mRNA_H-elongata_contig12881.2120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12881.2120.1
Unique NamemRNA_H-elongata_contig12881.2120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A6H5L498_9PHAE (Inhibitor of growth protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L498_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.470e-88
Identity = 137/197 (69.54%), Postives = 152/197 (77.16%), Query Frame = 1
Query:    7 TARTQRSRSSKGTKNIRSRQQEALANGPVPDGWRTPEVRALEDEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPREVPEMTP-RKRRRTGTEKQRDDEPVSDWL--NLANRDDLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQS 588
            T R ++SR+ KG    ++R Q     GPVPDGWRTPE+RALED+INSRIDLVLRM+DEKWRLAQHAYD LD+NIR             RRQGLLPPREV    P RKRRR+G EK   DEP SDWL  +L+ RDDLPVDPNEP YCLC QVSYG+MVGCDN SCDNGEWFHFGCV +TK+P GRWLCPGCTAQRRQS
Sbjct:   78 TGRAKKSRTKKGAP--KTRPQARATKGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKT--DEPESDWLGLSLSERDDLPVDPNEPVYCLCMQVSYGKMVGCDNPSCDNGEWFHFGCVNLTKRPPGRWLCPGCTAQRRQS 270          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: D8LSA3_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 6.120e-38
Identity = 77/125 (61.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   19 QRSRSSKGTKNIRSRQQEALANGPVPDGWRTPEVRALEDEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPREVPEMTP-RKRRRTGTEKQRDDEPVSDWLNLA 390
            ++SR+ KG    ++R Q     GPVPDGWRTPE+RALED+INSRIDLVLRM+DEKWRLAQHAYD LD+NIR             RRQGL+PPREV    P RKRRR+G EK   DEP SDWL L+
Sbjct:   24 EKSRTKKGAP--KTRPQARATEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLIPPREVSATPPSRKRRRSGAEKT--DEPDSDWLGLS 144          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A0L8HFQ6_OCTBM (Inhibitor of growth protein n=5 Tax=Coleoidea TaxID=6606 RepID=A0A0L8HFQ6_OCTBM)

HSP 1 Score: 130 bits (327), Expect = 6.040e-34
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  133 DEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPREVPEMTPR-KRRRTGTEKQRDDE-------------------------PVSDWLNLANRDDLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQ 585
            D IN R +  L   D+K +LA   Y+ +D +IR+LD+DL R E DL+ + +  P+E P +  + K++R   + + +DE                         P+S   + ++  D+PVDPNEP YCLC+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP C  +R++
Sbjct:   66 DSINLRYNKSLGFGDDKVQLAMQTYEMVDKHIRKLDADLARFEADLKEKSITKPKEGPTIKVKDKKKRKSLKTEYEDEIPKKKKNKKSSLQIQPDMENSLPSLPLS-ITHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPI-EWFHFACVGLTTKPKGKWYCPRCQEERKK 240          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: UPI00109BA221 (inhibitor of growth protein 5 isoform X2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA221)

HSP 1 Score: 130 bits (326), Expect = 7.680e-34
Identity = 75/188 (39.89%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   91 VPDGWRTPEVRALEDEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQ-----GLLPPREVPEMTPRKRRRTGTEKQRDDEPVSDWLN------------------LANRDDLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQ 585
            +  G RT  ++ +E   +   + V    D+K +LA   Y+ +D +IR+LDSDL R E DL+ Q     G+    E  E+TP KR R  T K++D EP                        +    D+PVDPNEP YC+C+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP C  +R++
Sbjct:   56 MDSGERTDHLKKIEVAFSKSKEYV----DDKVQLAMQTYEMVDKHIRKLDSDLARFECDLKEQKAKESGISEYEE--EVTPPKRGRGRTSKKKDSEPXXXXXRDSSPVKTLGVTATLFSPEVVQVLDMPVDPNEPTYCICHQVSYGEMIGCDNIECPI-EWFHFPCVGLTAKPKGKWYCPKCAQERKK 236          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A6F9DFP4_9ASCI (Inhibitor of growth protein n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DFP4_9ASCI)

HSP 1 Score: 129 bits (325), Expect = 1.140e-33
Identity = 71/163 (43.56%), Postives = 93/163 (57.06%), Query Frame = 1
Query:  172 SDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPREVP----EMTPRKRRRTGTEKQRDDE------------------PVSDWLNLANRDDLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQSRR 594
            SD+K +LA   Y+ +D +IRRLDSDL R E DL+ + +           E T +KRR+ G     DDE                  P++     ++  D+PVDPNEP YCLC+QVSYGEM+GCDNQ C   EWFHFGCV +T KP G+W CP C   R + ++
Sbjct:   79 SDDKVQLAMQTYEMVDKHIRRLDSDLARFEADLKEKSVQDATGTSKVDIESTDKKRRKKGRITS-DDEGKNARKRQKTAVDVHLATPLAAAYQQSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNQDCPI-EWFHFGCVGLTSKPKGKWFCPKCREDRDRKKK 239          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: S7MF70_MYOBR (Inhibitor of growth protein n=1 Tax=Myotis brandtii TaxID=109478 RepID=S7MF70_MYOBR)

HSP 1 Score: 127 bits (318), Expect = 4.520e-33
Identity = 75/180 (41.67%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  109 TPEVRALE-DEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDL----------------RRQGLLPPREVPEMTPRKRRRTGTEKQRDDEPVSDWLNLANRD--DLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQSR 591
            +PE R     +I S        SD+K +LA   Y+ +D +IRRLD+DL R E DL                R +G    R   E TP+K++  G       E     L++   D  D+PVDPNEP YCLC+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP C  +RR+ +
Sbjct:   30 SPEQRVEHLQKIQSAYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDKLEEGRSQKEKRSSRGRGR---RTSEEDTPKKKKHKGGS-----EFTDTILSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPI-EWFHFACVDLTTKPKGKWFCPRCVQERRKKK 200          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A8C4XFU3_ERPCA (Inhibitor of growth protein n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XFU3_ERPCA)

HSP 1 Score: 128 bits (321), Expect = 4.740e-33
Identity = 70/161 (43.48%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  172 SDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPREVPE-------------MTPRKRRRTGTE----KQRDDEPVSDW------LNLANRDDLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQ 585
            SD+K +LA   Y+ +D +IRRLD+DL R E DL+ +  +   E PE              TP+ R R G++    K++  +  SD+      ++ ++  D+PVDPNEP YCLC+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP CT +R++
Sbjct:   81 SDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKEKLEVSGYESPEGRGMKKGRGQKDKKTPKGRGRKGSDEESPKKKKLKTGSDYSDSILAVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNNDCPI-EWFHFACVDLTTKPKGKWYCPRCTQERKK 240          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A6P8HS57_ACTTE (Inhibitor of growth protein n=4 Tax=Actiniaria TaxID=6103 RepID=A0A6P8HS57_ACTTE)

HSP 1 Score: 127 bits (318), Expect = 1.360e-32
Identity = 76/192 (39.58%), Postives = 102/192 (53.12%), Query Frame = 1
Query:   91 VPDGWRTPEVRALEDEINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQ-----GLLPPREVPEMTPRKRRRTGTEKQRDDEPVSDWLNLANRD----------------------DLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQ 585
            +  G RT  ++ +E   +   + V    D+K +LA   Y+ +D +IR+LDSDL R E DL+ Q     GL    E  E+TP K+ R    K++ DEP         RD                      D+PVDPNEP YC+C+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP C  +R++
Sbjct:   60 MDSGQRTDHLKKIEIAFSKSKEYV----DDKVQLAMQTYEMVDKHIRKLDSDLARFEMDLKEQKAKEAGLSDYEE--EITPPKKGRGRMSKRKADEPAK---KKKKRDTSPAKSLGVTATLFSPEVVQVLDMPVDPNEPTYCICHQVSYGEMIGCDNIECPI-EWFHFPCVGLTAKPKGKWYCPKCAQERKK 241          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: A0A6J0Z416_ODOVR (Inhibitor of growth protein n=1 Tax=Odocoileus virginianus texanus TaxID=9880 RepID=A0A6J0Z416_ODOVR)

HSP 1 Score: 123 bits (309), Expect = 1.500e-31
Identity = 73/177 (41.24%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  136 EINSRIDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQ------------GLLPPREVPEMTPRKRRRTGTEKQRDDEP-----------VSDWLNLANRD--DLPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQSR 591
            +I S  +     SD+K +LA   Y+ +D +IRRLD+DL R E DL+ +            GL   R   E   R  R  G     DD P               L++   D  D+PVDPNEP YCLC+QVSYGEM+GCDN  C   EWFHF CV +T KP G+W CP C  +RR+ +
Sbjct:   42 KIQSAYNKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDKLEGSDFESSGGRGLKKGRGQKEK--RGSRGRGRRTSEDDTPKKKKHKGGSEFTDTILSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPI-EWFHFACVDLTTKPKGKWFCPRCVQERRKKK 215          
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Match: UPI00193ADF99 (inhibitor of growth protein 5-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193ADF99)

HSP 1 Score: 124 bits (311), Expect = 1.740e-31
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  172 SDEKWRLAQHAYDSLDINIRRLDSDLGRMETDL---------------------------RRQGLLPPREVPEMTPRKRRRTGTEKQRDDEPVSDWLNLANRDD---LPVDPNEPKYCLCNQVSYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQSRR 594
            +D+K +LA   Y+ +D +IR+LDSDL R E DL                           R++G     E      +K+ ++G ++     P+   ++  +  D   +PVDPNEP YCLC+QVSYGEM+GCDN  C   EWFHFGCV +T KP G+W CP C  +R + +R
Sbjct:   79 ADDKVQLAMQTYEMVDKHIRKLDSDLARFEADLKEKSIHDSNVAGTSKADTDSGPSDKKRRKKGRAANSEDXXXXXKKKHKSGLDQSLSSVPLVSGISAYSSSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPI-EWFHFGCVNLTSKPKGKWFCPKCREERDKKKR 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12881.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L498_9PHAE1.470e-8869.54Inhibitor of growth protein n=1 Tax=Ectocarpus sp.... [more]
D8LSA3_ECTSI6.120e-3861.60PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
A0A0L8HFQ6_OCTBM6.040e-3439.55Inhibitor of growth protein n=5 Tax=Coleoidea TaxI... [more]
UPI00109BA2217.680e-3439.89inhibitor of growth protein 5 isoform X2 n=1 Tax=E... [more]
A0A6F9DFP4_9ASCI1.140e-3343.56Inhibitor of growth protein n=1 Tax=Phallusia mamm... [more]
S7MF70_MYOBR4.520e-3341.67Inhibitor of growth protein n=1 Tax=Myotis brandti... [more]
A0A8C4XFU3_ERPCA4.740e-3343.48Inhibitor of growth protein n=2 Tax=Polypteridae T... [more]
A0A6P8HS57_ACTTE1.360e-3239.58Inhibitor of growth protein n=4 Tax=Actiniaria Tax... [more]
A0A6J0Z416_ODOVR1.500e-3141.24Inhibitor of growth protein n=1 Tax=Odocoileus vir... [more]
UPI00193ADF991.740e-3138.01inhibitor of growth protein 5-like n=1 Tax=Styela ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12881contigH-elongata_contig12881:4584..7000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score129.4
Seed ortholog evalue2e-27
Seed eggNOG ortholog27923.ML01912a-PA
Preferred nameING4
KEGG koko:K11345,ko:K11346
GOsGO:0000123,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035064,GO:0035556,GO:0036211,GO:0040008,GO:0042127,GO:0042393,GO:0042770,GO:0042772,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043983,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0045786,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0072331,GO:0080090,GO:0090304,GO:0140030,GO:0140034,GO:0140110,GO:1901360,GO:1901564,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235
EggNOG free text desc.inhibitor of growth
EggNOG OGs38MUR@33154,3BFWJ@33208,COG5034@1,KOG1973@2759
COG Functional cat.B
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInhibitor of growth protein, N-terminal
Ec32 orthologEc-12_004260.1
Exons6
Model size639
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12881.2120.1prot_H-elongata_contig12881.2120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12881 4584..7000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.1331403-CDS-H-elongata_contig12881:4583..47261622929766.1331403-CDS-H-elongata_contig12881:4583..4726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 4584..4726 -
1691679149.3904724-CDS-H-elongata_contig12881:4583..47261691679149.3904724-CDS-H-elongata_contig12881:4583..4726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 4584..4726 -
1622929766.1492426-CDS-H-elongata_contig12881:5253..53021622929766.1492426-CDS-H-elongata_contig12881:5253..5302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 5254..5302 -
1691679149.40261-CDS-H-elongata_contig12881:5253..53021691679149.40261-CDS-H-elongata_contig12881:5253..5302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 5254..5302 -
1622929766.1608658-CDS-H-elongata_contig12881:5618..56691622929766.1608658-CDS-H-elongata_contig12881:5618..5669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 5619..5669 -
1691679149.414713-CDS-H-elongata_contig12881:5618..56691691679149.414713-CDS-H-elongata_contig12881:5618..5669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 5619..5669 -
1622929766.1771472-CDS-H-elongata_contig12881:6004..61391622929766.1771472-CDS-H-elongata_contig12881:6004..6139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6005..6139 -
1691679149.4240084-CDS-H-elongata_contig12881:6004..61391691679149.4240084-CDS-H-elongata_contig12881:6004..6139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6005..6139 -
1622929766.1977365-CDS-H-elongata_contig12881:6369..64981622929766.1977365-CDS-H-elongata_contig12881:6369..6498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6370..6498 -
1691679149.432888-CDS-H-elongata_contig12881:6369..64981691679149.432888-CDS-H-elongata_contig12881:6369..6498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6370..6498 -
1622929766.2145526-CDS-H-elongata_contig12881:6868..70001622929766.2145526-CDS-H-elongata_contig12881:6868..7000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6869..7000 -
1691679149.4420137-CDS-H-elongata_contig12881:6868..70001691679149.4420137-CDS-H-elongata_contig12881:6868..7000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12881 6869..7000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12881.2120.1

>prot_H-elongata_contig12881.2120.1 ID=prot_H-elongata_contig12881.2120.1|Name=mRNA_H-elongata_contig12881.2120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
MATARTQRSRSSKGTKNIRSRQQEALANGPVPDGWRTPEVRALEDEINSR
IDLVLRMSDEKWRLAQHAYDSLDINIRRLDSDLGRMETDLRRQGLLPPRE
VPEMTPRKRRRTGTEKQRDDEPVSDWLNLANRDDLPVDPNEPKYCLCNQV
SYGEMVGCDNQSCDNGEWFHFGCVKITKKPVGRWLCPGCTAQRRQSRRAG
GASSKSDFVSPF*
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mRNA from alignment at H-elongata_contig12881:4584..7000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12881.2120.1 ID=mRNA_H-elongata_contig12881.2120.1|Name=mRNA_H-elongata_contig12881.2120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2417bp|location=Sequence derived from alignment at H-elongata_contig12881:4584..7000- (Himanthalia elongata Himel1 dioecious)
ATGGCGACCGCGCGCACGCAGAGGAGCCGGTCCAGTAAGGGGACGAAAAA TATCCGATCGCGACAGCAGGAAGCTCTTGCGAATGGTCCAGTGCCTGATG GCTGGCGTACCCCGGAGGTCAGAGCTCTCGAGGTGCGTTTAGGTCTCTTA GGCACGTGTGATGGCGCAATTATCGCGGTATTATACATCGGCGGCATGCA GAGGGCGATTTACATGCGCGCGAAATCGTCCAACACGCTTCGCGTTGAAG CAAGACTGCCGGCGCGAGAGCAGCGTGTGGTGTCACACGCTTGCTTGTGT TAGGACACGCAAAGATCGAACCCTCTCACCCTTTATTCAAGAGGGAGGCC TCTTTTTTGGATCGTGACGTGTTATTTCAAGGGTGTGGGGGCGGGGTCTT AAGAGGGGTTTATTATGTTCCCCCGACCAACTCGTTCAACGTTTCACTCA TCATAACACCTCTGATACTCGGGTGACAAACCTCCACACCTCTGATTCGC AGGATGAGATCAACAGCCGGATCGACCTCGTGTTGCGCATGTCGGACGAG AAGTGGCGTCTGGCGCAGCATGCGTATGACAGTCTGGACATCAACATCCG ACGCCTCGACTCCGACCTGGGGCGTATGGAGGTGCGCATAGCGGCCGCCA CAGCACCATTCTGCCTCCCAAGCGTATTAAAAAAATACCGCACTCCCATA TTCCGTCGAGGTTCTGCATTATACCGTTCGCAAAAACGACAGACACCGGT GAAGCAGTTGCGGAATCAATCACCACCGCCTAGACAGACGTCGCGCTTAC GCTTCAAAAAAACTACGACGTGGCGCCACGAGTTGCGCTTTCCCCCTCCG CGCTTGTTCAGACCGACCTCCGACGACAGGGACTACTGCCGCCGCGCGAG GTCCCGGAGATGACCCCGCGCAAGCGTCGCCGGACCGGGACGGAAAAGCA AAGAGATGATGAGCCAGTTTCAGACTGGCTGAACTTGGCCAACAGAGTGA GCAAATTCCACTCGGAAAAGGTTACGGTGTGCACTTTCTTTTCTTCTCGA TGGCGAGGTGTGTCATCGTGCAGAAGAGGTATACAGCCATGCTGTTGACG CGGGGCCTCGTGAAGTAGCGTCGGCGGCGCGGCGATGGTGATTCCTCGAT GGACGATGACTTGACCTCGTGCGCCGCTATGCATCCATTTGAAACTTGAT CCGAGGGACGACATGTTGATGAAGCGGTTGCCCTCTTCGCGTTGACTCAC GAATATTCAAAAATTGACCGTGTTCTCGTCGTGGTTACCATCGCCGCCCG CCCATGAATTCCGTTCGCGTTTCGGGCTCAGGATGACCTTCCCGTGGACC CAAACGAACCGAAGTATTGCCTCTGCAATCAGGTCGGTTTTAGCTGGGTG AAGAATTTTCCTATCTGGGTCACTTACCCGGTTTTAATGTTGAAATTGCG CGCATGTGTTACCGTGATCTACGTTTGGGACGTTGTAGGATGCCAAGCCA GTTGACGCGGGATAAGGGTATTTGGTTGCGCTGCTGGTTGAAAAACGGAG GTACCCGTAATCGTCAATGGTAATCAGAGCTTCGGAACGAGCAACGTTTG CTTTCTGTAATCACCCATAATCTTCATCGCTTCGTGAACTCTCGAGGCCA TTTCTTCCGGCTTTCCTGAAATATTCTTGTACTTCCCCGATTATTCAGGT TTCGTACGGGGAGATGGTGGGGTGCGACAATCAATCATGCGACAACGGTG AGCAATGGCGAGCAACTCGTCTATTTGACGTGAAATCCCGAACAAACCCA CGCGGGGTTATTTTTTTTCCAGTCAGAGCGATTGCGATATACCGTACCGT ATTCGCACTATTCGTGAGATCAGCCAACAACCAGCCGTAGGTCATCTGTC GGTGTGACGTCATGCGAAGAGGGAAAATATGCGCGCGGTTCGCCTTCCGG CCGGCGGGGGGAGGAAGGGTCGGCGGCGGGGTTCGATACGATTGTAATCG CGATTTTATCGGTGAAACATCAAAGTCGTCCTTTGAGCCATCGCTGTAAC GCGTGTCTCGATTTATATGCCATACGTATCACACAAAGCAGGCGTGAATT GTATTTGTAGCGTGGGATGTTTAGAGGTGCCATTGGTTGACATTCTCTGC TATGTTATCGCACGTGTGCCGTCGGCGCTGGCGGGTCCTACCAGCAGCCA CACACAAGCCTTCTCTTGTATCCCAAGGTCTTGACGTACGTACAATCTCT GTGTCCGCACTTACTCCAAATCAGGAGAATGGTTCCACTTTGGATGCGTA AAGATCACCAAGAAGCCCGTCGGCCGATGGCTGTGCCCCGGTTGCACGGC ACAGCGCCGACAATCGCGCCGAGCCGGCGGAGCATCCTCGAAGTCGGATT TTGTGTCCCCATTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig12881:4584..7000-

>mRNA_H-elongata_contig12881.2120.1 ID=mRNA_H-elongata_contig12881.2120.1|Name=mRNA_H-elongata_contig12881.2120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig12881:4584..7000- (Himanthalia elongata Himel1 dioecious)
ATGGCGACCGCGCGCACGCAGAGGAGCCGGTCCAGTAAGGGGACGAAAAA
TATCCGATCGCGACAGCAGGAAGCTCTTGCGAATGGTCCAGTGCCTGATG
GCTGGCGTACCCCGGAGGTCAGAGCTCTCGAGATGGCGACCGCGCGCACG
CAGAGGAGCCGGTCCAGTAAGGGGACGAAAAATATCCGATCGCGACAGCA
GGAAGCTCTTGCGAATGGTCCAGTGCCTGATGGCTGGCGTACCCCGGAGG
TCAGAGCTCTCGAGGATGAGATCAACAGCCGGATCGACCTCGTGTTGCGC
ATGTCGGACGAGAAGTGGCGTCTGGCGCAGCATGCGTATGACAGTCTGGA
CATCAACATCCGACGCCTCGACTCCGACCTGGGGCGTATGGAGGATGAGA
TCAACAGCCGGATCGACCTCGTGTTGCGCATGTCGGACGAGAAGTGGCGT
CTGGCGCAGCATGCGTATGACAGTCTGGACATCAACATCCGACGCCTCGA
CTCCGACCTGGGGCGTATGGAGACCGACCTCCGACGACAGGGACTACTGC
CGCCGCGCGAGGTCCCGGAGATGACCCCGCGCAAGCGTCGCCGGACCGGG
ACGGAAAAGCAAAGAGATGATGAGCCAGTTTCAGACTGGCTGAACTTGGC
CAACAGAACCGACCTCCGACGACAGGGACTACTGCCGCCGCGCGAGGTCC
CGGAGATGACCCCGCGCAAGCGTCGCCGGACCGGGACGGAAAAGCAAAGA
GATGATGAGCCAGTTTCAGACTGGCTGAACTTGGCCAACAGAGATGACCT
TCCCGTGGACCCAAACGAACCGAAGTATTGCCTCTGCAATCAGGATGACC
TTCCCGTGGACCCAAACGAACCGAAGTATTGCCTCTGCAATCAGGTTTCG
TACGGGGAGATGGTGGGGTGCGACAATCAATCATGCGACAACGGTTTCGT
ACGGGGAGATGGTGGGGTGCGACAATCAATCATGCGACAACGGAGAATGG
TTCCACTTTGGATGCGTAAAGATCACCAAGAAGCCCGTCGGCCGATGGCT
GTGCCCCGGTTGCACGGCACAGCGCCGACAATCGCGCCGAGCCGGCGGAG
CATCCTCGAAGTCGGATTTTGTGTCCCCATTTTAAGAGAATGGTTCCACT
TTGGATGCGTAAAGATCACCAAGAAGCCCGTCGGCCGATGGCTGTGCCCC
GGTTGCACGGCACAGCGCCGACAATCGCGCCGAGCCGGCGGAGCATCCTC
GAAGTCGGATTTTGTGTCCCCATTTTAA
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