pump n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7L6L1_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 2.360e-7
Identity = 69/282 (24.47%), Postives = 111/282 (39.36%), Query Frame = 3
Query:   72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*----------LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
            G+++A+FG+   +GP  GG     +     W  A +S    L   F       P RR  S+     P+  L LF                P  A + V+  L+    Q L  +  L            + + L   G       G        R G           G           V +G+A RGW++  +I  +A+  I  P +Q++M++ VD   QG+LQGAI +LR +       ++G+VF+  +S   +  L    PG P +L+    L +L++A
Sbjct:  149 GLVSAAFGLGFVIGPAVGGYLGNINLRFPFWAAAILSLTNTLYGFFILPESLPPERRAKSAWHMANPMGSLNLF-------------RSHPQLAGLAVVTTLYYLAHQSLQTVYVLYTEYRYAWNQRDVGLSLAVVGVSAAIVSGVLVGPFVKRFGERHSLLSGLFFG-------TLGFVSFGLATRGWIMLAVIPFIALWGIAAPAMQSLMSQRVDPTSQGKLQGAINSLRAITGMAGPVLFGRVFALAISPRARIHL----PGTPYYLAGLLLLSSLLLA 406          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: Q135K9_RHOPS (Major facilitator superfamily MFS_1 n=2 Tax=Rhodopseudomonas TaxID=1073 RepID=Q135K9_RHOPS)

HSP 1 Score: 62.8 bits (151), Expect = 4.090e-7
Identity = 74/293 (25.26%), Postives = 116/293 (39.59%), Query Frame = 3
Query:   72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRF-------------YGWSETAP--ARRVNSSRAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFSR-----DQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRR----GWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVAS 878
            G + A+FG+    GP  GGL       L  W+ AG+S    L   F             + W    P  A R+  S A +A + L   C  V              A+  +  L+S      DQ   GL     L      T  +    GG   P +              +G QR +    G  A   ++Y +AP G + +  I  M +  I  P    +M RLV  + QG+LQGAIT+L+ +A+ I   ++  +F++ +      AL    PG P  L+    +++ ++A+
Sbjct:  151 GKVGAAFGLGFIFGPAIGGLLGGIDPRLPFWVAAGLSLCNALYGLFVLPESLPPERRSPFRWRSANPVGAVRLLGSNARLAAMALVEFCAEVAH-----------VALPAIFVLYSTYRYGWDQTTVGLA----LAFVGVCTAIVQ---GGLVGPAVKR------------LGEQRAQIIGYGGGALGFLIYALAPTGALFWIGIPVMTLWGIAGPATSGMMTRLVSPDQQGQLQGAITSLKSIAELIGPFLFTLIFAYFIGGNAPLAL----PGAPFLLAGLLLMVSALIAA 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH6_ECTSI5.280e-5836.82Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
D7FNH7_ECTSI1.750e-1749.07Tetracycline-efflux transporter n=1 Tax=Ectocarpus... [more]
A0A2V9AH41_9BACT7.490e-1036.79Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
A0A2V9FSN8_9BACT7.450e-927.46Tetracycline resistance MFS efflux pump n=4 Tax=un... [more]
A0A2V8Y548_9BACT1.340e-825.35Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
A0A2V9BWC4_9BACT3.170e-837.62Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
UPI0019CC5A9D4.360e-833.98MFS transporter n=1 Tax=Flavobacterium sp. TaxID=2... [more]
A0A2V9BGQ2_9BACT1.860e-735.64Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
A0A1Q7L6L1_9BACT2.360e-724.47Tetracycline resistance MFS efflux pump n=2 Tax=un... [more]
Q135K9_RHOPS4.090e-725.26Major facilitator superfamily MFS_1 n=2 Tax=Rhodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13052contigH-elongata_contig13052:26..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog2880.D7FNH6
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetracycline resistance protein, TetA/multidrug resistance protein MdtG
Ec32 orthologEc-01_005430.1
Exons7
Model size1172
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.7243257-UTR-H-elongata_contig13052:25..1091622929775.7243257-UTR-H-elongata_contig13052:25..109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 26..109 -
1691679153.1938183-UTR-H-elongata_contig13052:25..1091691679153.1938183-UTR-H-elongata_contig13052:25..109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 26..109 -
1622929775.7760797-UTR-H-elongata_contig13052:1488..15301622929775.7760797-UTR-H-elongata_contig13052:1488..1530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 1489..1530 -
1691679153.2342865-UTR-H-elongata_contig13052:1488..15301691679153.2342865-UTR-H-elongata_contig13052:1488..1530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 1489..1530 -
1622929775.7913861-UTR-H-elongata_contig13052:1741..19631622929775.7913861-UTR-H-elongata_contig13052:1741..1963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 1742..1963 -
1691679153.242663-UTR-H-elongata_contig13052:1741..19631691679153.242663-UTR-H-elongata_contig13052:1741..1963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 1742..1963 -
1622929775.8097892-UTR-H-elongata_contig13052:3076..31351622929775.8097892-UTR-H-elongata_contig13052:3076..3135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3077..3135 -
1691679153.2519414-UTR-H-elongata_contig13052:3076..31351691679153.2519414-UTR-H-elongata_contig13052:3076..3135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3077..3135 -
1622929775.8504627-UTR-H-elongata_contig13052:3149..33941622929775.8504627-UTR-H-elongata_contig13052:3149..3394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3150..3394 -
1691679153.2659087-UTR-H-elongata_contig13052:3149..33941691679153.2659087-UTR-H-elongata_contig13052:3149..3394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3150..3394 -
1622929775.8651109-UTR-H-elongata_contig13052:3919..39471622929775.8651109-UTR-H-elongata_contig13052:3919..3947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3920..3947 -
1691679153.273755-UTR-H-elongata_contig13052:3919..39471691679153.273755-UTR-H-elongata_contig13052:3919..3947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13052 3920..3947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.7353551-CDS-H-elongata_contig13052:109..3281622929775.7353551-CDS-H-elongata_contig13052:109..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 110..328 -
1691679153.2051482-CDS-H-elongata_contig13052:109..3281691679153.2051482-CDS-H-elongata_contig13052:109..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 110..328 -
1622929775.7478018-CDS-H-elongata_contig13052:862..10271622929775.7478018-CDS-H-elongata_contig13052:862..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 863..1027 -
1691679153.2153108-CDS-H-elongata_contig13052:862..10271691679153.2153108-CDS-H-elongata_contig13052:862..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 863..1027 -
1622929775.7623944-CDS-H-elongata_contig13052:1380..14881622929775.7623944-CDS-H-elongata_contig13052:1380..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 1381..1488 -
1691679153.2243946-CDS-H-elongata_contig13052:1380..14881691679153.2243946-CDS-H-elongata_contig13052:1380..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13052 1381..1488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13052.2215.1prot_H-elongata_contig13052.2215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13052 110..1488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13052.2215.1

>prot_H-elongata_contig13052.2215.1 ID=prot_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIA
AAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQL
DGVLGARVSSSSGRVDAVEEGVCTVSLTCGDVGDSAKNTTTLEEDESLSE
MSEPLLGDTAPET*
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mRNA from alignment at H-elongata_contig13052:26..3947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13052.2215.1 ID=mRNA_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3922bp|location=Sequence derived from alignment at H-elongata_contig13052:26..3947- (Himanthalia elongata Himel1 dioecious)
GCCAGGCCGTCGTTATCGACATTTCCCTGTGAGTGCGTGCCGATAGCTTC GAGGTGTATAGATCGTCGTTGAAGGCGATTGTGGGAGAGTGAAATCGAGG GGTGCCCCAGGACGGATTGACTTGGAGCTTGGCCCCCTTTTTCCCCCTGC CAGGAGGGTATCCCCCCCCCCCCCCAGCCCCCTTCCCGACGAATCAGCGT GTGTGTAGGCTCACTAAAATAATGTGGCTTCGCCATTCTGCAGACACGCA GATCGAACGGTGCCTATTCGAGTAGCAAACATTATGCAGACGTCCTCGAC TCATACGGCGACTTAAGGTCTTATTTGTACCGTGGCGTACCCCGGAAACA AAGCGGTCTCGGCGTTGTTCACCGCAAAGCTCCCTCGAAGTATCATGCAA CCTCGAAAAGCAACCACGTGGTCCCGCTGTGGCGTACACTGACGACCCCG TGCTTTACCACCACTGTTGTACGTATGCTGTGAATACCCTCTCGAATGCC TCCTGCAACACTTCCTGTGGGTCTGTGATGGCCAAATTGATAACGTTCGA CAGCTGGAATGAAGGCGCCGAGGGCGGGGAGGTCTCACACGGTCTCGGCA TCATCGCCGCATCGTTTGGGATAGCCCTCGGTGTCGGACCGATCTTTGGG GGGTTGGCCAGCGAAGATCACCGGAGCTTGGCATGCTGGATTTGCGCGGG AATGTCTGCGTTGGCTCTCTTGTCTCTCCGTTTTTATGGCTGGAGCGAGA CGGCACCCGCGAGGAGGGTGAATAGCAGCAGGGCCCCTGTAGCCAAGCGT TGCTACGGAAAGTGCTCCTCTTTTCAGATTGTGAACCCGTTGTCCAATCT CAAGATTCTGCTGAAGAACAGGTGGGTTCCCGGGACTTTTCGGGACTATA AAGAGCTACGAGTCATTCTCGCCGAAGTGCTTGGGGTTGGGTATGACGAC TATGGTTACCCCACCTCATGTCTTAGATTTTTCGGATGGCTCTCTCCCTC GTGTGACAGAAATGAGAAATGCGAAGTGTTTTTCTCCCGTATAGCTAACG TTAAGGTCTAAAAGCGTGGTCTTCATGCCGTGTTTGTTCTATCTAACTAA TATTTTTTGCGCTCCGAACGGTTCATTGTGTCTTTTATTTACTATTTACA ATGTATTTTGTAGACCCCATATTAATATTCCCATTAGCATCGATGTTTTG CCAGAAGAGCCCCCCGCCCTTGCCTTTAACTTCGTTTTTACGTTAAATAT GACAAATAAAAGAATAAGAGTACTGTACTGGTACGGGGTTTCTGTAGCAG GGAGCTATTATCGTGTTATATCGTGTTTTCATGAGTCCTCTACGTCATCG GGGCGAAGTTCATCTCAGCGATGGAACTCACGTGCATATCGTCGCCATAC CCGTTTGTTCACAAGCGGCGCTCGTGCTACCTTTCGTGGTCATCACATAT TAGATGGCCTATAGTATAGTATTGTATATAGGTTATAGTATAGTATAGTA TATAGGTTATAGTATAGTATAGTATATTATATAGGTTATAGTATAGTATA GTATATAGGTTATAGTATAGTATAGTAAATAGGTTATAGTATAGTATAGT ATATAGGTTATAGTATAGTATAGTAAATAGGTTATAGTATGGAACAACTG GGTATGGTTGCCAATCCTGCTTGCGGTCAGCTGAACGGGGGGAAAATGAA ATGTTCCTTGTCCCTGTTCGCGTCTGAGAATTTGGTCACGCGAGACGGGT TCGGCCGTCCCGTCCCGCGTCAGCTGTTACCCAGTGGAAGACCCGACTTC CTGTGGTGATATTTTCCTGAGGCACACTAAAAACTGCATGTGTAGCTGCT GCTCAACTGTCTATGCTGGCTATACTATACTATACTATAACCTATATACT ATGATAGCTATGATAGCTATTCCACACACGATTCTGAGGCATCCCTTCGC CGTTTTCTTCCATCCCACGCTCCCGCCAGCACAGCCTCTTGATGCAGCTG TCTGTGTGCTTGTGCCTCTATTCTCTCGCGACCAATGTCTACACGGTTTA CTATAACTACTTTGACTACCGATACCACTGGGGGCCACTGGAGATATCGA TTTTTTTTTCGGTGGTTGGAGTCATCCTGGCCTTTACCACCGGCGTGGGC ATCCGAGTCCTCGTCCCGAAGCGACTGTCGGAGGGCAGAGGCGTCGCGGT TGGCATGCTGATGCATGTGCGTGGGGGAGTCAACCGTGTACAGCGACAGC CGTCTCGGTCGGAGACGGGTTCAAAGGCGTTAGAAGGCTGTACCGCCGAA AGATTTGACACGGCATGGAGTATATTATTTGAATGTCGAGACAGTTGTTA CTCAGCAATAGCGGCTGCTAGCTGCATTGCATGCCGTGTTTGACCGCGGT CTGATGGCGCATGACAGGCAACGGCATCGGTCCTGTACGGCGTCGCACCT CGAGGATGGATGCTGTATCCCATCATCTTGGCCATGGCCGTGCAGTACAT CACGGACCCGTGTATTCAGGCGATCATGGCGAGGCTGGTCGATGAAAATT GTCAAGGCAGACTGCAGGTGCGCACGACGAGAGCAAACCGCAGCGGAGAT GCAGAGAACCTATCCACATTAGAGCTAATCAATCCACTAGAATTATTTAT CTGGTGAGCCGGTCGTGGGATCTTCCGATCTTGAACGGAAAACATTTAGT TGCTACCTGGTATCAACCCGGAGGACCGACGACGCATTCTGTGAAAACAT TTGTGTTCCATCACGATCGGGGTGTGACCTCCTAGAAGTGGTCGTAGACT TAGTTTGCTTTGTACATATATGTTCAAACCGACGGGGGTTCCTTTCCTTG CCCTTGCATTTGCTTTTGTCTTTGCCCCTTTCTTTTTCTTCTCTTCGCCG GCTGGTCGCGCGCTCCTCAGGGGGCGATAACGACGCTTCGAATCGTAGCA CAGGGGATCGCAGCCGCAGTTTACGGCCAAGTGTTCTCTTTCGGCTTGTC CAACACATTCAAGAACGCGCTGGGTTTCGTTGTGCCCGGGCTTCCATTGT TCTTGTCGGCACAGTGCAGCTTGATGGCATTGGTGGTTAGTGATCCGCTC CCCCCCGGAAGTAGAGTAGCCTGGTGTAACGGATAACTTGTCTTCTCGGG GCGGTGGTCGGTAGTCTGCTTTTGCCGCCGCCCTTGCTGGGTTTAGGGCG TACCGGTACGAGGCACAAGACCCGTCTAGTGCGCACCGAGAAACCTCAAC AAGAAAAATGCCTGGTTATCGTGTTGAGATAAAGCTCCGCTCAGGTATCA GTCATAAAGGCAGGGTCGGCTATCTACCAGAGGGAAGATCATTTTGTGCC CACCCAATTTCGGTGCCCGCTGCTTTGAATGTCGTCATCGTGAGTATGGA CGTGGAAGCGACATACATGTAGGATTTTGCATTTATCGTACTGCCTCAGC TCGGGTTAGCTCGGGTTACACGGGCCGCCTGGAAGAAGCGTAAAAGTACC GTGTGCCGCCGCCGCCGGAACAATGGCGCAAAATTATTTGTGCGCAACAT TTCTTTTTTTTCGCGGCCTTGTCGGTGATCGTGAATCGCTCTTGACGTGT GACGTTCCTTTCGAAACAGGTCGCGTCGTGCGCCCTGCGTCAGCTTGATG GCGTGTTAGGTGCGCGGGTAAGCTCATCCTCAGGCAGAGTGGATGCCGTC GAGGAGGGGGTGTGCACCGTGTCGCTCACTTGTGGGGATGTCGGTGATTC AGCAAAGAATACCACCACGCTCGAAGAGGACGAGTCCTTGTCAGAAATGT CGGAACCACTGTTAGGCGACACTGCACCGGAGACGTGAGACGGCCGCGAT ATAGGGTACAGGGTTGAAGACATCGCTCACCTCTGAGAATACAACAATCG GTTGTTTACGGGAGGGTCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig13052:26..3947-

>mRNA_H-elongata_contig13052.2215.1 ID=mRNA_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig13052:26..3947- (Himanthalia elongata Himel1 dioecious)
ATGCTGTATCCCATCATCTTGGCCATGGCCGTGCAGTACATCACGGACCC
GTGTATTCAGGCGATCATGGCGAGGCTGGTCGATGAAAATTGTCAAGGCA
GACTGCAGATGCTGTATCCCATCATCTTGGCCATGGCCGTGCAGTACATC
ACGGACCCGTGTATTCAGGCGATCATGGCGAGGCTGGTCGATGAAAATTG
TCAAGGCAGACTGCAGGGGGCGATAACGACGCTTCGAATCGTAGCACAGG
GGATCGCAGCCGCAGTTTACGGCCAAGTGTTCTCTTTCGGCTTGTCCAAC
ACATTCAAGAACGCGCTGGGTTTCGTTGTGCCCGGGCTTCCATTGTTCTT
GTCGGCACAGTGCAGCTTGATGGCATTGGTGGGGGCGATAACGACGCTTC
GAATCGTAGCACAGGGGATCGCAGCCGCAGTTTACGGCCAAGTGTTCTCT
TTCGGCTTGTCCAACACATTCAAGAACGCGCTGGGTTTCGTTGTGCCCGG
GCTTCCATTGTTCTTGTCGGCACAGTGCAGCTTGATGGCATTGGTGGTCG
CGTCGTGCGCCCTGCGTCAGCTTGATGGCGTGTTAGGTGCGCGGGTAAGC
TCATCCTCAGGCAGAGTGGATGCCGTCGAGGAGGGGGTGTGCACCGTGTC
GCTCACTTGTGGGGATGTCGGTGATTCAGCAAAGAATACCACCACGCTCG
AAGAGGACGAGTCCTTGTCAGAAATGTCGGAACCACTGTTAGGCGACACT
GCACCGGAGACGTGAGTCGCGTCGTGCGCCCTGCGTCAGCTTGATGGCGT
GTTAGGTGCGCGGGTAAGCTCATCCTCAGGCAGAGTGGATGCCGTCGAGG
AGGGGGTGTGCACCGTGTCGCTCACTTGTGGGGATGTCGGTGATTCAGCA
AAGAATACCACCACGCTCGAAGAGGACGAGTCCTTGTCAGAAATGTCGGA
ACCACTGTTAGGCGACACTGCACCGGAGACGTGA
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