mRNA_H-elongata_contig126417.1968.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.900e-61 Identity = 102/120 (85.00%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRALPALLEGARLKARKEGISPPADSLVALHDGARAALDDIVV 360
QATA+AYF RFYLSNSVLEHDP ILILTCVFLASKTEEQ+TNVNLLAKATG D+LQILGKEL LL+GLSFHLAVFHPYRALPAL+EGARLKA+ EGI P + ++ALHDGARAALDDIVV
Sbjct: 149 QATAIAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDIVV 268
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A7S3XH57_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XH57_HETAK) HSP 1 Score: 101 bits (251), Expect = 5.330e-25 Identity = 49/92 (53.26%), Postives = 70/92 (76.09%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRALPALLEGARLKA 276
QATA+ +F+RFYL+NS++ +DP I++LTCV+LASK EE+I NV LA+ATG+ E ++L E+ +L+GL F L +HPYRAL A L+ + A
Sbjct: 52 QATAIVFFKRFYLANSIMAYDPKIIMLTCVYLASKIEEEIINVADLAQATGQQEDKVLRAEMPVLQGLRFELRCYHPYRALRAFLDDLAVAA 143
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: D8SKW4_SELML (Uncharacterized protein CYCH-2 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKW4_SELML) HSP 1 Score: 81.6 bits (200), Expect = 6.200e-16 Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRAL 243
QATAV YF+RFYLS SV+EHDP ++LTC++++ K EE + L K +D IL EL LL+GL+F L V+ PYR+L
Sbjct: 98 QATAVLYFKRFYLSWSVMEHDPKHIMLTCIYISCKVEEFHVSAEELGKGIQQDHQVILKNELTLLQGLNFDLIVYAPYRSL 178
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A7S1GLK0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GLK0_CYCTE) HSP 1 Score: 79.0 bits (193), Expect = 3.620e-15 Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1
Query: 4 ATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGR-----DELQILGKELGLLRGLSFHLAVFHPYRALPALLEGARL-----KARKEGISPPADS--------LVALHDGARAALDDIVV 360
ATA F+RF+LSNSV+ HDP +++ FLA+K E+ +T V L + T + +IL E LL G+ L FHPY+A+ A E R K R P ++ L +HDGAR +DD++V
Sbjct: 24 ATAALLFRRFFLSNSVMLHDPKAIMVAAAFLAAKVEDAMTEVRHLEEGTKMMNSPVSQTEILQSEFALLEGIHCDLLCFHPYKAVLAFTEDLRTYIKSDKGRSLAKFPNGETNRLVVGKDLKPMHDGARQMVDDVIV 160
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A7J7Q2Y0_9CHLO (Cyclin-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q2Y0_9CHLO) HSP 1 Score: 79.3 bits (194), Expect = 5.090e-15 Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 10 AVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRALPALL-EGARLKARKEGI------SPPADSLVALHDGARAALDDIVV 360
++ +F+RFY+ +S LEHDPT ++ TC++L K EE + LAKA G + +L E+ LL+GL F L V PYRAL L E L+++K + + P D++ ARAA D +++
Sbjct: 94 SLLFFKRFYVQSSCLEHDPTRVMPTCIYLGCKVEEAYRSAESLAKAMGIEANTVLRYEVPLLQGLKFDLVVHSPYRALAGLFKELDDLRSQKSSLLDAQLLAAPPDAIDKARGRARAAADSLLL 217
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A7S4ARS1_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ARS1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 5.760e-15 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 4 ATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDEL-----QILGKELGLLRGLSFHLAVFHPYRALPALLEGAR--LKARK--------EGISPP--ADSLVALHDGARAALDDIVV 360
ATA +RFYLSNSV+ HDP ++++ FLASK E+ +T+V L + T +IL E LL G++F L FHPY+A+ A+ E R LK+ K G P L +HD A++ ++D++V
Sbjct: 115 ATAATLLRRFYLSNSVMIHDPKTIMVSAAFLASKVEDAMTDVRYLEEGTNLMNSPVTLSEILPAETKLLSGINFELLCFHPYKAVLAITEDLRTYLKSEKGRSLVKFLNGTDRPIIGQDLKPMHDDAQSIVNDVIV 250
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A7S3H848_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H848_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 9.400e-15 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 4 ATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGR-DELQILGKELGLLRGLSFHLAVFHPYRALPALL 255
AT+VAYF +FY NS++EHDP +++L+C+FLA K E+ N+ L K + E +IL E+ LL L+FHL VFHP + +++
Sbjct: 50 ATSVAYFHQFYEVNSLIEHDPRLVMLSCIFLAGKAEDNFVNLQELFKIYPKFPESRILECEIVLLESLNFHLKVFHPQNCVYSII 134
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A6A5CBA2_NAEFO (CYCLIN domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CBA2_NAEFO) HSP 1 Score: 78.2 bits (191), Expect = 1.280e-14 Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQ-------ITNVNLLAKATGRDELQILGK-ELGLLRGLSFHLAVFHPYRALPALLEGARLKARKEGISPPADSLVALHDGARAALDDIV 357
+ATA+ Y +RFYL +S++E+D ++LTC+FLA+KTEE+ + NVN + G Q + K EL LL+GL F+L V+HPYR+L A + AD+L ++GA+ + D++
Sbjct: 107 KATALTYLKRFYLKHSIMEYDIVFMMLTCIFLATKTEEKFVALAQFLENVNAITSGAGTLTSQFIFKNELILLQGLDFNLMVYHPYRSLYAYAHDLH-----DMYGNDADTL---YEGAQQKITDLI 225
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: UPI000901D688 (cyclin-H1-1 isoform X2 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901D688) HSP 1 Score: 77.0 bits (188), Expect = 2.350e-14 Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRALPALLEGARLKARKEGISPPADSLVALHDGARAALD 348
QATA+ YF+RFYL SV+EH P ++LTC+++A K EE + L K +D IL EL +L+ L F L VF PYRA+ + EG D+L L + A+ D
Sbjct: 101 QATALIYFKRFYLQWSVMEHHPKNIMLTCIYIACKAEENHVSAEELGKGIEQDHQVILNNELLVLQSLDFDLIVFAPYRAVEGFVNDIEEFRGAEG--EQLDTLKKLLESAKIEAD 214
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Match: A0A388LB46_CHABU (CYCLIN domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LB46_CHABU) HSP 1 Score: 77.8 bits (190), Expect = 2.790e-14 Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATGRDELQILGKELGLLRGLSFHLAVFHPYRALPALL 255
QATA+ YF+RFYLS SV+EHDP ++LTC++L+ K EE + + K +D +L EL +L+GL F L V+ PYR++ L
Sbjct: 228 QATAILYFKRFYLSWSVMEHDPKHIMLTCIYLSCKVEEFHVSADEFGKGIKQDPGVVLKNELTVLQGLGFDLIVYAPYRSVEGFL 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126417.1968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126417.1968.1 >prot_H-elongata_contig126417.1968.1 ID=prot_H-elongata_contig126417.1968.1|Name=mRNA_H-elongata_contig126417.1968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp QATAVAYFQRFYLSNSVLEHDPTILILTCVFLASKTEEQITNVNLLAKATback to top mRNA from alignment at H-elongata_contig126417:576..1789- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126417.1968.1 ID=mRNA_H-elongata_contig126417.1968.1|Name=mRNA_H-elongata_contig126417.1968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1214bp|location=Sequence derived from alignment at H-elongata_contig126417:576..1789- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126417:576..1789- >mRNA_H-elongata_contig126417.1968.1 ID=mRNA_H-elongata_contig126417.1968.1|Name=mRNA_H-elongata_contig126417.1968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig126417:576..1789- (Himanthalia elongata Himel1 dioecious)back to top |