mRNA_H-elongata_contig13052.2215.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 207 bits (528), Expect = 5.280e-58 Identity = 148/402 (36.82%), Postives = 210/402 (52.24%), Query Frame = 3
Query: 3 QAVVIDISLWNEGAEGGEVSHGLGIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSSRAPV--------AKLLLFSDCEPVVQSQDSAE---EQPLDAAVCVLVPLFSRDQCLHGLL*LL*LPIPLGATGDIDFFFGGWS-----HPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD--GVLGARVSSSSGRVDAVEEGVC---TVSLT-----------CGDVGDSAK-----NTTTL-----------EEDESLSEMSEPLL 1064
QAVVID+S W A GGEV+HGLG+I A+FG+A+ VGP+ GG +EDH ACW+ A MS L +LSL+F+GW ETAPA + A KL +V + E L + V++ FS + + + DI FF + GL R P R G ++++ L+G+A +GWM Y +++A +QYIT+PCIQ +MA V + QG LQGA+ LR V+QG+A +YGQ+FS G+S +NALGFV+PGLPLF ++ C AL +A ALR+ G + +++ V+A E+G+ TV +T GD G S K N T L +E++++S+MSEPLL
Sbjct: 163 QAVVIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSVLGVLSLKFFGWEETAPAATQGAGGATANASAGGGWKKLCARGSSSRIVNPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPK-RLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRKAGETGAADPKSTANPSDVEAEEDGMMASNTVDVTDSSTATPAEDSSGDGGRSGKEAPAANPTALMQPASRVTGLGDEEDTMSDMSEPLL 563
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.750e-17 Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query: 576 GVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD 899
G+ RGWMLYP ++ A+Q IT+PC+QAIMA V QG LQGA+ +LR+V +G+AA V+ QVFS G S F+ A P FL+ SL++L VA LR+LD
Sbjct: 444 GLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEA--------PFFLATAISLVSLAVAWWPLRKLD 543
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9AH41_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9AH41_9BACT) HSP 1 Score: 71.2 bits (173), Expect = 7.490e-10 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 3
Query: 573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALR 890
+ +APRGW+LY +I +A+ I P IQ++M+R VD + QG+LQGAI +LR + + ++ Q+F+ +S L PG P +L+A L +L++A+ R
Sbjct: 310 FALAPRGWVLYSVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMVGPVLFTQIFALAISPRASIHL----PGAPYYLAAVLLLSSLLLAAYVTR 411
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9FSN8_9BACT (Tetracycline resistance MFS efflux pump n=4 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V9FSN8_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 7.450e-9 Identity = 78/284 (27.46%), Postives = 114/284 (40.14%), Query Frame = 3
Query: 72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGV------------APRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
G+I+A+FG+ VGP GG + W A +S L F P RR S+ P+ L LF P A + V+ L+ Q L + L DI F G + + G + + SVL G+ A RGW+L +I +A+ I P +Q++M+R VD + QG+LQGAI +LR V ++ QVF+F +S F L PG P FL+ L +L++A
Sbjct: 146 GLISAAFGLGFIVGPAVGGYLGNINLRFPFWAAAALSLANALYGYFILPESLPPERRAKSAWQMANPLGSLNLF-------------RSHPELAGLAVVTTLYYLAHQALQTVYVLYTEYRYAWNQRDIGFSLAVV---------GVSAAIVSGVLVGPFVKHFGERRSVLCGLFFGTLGFASFALATRGWILLAVIPFIALWGIAAPAMQSLMSRHVDPSSQGKLQGAINSLRAVTGMAGPILFTQVFAFAISARFSLHL----PGAPYFLAGLLLLSSLLLA 403
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V8Y548_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8Y548_9BACT) HSP 1 Score: 67.4 bits (163), Expect = 1.340e-8 Identity = 72/284 (25.35%), Postives = 117/284 (41.20%), Query Frame = 3
Query: 72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGV------------APRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
G ++A+ G+ +GP GG H W+ AG+S + L F P RR S+ P+ L L + A + V+V L+ L + L + + GD+ G + + G + + SVL+G+ A RGW+LY +I +A+ I P +Q++M+R VD + QG+LQGAI +LR V ++ QVF+ ++ + L PG P +L+A L +L+ A
Sbjct: 149 GYVSAALGLGFVIGPAVGGYLGNFHIRAPFWVAAGLSLVNSLYGFFVLPESLPPERRAKSAWHMANPLRSLTLLRSHAQL-------------AGLSVVVTLYYLAHTSLPSMWALYTMKRYDWSKGDVGLSLAVV---------GVCASLISGVLVGPFVKRFGERRSVLFGLLCGTLGFAGFALATRGWVLYAVIPFIALWGIAAPAVQSLMSRRVDHSSQGKLQGAINSLRAVTGMAGPVLFTQVFALAIAPATRIHL----PGAPYYLAAILLLSSLLQA 406
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9BWC4_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BWC4_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 3.170e-8 Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 3
Query: 573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
+ +A GWMLY +I +A+ I P IQ++M+R VD + QG+LQGAI +LR + ++ QVF+ +S + VPG P +L+A L +L++A
Sbjct: 310 FALAASGWMLYAVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMAGPVLFTQVFALAISPQARIH----VPGAPYYLAAVLLLSSLLLA 406
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: UPI0019CC5A9D (MFS transporter n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019CC5A9D) HSP 1 Score: 62.0 bits (149), Expect = 4.360e-8 Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = 3
Query: 567 VLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
+L+G+AP+GWM++ ++ + I P +Q I+++ V +N QG LQGA+T+L + I V +F++ T KN+L ++ PG +L+A L+ L +A
Sbjct: 30 ILFGLAPKGWMMFLFLIPYCLGGIAGPALQGIISKQVPDNEQGELQGALTSLMSLTAIIGPLVMNNLFAYA---TNKNSLIYL-PGASFYLAAVLVLIGLFLA 128
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9BGQ2_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BGQ2_9BACT) HSP 1 Score: 63.9 bits (154), Expect = 1.860e-7 Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 3
Query: 573 YGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
+ +A RGW++ +I +A+ I P IQ++M+R VD + QG+LQGAI +LR V ++ Q+F+ +S + L PG P FL+A + +L++A
Sbjct: 333 FALAARGWIILSVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAVTGMAGPPLFTQIFAIAISPKYAIHL----PGAPYFLAALLLMSSLLLA 429
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A1Q7L6L1_9BACT (Tetracycline resistance MFS efflux pump n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7L6L1_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 2.360e-7 Identity = 69/282 (24.47%), Postives = 111/282 (39.36%), Query Frame = 3
Query: 72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRFYGWSETAPARRVNSS---RAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFS-RDQCLHGLL*LL*----------LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRRGWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 875
G+++A+FG+ +GP GG + W A +S L F P RR S+ P+ L LF P A + V+ L+ Q L + L + + L G G R G G V +G+A RGW++ +I +A+ I P +Q++M++ VD QG+LQGAI +LR + ++G+VF+ +S + L PG P +L+ L +L++A
Sbjct: 149 GLVSAAFGLGFVIGPAVGGYLGNINLRFPFWAAAILSLTNTLYGFFILPESLPPERRAKSAWHMANPMGSLNLF-------------RSHPQLAGLAVVTTLYYLAHQSLQTVYVLYTEYRYAWNQRDVGLSLAVVGVSAAIVSGVLVGPFVKRFGERHSLLSGLFFG-------TLGFVSFGLATRGWIMLAVIPFIALWGIAAPAMQSLMSQRVDPTSQGKLQGAINSLRAITGMAGPVLFGRVFALAISPRARIHL----PGTPYYLAGLLLLSSLLLA 406
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: Q135K9_RHOPS (Major facilitator superfamily MFS_1 n=2 Tax=Rhodopseudomonas TaxID=1073 RepID=Q135K9_RHOPS) HSP 1 Score: 62.8 bits (151), Expect = 4.090e-7 Identity = 74/293 (25.26%), Postives = 116/293 (39.59%), Query Frame = 3
Query: 72 GIIAASFGIALGVGPIFGGLASEDHRSLACWICAGMSALALLSLRF-------------YGWSETAP--ARRVNSSRAPVAKLLLFSDCEPVVQSQDSAEEQPLDAAVCVLVPLFSR-----DQCLHGLL*LL*LPIPLGATGDIDFFFGGWSHPGLYHRRGHPSPRPEATVGGQRRR----GWHATASVLYGVAPRGWMLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVAS 878
G + A+FG+ GP GGL L W+ AG+S L F + W P A R+ S A +A + L C V A+ + L+S DQ GL L T + GG P + +G QR + G A ++Y +AP G + + I M + I P +M RLV + QG+LQGAIT+L+ +A+ I ++ +F++ + AL PG P L+ +++ ++A+
Sbjct: 151 GKVGAAFGLGFIFGPAIGGLLGGIDPRLPFWVAAGLSLCNALYGLFVLPESLPPERRSPFRWRSANPVGAVRLLGSNARLAAMALVEFCAEVAH-----------VALPAIFVLYSTYRYGWDQTTVGLA----LAFVGVCTAIVQ---GGLVGPAVKR------------LGEQRAQIIGYGGGALGFLIYALAPTGALFWIGIPVMTLWGIAGPATSGMMTRLVSPDQQGQLQGAITSLKSIAELIGPFLFTLIFAYFIGGNAPLAL----PGAPFLLAGLLLMVSALIAA 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13052.2215.1 >prot_H-elongata_contig13052.2215.1 ID=prot_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAback to top mRNA from alignment at H-elongata_contig13052:26..3947- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13052.2215.1 ID=mRNA_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3922bp|location=Sequence derived from alignment at H-elongata_contig13052:26..3947- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13052:26..3947- >mRNA_H-elongata_contig13052.2215.1 ID=mRNA_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig13052:26..3947- (Himanthalia elongata Himel1 dioecious)back to top |