mRNA_H-elongata_contig126907.1995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126907.1995.1
Unique NamemRNA_H-elongata_contig126907.1995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126907.1995.1 vs. uniprot
Match: D7FHQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ2_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.060e-13
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 QVLEDTGDVATENVDRVKRETSRVAERLRKKRAAACASWCMMFLV 135
            QVLEDTGD AT+NVDRVKRE +RV+ERLRKKRAA  ASWCMM  V
Sbjct:  223 QVLEDTGDAATQNVDRVKRENARVSERLRKKRAAMFASWCMMITV 267
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BLAST of mRNA_H-elongata_contig126907.1995.1 vs. uniprot
Match: A0A6H5L6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.090e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QVLEDTGDVATENVDRVKRETSRVAERLRKKRAAACASWCMMFLV 135
            QVLEDTGD A +NV RVKRE +RV+ERLRKKRAA  ASWCMM  V
Sbjct:  229 QVLEDTGDAAIQNVGRVKRENARVSERLRKKRAAMFASWCMMITV 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126907.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHQ2_ECTSI7.060e-1380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6N4_9PHAE4.090e-1175.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126907contigH-elongata_contig126907:930..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionVesicle transport protein, Use1
Ec32 orthologEc-07_006290.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929752.4757283-CDS-H-elongata_contig126907:929..10641622929752.4757283-CDS-H-elongata_contig126907:929..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126907 930..1064 -
1691679144.082661-CDS-H-elongata_contig126907:929..10641691679144.082661-CDS-H-elongata_contig126907:929..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126907 930..1064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126907.1995.1prot_H-elongata_contig126907.1995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126907 930..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126907.1995.1

>prot_H-elongata_contig126907.1995.1 ID=prot_H-elongata_contig126907.1995.1|Name=mRNA_H-elongata_contig126907.1995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QVLEDTGDVATENVDRVKRETSRVAERLRKKRAAACASWCMMFLV
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mRNA from alignment at H-elongata_contig126907:930..1064-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126907.1995.1 ID=mRNA_H-elongata_contig126907.1995.1|Name=mRNA_H-elongata_contig126907.1995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig126907:930..1064- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGGAGGATACGGGAGACGTGGCCACCGAAAACGTCGACAGGGT
CAAGAGAGAAACGAGCCGCGTGGCCGAGCGCCTCCGCAAGAAACGAGCCG
CGGCTTGTGCCTCTTGGTGCATGATGTTCTTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig126907:930..1064-

>mRNA_H-elongata_contig126907.1995.1 ID=mRNA_H-elongata_contig126907.1995.1|Name=mRNA_H-elongata_contig126907.1995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig126907:930..1064- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGGAGGATACGGGAGACGTGGCCACCGAAAACGTCGACAGGGT
CAAGAGAGAAACGAGCCGCGTGGCCGAGCGCCTCCGCAAGAAACGAGCCG
CGGCTTGTGCCTCTTGGTGCATGATGTTCTTGGTGCAGGTGCTGGAGGAT
ACGGGAGACGTGGCCACCGAAAACGTCGACAGGGTCAAGAGAGAAACGAG
CCGCGTGGCCGAGCGCCTCCGCAAGAAACGAGCCGCGGCTTGTGCCTCTT
GGTGCATGATGTTCTTGGTG
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