mRNA_H-elongata_contig1302.2202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1302.2202.1
Unique NamemRNA_H-elongata_contig1302.2202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 2.960e-122
Identity = 289/451 (64.08%), Postives = 309/451 (68.51%), Query Frame = 1 
Query:  103 KKEEISREEQQKADVEGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHN-RGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSGY---GGGGYNQGGDRSQQSYGGYSGQQQGYXXXXXXXXXXXXGXXXXQQDQGYATSGYSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQQGYSSTGQAASXXXXXXX-------------TDTTGNGSYGASTAAASXXXXXXXXXXXXXAYRGGATTQSRQDRSYRPY 1404
            K +E+S EEQQKADVEGKIFLGGLTWQT+++MLKTHFGKWG+L+DVILMRNKITGEPRGFGFVQFQ ++SADAALKEEHVIDGRTIDVKRAVPRDRAP PRA  DR   N RGGSQ+G R GGMNDAPLTNKIFVGGLDQEVND+DFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYD+PD+VRKVM GG HELKGKSVEVKTAAPRDGPR  +GGGG XXXXXXXXXXXXXX XXXXXXXXXX        XXXXX         GGGYNQ     QQ  GGY                XXX XXX QQDQ YA+             XXXXXXXXX                            G Q GYS       XXXXXXX             TD +G+G YG +T AA+             AYRGGATTQ RQ+RSYRPY
Sbjct:   45 KAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXYXXXXXXXXXXQQGWSQQGXXXXXXXXXXQQXXGGGYNQ-----QQQQGGYG---------------XXXXXXXGQQDQSYASX------------XXXXXXXXXQGAATTPRQSSQTASTGYNQGTTAQQGYGAQTGYSXXXXXXXXXXXXXXXXXXXXYGTSYAGTDASGSGGYG-NTGAATGYGTAGVDQGGYGAYRGGATTQGRQERSYRPY 462
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A835M6Y2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M6Y2_9MAGN)

HSP 1 Score: 198 bits (503), Expect = 1.090e-52
Identity = 96/195 (49.23%), Postives = 131/195 (67.18%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRG-GSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD 729
            +GK+F+GG++++T +E L+ HF K+G + D ++MR+++T  PRGFGFV F   S  D AL+E HVI  RT++VK+AVPR    Q    ++++ H+RG G +  S  GG N    + KIFVGGL   V + +FRGYF KFG++ D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  KSVEVK A P+D
Sbjct:    7 QGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVVDQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKSSSNAGGNNTQFRSKKIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQNNFHELNNKSVEVKRAVPKD 201
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.600e-51
Identity = 106/211 (50.24%), Postives = 138/211 (65.40%), Query Frame = 1 
Query:  139 ADVEGKIFLG---GLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKE-EHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 759
            +DV GK+F+G   G++WQTS+E L  HF K+G+L+DV LM++K TG+PRGFGF++F+  S  DA L + EH IDGR +DVKRAVP+  AP P   T              RQ   N      K+FVGGL   V  ++FR YF  FG V DAVVM+D++T RSRGFGF+T+ +  VV+ V+  G HEL GK VEVKTA P++  R +S GGG
Sbjct:   11 SDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARAT--------------RQADFN------KVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLM-GTHELNGKMVEVKTAEPKESRRNASPGGG 200
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: UPI001C50233F (heterogeneous nuclear ribonucleoprotein 1-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C50233F)

HSP 1 Score: 192 bits (488), Expect = 6.630e-51
Identity = 99/195 (50.77%), Postives = 130/195 (66.67%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDG 732
            + K+F+GG++W+TSDE LK HFGK+G + + ++MR+K TG  RGFGFV F   S AD AL+++HVI GRT++VK+AVPR    Q +     Q  N+G S   S  GG ++   T KIFVGGL   + + +F+ YF KFG+V D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  K VEVK A P+DG
Sbjct:    5 QAKLFVGGISWETSDETLKDHFGKYGDVVESVIMRDKNTGSARGFGFVLFSDPSVADKALQDKHVILGRTVEVKKAVPR--GDQHQHXXXXQQQNKG-SIKNSSNGGSDNQFRTKKIFVGGLSSSLTEEEFKSYFEKFGRVTDVVVMYDSVTHRPRGFGFITFDSEEAVESVMQKNFHELNDKFVEVKRAVPKDG 196
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 187 bits (474), Expect = 9.700e-51
Identity = 93/196 (47.45%), Postives = 128/196 (65.31%), Query Frame = 1 
Query:  142 DVEGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD 729
            DV GK+FLGG++WQT+++ LK +F K+G L D  +M++K TG+PRGFGFVQF+ AS+ D  L EEH IDGR +D+K+A+ R+ AP+                       +++     KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY + + V +VM+   H L+ K VE+K A PRD
Sbjct:   11 DVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAPRA----------------------ISEKIDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMN-ETHTLRDKVVEIKRAEPRD 183
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: I1I4K8_BRADI (Uncharacterized protein n=18 Tax=Pooideae TaxID=147368 RepID=I1I4K8_BRADI)

HSP 1 Score: 194 bits (493), Expect = 1.310e-50
Identity = 99/204 (48.53%), Postives = 130/204 (63.73%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 759
            +GK+F+GG++W+T++E L  HF  +G +S   +MR+K+TG PRGFGFV +   ++ DAAL E H +DGRT+DVKRA+ R+     +A       N GG    +   G      T KIFVGGL   + D +FR YF  FG V D VVMYD+ T R RGFGFIT+D+ D V +V+H   H+L GK VEVK A PR+   P SGGGG
Sbjct:    5 QGKLFIGGISWETTEEKLHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAALLEPHTLDGRTVDVKRALSREEQQASKAVNPSTGRNTGGXXXXNDASGTR----TKKIFVGGLPSSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPREA-NPGSGGGG 203
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: S8D8L2_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8L2_9LAMI)

HSP 1 Score: 188 bits (478), Expect = 8.890e-50
Identity = 94/200 (47.00%), Postives = 131/200 (65.50%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD-GPRPS 744
            +GK+F+GG++W T+++ LK +FG +G + + ++MR++ TG  RGFGF+ F +   A+  +KE+H+IDGRT++ K+AVPRD         D  L NR     GS  G  + +  T KIFVGGL   V ++DF+ YF +FG + D VVMYD  T R RGFGFITYD+ D V +V+H   HEL GK VEVK A P++  P PS
Sbjct:   11 QGKLFIGGISWDTNEDRLKEYFGAYGEVIEAVIMRDRATGRARGFGFIVFANPLVAERVVKEKHIIDGRTVEAKKAVPRD---------DHHLMNRNTGSGGSIHGSPSQS-RTKKIFVGGLASTVTENDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHNTFHELNGKMVEVKRAVPKELSPGPS 200
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BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.040e-49
Identity = 98/201 (48.76%), Postives = 129/201 (64.18%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSG 750
            EGK+F+GG++WQT+++ L+ +F K+G L+DV +M++K TG+PRGFGFV F+  S  +  L + H +DGR +D KRAV R+ +  PR          GG   G  +          KIFVGGL   V + DFRGYF KFG + DAVVM D+ TGRSRGFGF+TYD+   VR V+ G  HE+KGK VEVK A PR    P+ G
Sbjct:    4 EGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR----------GGGYGGESK----------KIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAGS-HEIKGKFVEVKRAEPRQDRGPAGG 183
[Close]
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF)

HSP 1 Score: 189 bits (481), Expect = 1.060e-49
Identity = 95/206 (46.12%), Postives = 137/206 (66.50%), Query Frame = 1 
Query:  148 EGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQ--MGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 759
            + K+F+GG++W+T++++L  HF K+G +S  ++ +++++G+PRGF FV F  +S+ D AL+E H I GRT++VKRA+PR         + +Q ++RG S+   G+ +G   D   T KIFVGGL   + + +FR YFAKFG++ D VVM+D  T R RGFGFITYD+ D V +VM    HEL GK VEVK A P+DG   S  G G
Sbjct:    6 QNKLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRSEQQ-----SQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSNSSGNGYG 206
[Close]
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.060e-49
Identity = 96/196 (48.98%), Postives = 130/196 (66.33%), Query Frame = 1 
Query:  142 DVEGKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD 729
            DVEGK+F+GG++WQT++E L+ HFGK+G+L+D+ LM++K TG PRGFGF++F+  +  D  L +EH IDG+ +DVKRAVP+  AP P + + R                      TNKIFVGGL   V  ++FR YF  FG V DAVVM+D++T RSRGFGF+T+    VV  +M  G HE+ GK VEVK A P++
Sbjct:  145 DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAE-------------------TNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMM-GTHEINGKMVEVKRAEPKE 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI2.960e-12264.08RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A835M6Y2_9MAGN1.090e-5249.23Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A835ZAL5_9STRA2.600e-5150.24Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI001C50233F6.630e-5150.77heterogeneous nuclear ribonucleoprotein 1-like n=1... [more]
A0A7S3UWI8_HETAK9.700e-5147.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I1I4K8_BRADI1.310e-5048.53Uncharacterized protein n=18 Tax=Pooideae TaxID=14... [more]
S8D8L2_9LAMI8.890e-5047.00Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A7S2XZ50_9STRA1.040e-4948.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5A7PXB6_STRAF1.060e-4946.12RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
D7FW71_ECTSI1.060e-4948.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1302contigH-elongata_contig1302:11416..16793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.5
Seed ortholog evalue1.1e-90
Seed eggNOG ortholog2880.D7FQT7
Preferred nameHNRNPA1
KEGG rclassRC00302
KEGG koko:K12235,ko:K12741,ko:K14411
KEGG ReactionR00589
KEGG Pathwayko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
EC5.1.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding protein
Ec32 orthologEc-16_000660.1
Exons10
Model size2507
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1302.2202.1prot_H-elongata_contig1302.2202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1302 11801..15693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.1837718-UTR-H-elongata_contig1302:11415..115511622929774.1837718-UTR-H-elongata_contig1302:11415..11551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 11416..11551 +
1691679152.615069-UTR-H-elongata_contig1302:11415..115511691679152.615069-UTR-H-elongata_contig1302:11415..11551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 11416..11551 +
1622929774.1987152-UTR-H-elongata_contig1302:11741..118001622929774.1987152-UTR-H-elongata_contig1302:11741..11800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 11742..11800 +
1691679152.6272426-UTR-H-elongata_contig1302:11741..118001691679152.6272426-UTR-H-elongata_contig1302:11741..11800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 11742..11800 +
1622929774.4506536-UTR-H-elongata_contig1302:15693..167931622929774.4506536-UTR-H-elongata_contig1302:15693..16793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 15694..16793 +
1691679152.718779-UTR-H-elongata_contig1302:15693..167931691679152.718779-UTR-H-elongata_contig1302:15693..16793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1302 15694..16793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.2280555-CDS-H-elongata_contig1302:11800..119151622929774.2280555-CDS-H-elongata_contig1302:11800..11915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 11801..11915 +
1691679152.6347287-CDS-H-elongata_contig1302:11800..119151691679152.6347287-CDS-H-elongata_contig1302:11800..11915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 11801..11915 +
1622929774.242295-CDS-H-elongata_contig1302:12799..128931622929774.242295-CDS-H-elongata_contig1302:12799..12893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 12800..12893 +
1691679152.6428227-CDS-H-elongata_contig1302:12799..128931691679152.6428227-CDS-H-elongata_contig1302:12799..12893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 12800..12893 +
1622929774.2528558-CDS-H-elongata_contig1302:13209..133001622929774.2528558-CDS-H-elongata_contig1302:13209..13300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13210..13300 +
1691679152.6519063-CDS-H-elongata_contig1302:13209..133001691679152.6519063-CDS-H-elongata_contig1302:13209..13300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13210..13300 +
1622929774.2647486-CDS-H-elongata_contig1302:13726..137881622929774.2647486-CDS-H-elongata_contig1302:13726..13788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13727..13788 +
1691679152.6614802-CDS-H-elongata_contig1302:13726..137881691679152.6614802-CDS-H-elongata_contig1302:13726..13788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13727..13788 +
1622929774.2818494-CDS-H-elongata_contig1302:13929..140321622929774.2818494-CDS-H-elongata_contig1302:13929..14032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13930..14032 +
1691679152.6705585-CDS-H-elongata_contig1302:13929..140321691679152.6705585-CDS-H-elongata_contig1302:13929..14032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 13930..14032 +
1622929774.3147557-CDS-H-elongata_contig1302:14253..144571622929774.3147557-CDS-H-elongata_contig1302:14253..14457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 14254..14457 +
1691679152.6794124-CDS-H-elongata_contig1302:14253..144571691679152.6794124-CDS-H-elongata_contig1302:14253..14457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 14254..14457 +
1622929774.3322108-CDS-H-elongata_contig1302:14902..149681622929774.3322108-CDS-H-elongata_contig1302:14902..14968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 14903..14968 +
1691679152.6883545-CDS-H-elongata_contig1302:14902..149681691679152.6883545-CDS-H-elongata_contig1302:14902..14968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 14903..14968 +
1622929774.345311-CDS-H-elongata_contig1302:15088..153641622929774.345311-CDS-H-elongata_contig1302:15088..15364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 15089..15364 +
1691679152.6985536-CDS-H-elongata_contig1302:15088..153641691679152.6985536-CDS-H-elongata_contig1302:15088..15364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 15089..15364 +
1622929774.3606353-CDS-H-elongata_contig1302:15492..156931622929774.3606353-CDS-H-elongata_contig1302:15492..15693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 15493..15693 +
1691679152.7069726-CDS-H-elongata_contig1302:15492..156931691679152.7069726-CDS-H-elongata_contig1302:15492..15693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1302 15493..15693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1302.2202.1

>prot_H-elongata_contig1302.2202.1 ID=prot_H-elongata_contig1302.2202.1|Name=mRNA_H-elongata_contig1302.2202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=404bp
MLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVI
DGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNK
IFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNP
DVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGGSGYGGRGGYGGG
GGQGGGYSGGSGGYGGQQGWSQQGGYNDRSGYGGGGYNQGGDRSQQSYGG
YSGQQQGYGYNQQGGGGGGGGYGYGQQDQGYATSGYSQQGYGQGQQAAPA
ATRASSQTGSASGYSQTSTAQGYEAQTGYGQGYGQQQGYSSTGQAASGYG
TAYGTDTTGNGSYGASTAAASYGTAAVADQGGYGAYRGGATTQSRQDRSY
RPY*
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mRNA from alignment at H-elongata_contig1302:11416..16793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1302.2202.1 ID=mRNA_H-elongata_contig1302.2202.1|Name=mRNA_H-elongata_contig1302.2202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5378bp|location=Sequence derived from alignment at H-elongata_contig1302:11416..16793+ (Himanthalia elongata Himel1 dioecious)
AACGGCGTGGCTGATGAGGCCGACGCTGCACCGACTGTTGCCGCTGCCGG
TGAGGGTAATGATGAGGTGACGAATACCGCTAACGAGGCCTCCGACGACG
TTAAGAAGGAAGAAATCTCCCGCGAAGAGCAGCAAAGTGAGCGATTTGTG
CCGTTGATAACGAAAGGTAAAATCATTTTCGTCTTTTCTTGACGCACCTT
TTTCATGAGATTGCGAATTCTTGATTTTTCATAAGTTTCATACAAAATAC
AAACGCATATTTCCTGTCATATTTTTATCTTGATAGTACATATGTCCAAA
TGCTTGTGTTTTTTTGGAACGAACAGAGGCGGATGTCGAGGGCAAGATCT
TCCTCGGAGGTCTTACTTGGCAGACGTCAGATGAGATGCTCAAGACGCAT
TTCGGGAAGTGGGGCAGCCTAAGCGATGTCATACTCATGCGCAACAAAAT
TACCGGAGAGCCCCGAGGATTCGGCTTCGTTCAGTTCCAGCACGCCTCAT
GTGCGTTTGTTCGTTCGTCGTTTGTGTTTTGTCCTTTTTTTAGTGAATCG
ACTTTCTGATAGGCTGATATGTCATGATAATATACGACCGCTCGTACGAT
ACTGTCCTTTAAATATGTTAGAGATTAAATGCAAAGCCGAAATAGGAATT
TATGGCGTCTGTATTATACATGTTATGACATGACCCCAAGAGCCTTCGCT
TTCCCGAAGTGTAATGTACTCAGATATCCCCTTTCCTTCGCCGGAAATAT
GTTTTAAGATGTGCAATCGGTTATGCAATCGGTTATTTTAGCGCAGGGTA
CAATTAATACTAGCAAGGCAGTGACATCCAGAGATGATCAAATTAAAACA
TGTCCTACATTGAGAATTCACCAGGAATTCGTGCAGTTTTGAGAGAAGAA
ACGAGAGGTACAGAAAGAGAGAAGGAAAGAAGCAGCAGCAGCAGCAGAAG
GCAGCGGTGTACAGATAAAGAGAGAAGGGAAAGAAGCAGCAGCAGCAGGC
AGCCGTGTCTACGAGTTCAGATAGACCCCAGAGTCTAAATCGTTCGGCAA
GGCAGAGTTATAGAAGGGTCTTCAACGGTCGCCAGCCTGGGCCTCCCCTG
TTGTAGAAACTTATCAGGATATTGTTGCTTGTTACGGAAACACGCAGATG
CTCTCGTACGTTTGAAGGTTCCAATCCGTTTTGTGTAATGTCCCGTACCG
TACCGTACCGAATTAATATATCGTTCCGTACCGTGTCCCGTTTCGATCGC
GTTGCATACCTTTTTTTGTTTTGTACTGTTTTATTAATGTATTATTTGTT
ATTTTTCTTTGCTATGCCTCTTTGCGCTGCTTGTTTGTCTTTGCTACCCG
TCGTCGTGGATCGTGTCTACCCTTAATTTTATAGCCGCGGATGCTGCTCT
GAAGGAAGAGCACGTGATAGATGGCAGGACCATAGACGTGAAGAGGGCTG
TACCTAGGGACAGAGCACCGCAGCCTAGGTTGGTTAGCGTCGCGTTATGT
CTCAGGGTTTTAGTTGGCGGGGTTTTGCTTTATGAAAATGGAAATTGGCT
GTTTAATGCAGAGAAGACGATTTCCGATAACATCTTTGCCCCTTTACCAA
AATTCACATATTTTTCCTACTCAGTAAGCTGAAAAGGGAAATTAAATTGC
CTAAAATTGGCTTCTCCCTTTCCCTTCTCTGCCCCCAAAACATGTTTTCC
GTTGTTTCTGGCGGTGGTTAACCTTGGACTACCTACAAACGGCGATGTTG
CCGCCTGGACGAATGACTATGACTGGCCGATGCCGTTTTCTCAGGGCCAC
GACTGATCGACAGTTGCACAACAGAGGCGGTTCTCAGATGGGCTCCCGCC
AAGGCGGTATGAACGATGCCCCCCTTACCAACAAGGTGAGACTTGATGCT
AATAACTTTGATGTTGCAACATGTTCACTGTACCAATAGTGGGCGTGGGA
AAGAGAAACGCACAATAATTTGTCCATCGGGTTACCTGAATAGGCTGCAC
CCGTTTTTTTTAAGCTACCTTGAAGAGTGCTGGCTCAGTACCGGCAGACT
CTCGGTGGTAGACGCTGTGGGTACGCAATTACGGTGGTTTCACGGTGAAA
AATCGCATAATATTTGGTCTGGGTTGAGATAAGGAGCCAGCTGACGCGGT
ACGGGACGGTCGAACCCGTCTTGCGAGACTAAATTGTAAGGCGCAAACTT
AATCCTGCGGAAATAATTTAAGAACGCCACACTTACTATTATTATATCAC
CTAAAATTGCTATTGTTTAATGGTTTTTTCCTCCGGAAAAAATATCGCTC
TGCTTTAATAGATTTTTGTCGGTGGCCTGGACCAGGAGGTCAATGACAGT
GACTTCAGGGGCTACTTCGCAAAGTGAGTTGCCCTAAAAACTTGTACGTT
TGTCATGAAACAAATTACAGCCGTTCGAGTCCATGTGCATACTCTTGATT
AATTATAATGGAAGAGATTAACCTTGCGCTTTTCTTGTAATCTGTGACAT
TGTGTTTTGTTCAGGTTCGGTAAGGTTGAAGATGCAGTTGTCATGTACGA
CAAAAAGACTGGCAGATCGAGGGGATTCGGATTTATCACCTACGACAATC
CTGATGTTGTACGCAAGGTGAGATTATTTTACTTGGTCTTATGCTAATTG
TGTCAGCCAATAATTTATTTTCTGGCTTTACCGCCTGTAGATTCGCATAG
TTTACGCCGAAACACATTTGAGTTGTTGGGGTAACCTTTACGGCAACAAA
AACAACAATCCTCGGTGAAAGGGGACCTAAGGTTGTATGCTATTTGTTCA
TTTCATATTCCCTTTCTTTCTGACCTTGCTGCGCGCAGGTAATGCATGGC
GGCGTGCATGAGTTAAAGGGTAAGTCGGTAGAGGTCAAAACTGCTGCTCC
TCGTGATGGACCCCGACCTTCCAGCGGTGGAGGAGGTAGTGGCTACGGTG
GCCGAGGCGGGTACGGGGGTGGCGGTGGTCAAGGCGGTGGATACAGCGGG
GGAAGTGGAGGCTATGGCGGACAACAGGGATGGTCACAACAGGTTTGAAA
TCCATGTTAAAAGATAAACCCTGTCTTCGAAAATAAATAGAAGTAATTGC
CTTATGTTTTTCAGACCATTTTATCAAGGTAAGAAATAGTTGTGTTATTA
AAATATGTTTCTAATAGTTTGTCTTAAAACATATTAAGGTATCACCACTT
CGCTTGTATCACATGATACATGCATTTGTTTTCGCAAATACAGCTTTCTG
GCAAATGTTCCCAGACTTCCCTACGCTTGAACTCTCAAAACCGCTCCATC
GGTGTCCAAATAAAATATGAAATATGTAACAGATCCTTTTGAAATTTTAA
ATCCAGTACGAAAATTGAAATCCAGTTCCTGCTTTTTTCAGCTCGATTTC
GCGCTTTTGTCTCTCAATATCATCCTATGATTTTCTTTCTAAATACTTAA
GCTCACACTTTTGTACGTTTCTGATGTATAAATACAGGGTGGATACAATG
ACCGAAGCGGGTACGGTGGTGGAGGTTACAACCAAGGAGGCGACCGTTCT
CAGGTATGCCAAGATAACTTCTAGTTTGCTATATTGTTGACTAAACCGTC
TCGGGTACTTCTGCGGAATGCAAACTCGATGTTAACCAGCTTGAACCGCT
ACAATGATGCAAATATTTCGCAGCAAAGCTACGGCGGCTACAGCGGACAG
CAGCAAGGCTATGGCTACAATCAACAGGGTGGCGGGGGAGGTGGGGGTGG
TTATGGCTATGGACAGCAAGACCAAGGGTACGCCACCAGCGGTTACAGTC
AACAAGGGTACGGGCAGGGTCAGCAGGCAGCGCCAGCTGCAACCCGCGCG
TCATCGCAGACAGGTTCCGCCAGCGGTTATTCTCAGACTAGCACTGCACA
GGGATACGAAGCGCAGACTGGTTACGGCCAAGGATACGGCCAGCAACAGG
TAACACTTTTTGCTGGTACTCAAGTGATGCATGTTTTATTGCTTTTTGTC
AACATTTTGCAATAATTTTAATTTTGTCAAAACGTGTAATTTTTTATCCA
ATTATATTTCCTTCTAAATCTTGGCAGGGATACAGTTCTACTGGACAGGC
AGCAAGTGGCTATGGTACAGCTTACGGTACGGACACGACCGGAAACGGAA
GCTACGGTGCTTCGACAGCTGCTGCGAGCTACGGTACAGCTGCTGTAGCG
GACCAGGGTGGATACGGCGCTTACCGTGGCGGTGCAACTACACAAAGTCG
CCAGGACAGGAGCTACAGGCCCTACTAAAGTTGCTGCGTTTTTTGCAGAC
GTAAATCAATAATCTGCTTGGTGCATTGCTCAATTTGCAACGATTTTGTG
TGGAGATAGCCAACATTTGGGTTGTAAGGGAGTTGTCCATTTTCCTTTAA
GGCCTTGGGACTGCGACGTTTTCCGCTAGAGCAGTAAGGAGAGTTCGAAC
ATAGCTGGTAAGAGACTATTCCCAAGCCACCTTCGGATGCCCGAACTTCT
CCGTAAGTAGAATATCGCCCCAAGTAGGGAAGAGTTGGTTATCGAAGGAT
TACGCTAGATATCTTCTTCTTCGTGGTGGTGCGATTGCTCTTTGGCCTGA
GCTATTTGACCCATTGAACTCTTCAAACAACCTGTGAAGCTGTGGTAGGT
TGCATTCATGAGCTTGAGGTTGTTTTGAGGCGAACGGCCTTTTCCTAGGG
CGCCTATTTTCAGATTAAGCCCTTTGTTAAAATAATTCGTTCTCAGCCCT
CTTTGGTTTTGTATGAAAACCTTCCCTATATATGTATATATATTTCGAGC
AATGAAATGTATTTTGTATTTTGCTTTTGTCACTAAAAATAGCGATAATA
GTGTGAGGTCGTTTCCTTCCCGATGGTATTTTTTTATCCTGTGACAAATC
ACCTGGATTCTTACATGGCTTATGTGATCATTAAAATATAACGCATATCT
GCTACTTTTACCAAGGTTTCTCTTCTACTTTTTCGTCCGGCAAATTTGTT
TCCTTTCCTGTCCTGTACCATATCCCGAACGATTTTATGTATTCCCACAT
CCGTATCCCGTTATGTTCCGCACGATTGTCGAGGTCTCGTACGCCATACG
TTTATATTGTAGGTTCCGTGTGATCACCGGCTAGATTCTGTCCTCAGCCT
GCTTATTGCGGATAAGGATATATGGCGGGTCCGTTTTGGCGCCAAATTCT
GAATTGCAAATGATCTATCTGAGAGCAAGAAAAACCCTCCTCATTCCTTA
GCATGCCGTTATGTTTAATTAAGATCTTTTTGCAGTGTAGAATATTTCTT
TTTCTGGCGCAGAGAAAAAAAGTGTTGAGAGCGTATAGACGCAACCACGA
GACTACAGGATTGATATTTAACAAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig1302:11416..16793+

>mRNA_H-elongata_contig1302.2202.1 ID=mRNA_H-elongata_contig1302.2202.1|Name=mRNA_H-elongata_contig1302.2202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2424bp|location=Sequence derived from alignment at H-elongata_contig1302:11416..16793+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAAGACGCATTTCGGGAAGTGGGGCAGCCTAAGCGATGTCATACT
CATGCGCAACAAAATTACCGGAGAGCCCCGAGGATTCGGCTTCGTTCAGT
TCCAGCACGCCTCATATGCTCAAGACGCATTTCGGGAAGTGGGGCAGCCT
AAGCGATGTCATACTCATGCGCAACAAAATTACCGGAGAGCCCCGAGGAT
TCGGCTTCGTTCAGTTCCAGCACGCCTCATCCGCGGATGCTGCTCTGAAG
GAAGAGCACGTGATAGATGGCAGGACCATAGACGTGAAGAGGGCTGTACC
TAGGGACAGAGCACCGCAGCCTAGCCGCGGATGCTGCTCTGAAGGAAGAG
CACGTGATAGATGGCAGGACCATAGACGTGAAGAGGGCTGTACCTAGGGA
CAGAGCACCGCAGCCTAGGGCCACGACTGATCGACAGTTGCACAACAGAG
GCGGTTCTCAGATGGGCTCCCGCCAAGGCGGTATGAACGATGCCCCCCTT
ACCAACAAGGGCCACGACTGATCGACAGTTGCACAACAGAGGCGGTTCTC
AGATGGGCTCCCGCCAAGGCGGTATGAACGATGCCCCCCTTACCAACAAG
ATTTTTGTCGGTGGCCTGGACCAGGAGGTCAATGACAGTGACTTCAGGGG
CTACTTCGCAAAATTTTTGTCGGTGGCCTGGACCAGGAGGTCAATGACAG
TGACTTCAGGGGCTACTTCGCAAAGTTCGGTAAGGTTGAAGATGCAGTTG
TCATGTACGACAAAAAGACTGGCAGATCGAGGGGATTCGGATTTATCACC
TACGACAATCCTGATGTTGTACGCAAGGTTCGGTAAGGTTGAAGATGCAG
TTGTCATGTACGACAAAAAGACTGGCAGATCGAGGGGATTCGGATTTATC
ACCTACGACAATCCTGATGTTGTACGCAAGGTAATGCATGGCGGCGTGCA
TGAGTTAAAGGGTAAGTCGGTAGAGGTCAAAACTGCTGCTCCTCGTGATG
GACCCCGACCTTCCAGCGGTGGAGGAGGTAGTGGCTACGGTGGCCGAGGC
GGGTACGGGGGTGGCGGTGGTCAAGGCGGTGGATACAGCGGGGGAAGTGG
AGGCTATGGCGGACAACAGGGATGGTCACAACAGGTAATGCATGGCGGCG
TGCATGAGTTAAAGGGTAAGTCGGTAGAGGTCAAAACTGCTGCTCCTCGT
GATGGACCCCGACCTTCCAGCGGTGGAGGAGGTAGTGGCTACGGTGGCCG
AGGCGGGTACGGGGGTGGCGGTGGTCAAGGCGGTGGATACAGCGGGGGAA
GTGGAGGCTATGGCGGACAACAGGGATGGTCACAACAGGGTGGATACAAT
GACCGAAGCGGGTACGGTGGTGGAGGTTACAACCAAGGAGGCGACCGTTC
TCAGGGTGGATACAATGACCGAAGCGGGTACGGTGGTGGAGGTTACAACC
AAGGAGGCGACCGTTCTCAGCAAAGCTACGGCGGCTACAGCGGACAGCAG
CAAGGCTATGGCTACAATCAACAGGGTGGCGGGGGAGGTGGGGGTGGTTA
TGGCTATGGACAGCAAGACCAAGGGTACGCCACCAGCGGTTACAGTCAAC
AAGGGTACGGGCAGGGTCAGCAGGCAGCGCCAGCTGCAACCCGCGCGTCA
TCGCAGACAGGTTCCGCCAGCGGTTATTCTCAGACTAGCACTGCACAGGG
ATACGAAGCGCAGACTGGTTACGGCCAAGGATACGGCCAGCAACAGCAAA
GCTACGGCGGCTACAGCGGACAGCAGCAAGGCTATGGCTACAATCAACAG
GGTGGCGGGGGAGGTGGGGGTGGTTATGGCTATGGACAGCAAGACCAAGG
GTACGCCACCAGCGGTTACAGTCAACAAGGGTACGGGCAGGGTCAGCAGG
CAGCGCCAGCTGCAACCCGCGCGTCATCGCAGACAGGTTCCGCCAGCGGT
TATTCTCAGACTAGCACTGCACAGGGATACGAAGCGCAGACTGGTTACGG
CCAAGGATACGGCCAGCAACAGGGATACAGTTCTACTGGACAGGCAGCAA
GTGGCTATGGTACAGCTTACGGTACGGACACGACCGGAAACGGAAGCTAC
GGTGCTTCGACAGCTGCTGCGAGCTACGGTACAGCTGCTGTAGCGGACCA
GGGTGGATACGGCGCTTACCGTGGCGGTGCAACTACACAAAGTCGCCAGG
ACAGGAGCTACAGGCCCTACTAAGGATACAGTTCTACTGGACAGGCAGCA
AGTGGCTATGGTACAGCTTACGGTACGGACACGACCGGAAACGGAAGCTA
CGGTGCTTCGACAGCTGCTGCGAGCTACGGTACAGCTGCTGTAGCGGACC
AGGGTGGATACGGCGCTTACCGTGGCGGTGCAACTACACAAAGTCGCCAG
GACAGGAGCTACAGGCCCTACTAA
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