mRNA_H-elongata_contig128815.2121.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.740e-18 Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
IR+RW ++F LLN KS +D ++ + P L P+ E+ A++ M KAVGLD LPA L+KL L D+ +LR H W+ G PQQWKDA I VL
Sbjct: 74 IRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKLFLDGDQGLLRAFHATVVDAWQTGDAPQQWKDATIKVL 181
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A6H5JL41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL41_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 6.590e-17 Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASA---LGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRE-LHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW +FF LLN KS L+PDI ++ Q P A LG P EE+ A + ++ KA G DSLPA LLK++ + +I+ E L + W G+IPQ+WKD I VL
Sbjct: 39 ILQRWARFFGTLLNTKSPTLNPDIIEQVMQRPATCAIRRLGAVPDPEEVERATKGLQNWKAPGNDSLPAELLKIDDDDEESIVMEDLRAIFVKTWNGGEIPQEWKDTTIKVL 150
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A6H5JCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG6_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.180e-16 Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW +FF L N KS L+PDI R+ Q P LG P EE+ A + ++ KA+G DSLPA LLK++ + +L LH + +W G IP++WKDA I VL
Sbjct: 265 ILQRWARFFSTLFNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKALGHDSLPAELLKID-DDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVL 374
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A6H5KDR6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.310e-14 Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW ++F LL+ KS +D ++ + P L P+ E+ AM+ M KAVG D LPA +KL L D+ +LRE+ +W+ G PQQWKDA I VL
Sbjct: 74 IHQRWARWFHKLLSTKSPTIDLHAADKIKRWPTCVPLDDIPSLLEVEKAMREMANRKAVGPDDLPAERIKLFLDGDQGLLREVSATVVDVWQTGDKPQQWKDATIEVL 181
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A2B4S1X4_STYPI (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S1X4_STYPI) HSP 1 Score: 65.5 bits (158), Expect = 3.170e-10 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 7 ERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
ERWV+ + L + K +D + +PQ P + L I PTEEE+ A++ + + KA G D++PA ++K + +L LH+L W E +IPQ +DA IT+L
Sbjct: 41 ERWVERYSNLYS-KERHVDGQLREIIPQLPEMTELDIPPTEEELAIAIEELASRKAPGNDNIPAEVVK---ENKAFLLPYLHKLLMTCWLEAEIPQDMRDAKITIL 142
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A7M3RRA7_SPIER (Hypothetical protein n=2 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RRA7_SPIER) HSP 1 Score: 63.9 bits (154), Expect = 1.300e-9 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW + FR +LN S + D I RLPQ + L ++P+ +E N A+Q + + KA G D++PA + K ++ L L +WR+G++PQ +KDA I L
Sbjct: 195 ILQRWAEHFRGVLNRPSVISDAAI-ERLPQVETNADLDLQPSLQETNRAVQQLSSGKAPGSDAIPAEVYK---HGGPQLMDHLTALFQEMWRQGEVPQDFKDATIVHL 298
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A7M3QSN1_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QSN1_SPIER) HSP 1 Score: 61.2 bits (147), Expect = 2.490e-9 Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW + FR +LN S + D I RLPQ L + P+ +E A+Q + + KA G D++PA + K + ++ +L L +WR+G++PQ +KDA I L
Sbjct: 26 ILQRWAEHFRGVLNRPSVISDAAI-ARLPQVETNVDLNLPPSLQETIRAVQQLSSGKAPGSDAIPAEVYK---HEGPELMDQLTALFQEMWRQGEVPQDFKDATIVHL 129
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A7M3PV79_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PV79_SPIER) HSP 1 Score: 63.2 bits (152), Expect = 2.530e-9 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW + FR +LN+ S + D I RLPQ + L + P+ +E A+Q + + KA G D++PA + K ++ L L V+WR+G++PQ +KDA I L
Sbjct: 535 ILQRWAEHFRGVLNSPSAISDAAI-ARLPQVETNADLDLPPSLQETIRAVQQLSSGKAPGSDAIPAEVYK---HGGPQLMDHLTALFQVMWRQGEVPQDFKDATIVHL 638
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A654HFV3_9CEST (Reverse transcriptase domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HFV3_9CEST) HSP 1 Score: 62.8 bits (151), Expect = 3.300e-9 Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW + FR +LN S + D I RLPQ LG+ P+ +E+ A+Q + KA G D++PA + K ++ L L +WR+G++PQ +KDA I L
Sbjct: 230 ILQRWAEHFRGVLNRPSTISDAAI-ARLPQVETNVDLGLPPSLQEVIRAVQQLSRGKAPGSDAIPAEVYK---HGGPQLMDHLTALFQEMWRQGEVPQDFKDATIVHL 333
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Match: A0A7M3QAT3_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QAT3_SPIER) HSP 1 Score: 62.4 bits (150), Expect = 4.170e-9 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 1 IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMQAMETAKAVGLDSLPAVLLKLELQQDRTILRELHRLTTVIWREGKIPQQWKDAVITVL 324
I +RW + FR +LN S + D I RLPQ + L + P+ +E A+Q + + KA+G D++PA + K ++ L L +WR+GK+PQ +KDA I L
Sbjct: 58 ILQRWAEHFRGVLNRPSVISDAAI-ARLPQVATNADLDLPPSLQETIRAVQQLSSGKALGSDAIPAEVYK---HGGPLLMDHLTALFQEMWRQGKVPQDFKDATIVHL 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128815.2121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig128815.2121.1 >prot_H-elongata_contig128815.2121.1 ID=prot_H-elongata_contig128815.2121.1|Name=mRNA_H-elongata_contig128815.2121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp IRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPTEEEINTAMback to top mRNA from alignment at H-elongata_contig128815:477..800- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig128815.2121.1 ID=mRNA_H-elongata_contig128815.2121.1|Name=mRNA_H-elongata_contig128815.2121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig128815:477..800- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig128815:477..800- >mRNA_H-elongata_contig128815.2121.1 ID=mRNA_H-elongata_contig128815.2121.1|Name=mRNA_H-elongata_contig128815.2121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig128815:477..800- (Himanthalia elongata Himel1 dioecious)back to top |