mRNA_H-elongata_contig12591.1930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12591.1930.1
Unique NamemRNA_H-elongata_contig12591.1930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.310e-32
Identity = 120/419 (28.64%), Postives = 161/419 (38.42%), Query Frame = 3 
Query:  225 GSIRGFSLTAPLISSDSSTCSNGFPGIQSSEGAKNVCCSAECGRCGGRGCSDLVGG----DENCCVSTIYDNGGLCSTLGAAPCIIYDDEADSWAPTETSSTSSLSGTEYFGSSSSPTPSPTEKASVLLPGYVTGTSYMGCFEETGSDPFDYRADIQSMKPSMCYDECVSKGALYMGLMGSEECACGDDNDYLDTDKTAGNCDXXXXXXXXXXXXGDAFGLYEIMSISSSDAAVNSADIDGNGEIDGYAYMDCNDF-DGEAPFDAVLADDNMTPEMCFEICAIVSARYFGVYAGKECGCGSNSDYIVF------GGTPGTCDMSCAGDSAYSCGGTDAYDLYQLVDYNIGLDSSHDGGLLECSNGIPGVESADGSVCCAAACGTCDGSRCVGTGGCCAEYIKTKYEYCSEEMEAPCIID 1448
            G  RG SL     S+ + TCSNG  GI+S+ G  +VCC   CG CGG  C++        D +CC   I  +G  CS    APCII D   +S   T     S+  G E                     G  +G   + C  E                  +C     ++ AL  GL   + C         D  K    C              D  G   +   S+                  Y  + C    D E PF       ++T E C+E+CA  S+ YFG+  G  C CG    ++          T  TC  +C G    +CGG  A+DLYQ+              L  C+ GI GVE+A G VCC  +CG C G RCVG GGCC   I+++ + C     APC+ +
Sbjct:   37 GDARGRSLQ----SATTQTCSNGIEGIESANG--DVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCIIDDASQESAGDT----CSNTDGVE---------------------GISSGDGDVCCPSEC----------------VLCGGRDCTEAALAAGLADGDCCVS-------DITKEGVKCSDSGAAPCVAYDSEDETGSPLVQEASTPV----------------YIALGCGKIGDYEDPFTVSSTVSDLTAEACYELCASESSLYFGLVEGNVCSCGDEETFVETFLDTYDEQTAATCSTACPGSPDETCGGAQAFDLYQI--------------LPTCTGGIVGVEAASGDVCCPFSCGECGGDRCVGEGGCCEHTIQSREDLCEYTNAAPCVFN 371
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.130e-22
Identity = 101/352 (28.69%), Postives = 133/352 (37.78%), Query Frame = 3 
Query:  276 STCSN--GFPGIQSSEGAKNVCCSAECGRCGGRGCSDLVGGDENCCVSTIYDNGGLCSTLGAAPCIIYDDEADSWAPTETSSTSSLSGTEYFGSSSSPTPSPTEKASVLLPGYVTGTSYMGCFEETGSDPFDYRADIQSMKPSMCYDECVSKGALYMGLMGSEEC------ACGDDNDYLD--------TDKTAGNCDXXXXXXXXXXXXGDAFGLYEIM------------SISSSDAAVNSADIDGNGEIDGYAYMDCNDFDGEAPFDAVLAD--DNMTPEMCFEICAIVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSAYSCGGTDAYDLYQLVDYNIG 1241
            STC N  G PG++S     + CC   C  CGG GCS   G   +CCVS I   G  C   G APC I D                       G + +PTP P     V +             E T   P             +C     S G   +     + C      AC  DN YLD         ++T   CD            G  FG Y               +IS  +      DIDG+G +D Y ++ C      A  +    D  + MT  +CFE CA  SA YF ++ G  C CG+   Y+      G CD  C+GD   +CGG   YDLY+L++ ++G
Sbjct: 2979 STCPNAGGIPGVESP--GSSACCPTSCVSCGGVGCSSR-GEVTDCCVSAIMTKGQACEVSGTAPCYIGDG----------------------GEAPAPTPEPVRPTPVTM-------------EPTTEPP------AAPTTQGLC-----SNGVPGIESASGDYCCPATCRACDGDNCYLDGLFCCGDDIEETGVLCDDSEEAPCIIDIDGGGFGTYAPTGAPTGTPFDFDPTISGGNDDSMDVDIDGDGNVDSYEHVGCYALSPTASVELEKLDGEEQMTKMLCFEACAAESADYFALFKGSVCTCGNEGGYLTMPMEMGICDTPCSGDVTATCGGYYDYDLYELMESDVG 3281
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: A0A0F4ZFK6_9PEZI (Uncharacterized protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZFK6_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 9.580e-13
Identity = 68/214 (31.78%), Postives = 94/214 (43.93%), Query Frame = 3 
Query:  600 PGYVTGTSYMGCFEETGSDPFDYRADIQS-MKPSMCYDECVSKGALYMGLMGSEECACGDDNDYLDTDKTAGNCDXXXXXXXXXXXXG-DAFGLYEIMSISSSDAAVNSADIDGNGEIDGYAYMDCNDFDGEAPF--DAVLADDNMTPEMCFEICAIVSARYFGVYAGKECGCG---SNSDYIVFGGTPGTCDMSCAGDSAYSCGGTDAYDLYQ 1220
            P  ++GT Y+GCF+E  +     RA  Q+ M   +C   CV  G LY G     EC CG++   L  D T  +C             G D   +Y   +I                 I GYAY  C      A     +   D+ MT EMC   C++    YFGV  G +C CG   SN+  I+    P +C M+C G+S+ +CGG+D   LY+
Sbjct:  159 PATISGTPYLGCFQEAATRVLPNRALAQANMTAEICLANCV--GYLYFGTEYGNECWCGNNKPDLLADAT--DCSMVCAGDDEQLCGGPDRLTVYGPQAIKQDTLP----------SIAGYAYQGCYSDSATARVLTGSFYYDEAMTLEMCATDCSLY--EYFGVEYGTQCYCGTSVSNTSAIM---PPTSCTMTCGGNSSETCGGSDRISLYK 353
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: A0A6H5L0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.170e-8
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  960 YMDC-NDFDGEAPFDAVLADDNMTPEMCFEICAIVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSAYSCGGTDAYDLY 1217
            Y+ C  D      F  V   D+MT  +C + CA     Y+G   G+EC CG+N+DY V+G    TCDM C GDS+ +CGG +A   Y
Sbjct:   86 YLGCFGDSQTGRVFPVVFGSDSMTTAICADTCA--EYAYYGTQYGRECWCGNNADYAVYGEV--TCDMECTGDSSATCGGFNAMSFY 168
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.420e-8
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  282 CSNGFPGIQSSEGAKNVCCSAECGRCGGRGCSDLVGGDE-NCCVSTIYDNGGLCSTLGAAPCII 470
            CSN   GI+       VCC+AECG+CGG GC  + G D  NCC++ + +N  LCS  GAAPC+I
Sbjct:   44 CSNSMNGIEGINENGVVCCTAECGQCGGEGCGSVPGLDNTNCCINGVLNNQELCSVAGAAPCVI 107
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.730e-8
Identity = 114/479 (23.80%), Postives = 158/479 (32.99%), Query Frame = 3 
Query:  189 MLPHSFSCFPPPGSIRGFSLTAPLISSDSST-----CSNGFPGIQSSEGAKNVCCSAECGRCGGRGCSDLVGGDENCCVSTIYDNGGLCSTLGAAPCIIYDDEADSWAPTETSSTSSLSGTEYFGSSSSPTPSPTEKASVLLPGYVTGTSYMGCFEETGSDPF--DYRADIQSMKPSMCYDECVSKGAL-YMGLMGSEECACGDD---NDYLDTDKTAGNCDXXXXXXXXXXXXGDAFGLYEIMSISSSDAAVNSADIDGNGEIDGYAYMDCNDFDG---------------------EAPFDAVLADDNMTPE--------------MCFEICAIVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCD----------MSCAGDSAYSCGGTDAYDLYQLVDYNIGLDSSHDGGLLECSNGIPGVESADGSVCCAAACGTCDGSRCVGTGG----CCAEYIKTKYEYCSEEMEAPCII 1445
            +L     C   P  I   S T P  ++ + T     C  G  GIQ    AK VCCSA CG CGG GCS   GG + CC   +  +G LCS  G APCI                           +  +PTP+P+   +V  P               G  P        IQ+ K   C   C S G +   G  G  +  CG     +  L        C         XXXX       E+         + + ++  +        + C+  DG                     EAP    +     TPE              MC     I+  +   V     CG    S      G P  C            S  G++    G                ++      + EC  GI G++++D  VCC+ +CG+C GS C G  G    CC   ++    +CS   EAPC++
Sbjct:  103 VLDAGIECGEAPCVIDASSSTTPAPATPAPTSEVPMCDGGIVGIQ----AKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCSVTGEAPCI---------------------------TGPAPTPAPSPPXTVEGPAPTLEPXXXXXXPPAGEVPMCDGGIVGIQA-KEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAP---CITGPAPTPEXXXXXXXXXTVEAPMCDG--GIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXXTIE------VPECDGGIVGIQASD--VCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCLV 536
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-7
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 3 
Query:  255 PLISSDSSTCSNGFPGIQSSEGAKNVCCSAECGRCGGRGCSDLVGGDENCCVSTIYDNGGLCSTLGAAPCIIYDDE 482
            P  S  + TC  G  G+Q    A NVCC+  CG CGG GCSD  GG++NCC   I      CS  G APCI+   E
Sbjct:  491 PAPSRAAGTCEGGIVGVQ----ASNVCCALSCGSCGGDGCSDRDGGEDNCCGVEIRTANLDCSVTGEAPCIVTSPE 562
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: A0A6H5J9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.850e-7
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:  330 VCCSAECGRCGGRGCSDLVGGDE-NCCVSTIYDNGGLCSTLGAAPCII 470
            VCC+AECG+CGG GC  + G D  NCC++ + DN  LCS +GAAPC+I
Sbjct:   13 VCCTAECGQCGGEGCGSVPGLDNTNCCINGVLDNQELCSVVGAAPCVI 60
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: A0A1B9HB06_9TREE (Uncharacterized protein n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9HB06_9TREE)

HSP 1 Score: 62.0 bits (149), Expect = 5.270e-6
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 3 
Query:  684 SMKPSMCYDECVSKGALYMGLMGSEECACGDD-NDYLDTDKTAGNCDXXXXXXXXXXXXGDAFGLYEIMSISSSDAAVNSADIDGNGEI----DGYAYMDC--NDFDGEAPFDAVLADDNMTPEMCFEICAIVSARYFGVYAGKECGCGSN-SDYIVFGGTPGTCDMSCAGDSAYSCGGTDAYDLYQLVD 1229
            SM  + C + C ++G    G+    EC CG   ++    +K + NC+            G        +++  + A V+    D + +      G++ + C      G A   A  + ++MTPE C   CA +  +Y GV  G EC C  + S+      T   C MSC+GD A  CGG++A  LYQ  D
Sbjct:  210 SMTFNQCTNYCQNQGYPLAGVEYGSECYCGAVLSNGASLNKPSSNCNVKCAGASDLKCGGP-----RALTLFVNQAGVSGLSSDYSSKPVNLPSGWSSVSCIKEATSGRALASARTSSNSMTPETCINYCAGLGWQYAGVEYGSECYCADSLSNGADLSLTSTGCTMSCSGDKAQICGGSNAVQLYQNPD 394
[Close]
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Match: D8LQX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.340e-6
Identity = 55/185 (29.73%), Postives = 80/185 (43.24%), Query Frame = 3 
Query:  687 MKPSMCYDECVSKGALYM--GLMGSEECACGDDNDYLDTDKTAGNCDXXXXXXXXXXXXG-DAFGLYEIMSISSSDAAVNSADIDGNGEIDGYAYMDC-NDFDGEAPFDAVLADDNMTPEMCFEICAIVSA--RYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSAYSCGGTDAYDLYQL 1223
            M P++C D C  + + Y         EC C D++  L     A  CD            G D+F LY++      +  + S   D N       Y+ C  D   +    A  + + MT E C   CA  S    Y+    G EC C +   ++  G   GTCDM+C GD+  +CGG DA+DL++L
Sbjct:    1 MTPTVCADYCRGQPSSYTHYATQYGRECWCQDESVDLRRHGAA-TCDYQCSGDDSIVCGGFDSFSLYDL-----EEGELPSPPTDDN-------YVGCFADDQNDRVLGAKSSSNEMTSEACASYCADESPGNTYYATQWGHECWCAAEV-HLRHG--DGTCDMACTGDAGTTCGGFDAFDLFEL 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12591.1930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FJ60_ECTSI2.310e-3228.64WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ68_ECTSI2.130e-2228.69WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0F4ZFK6_9PEZI9.580e-1331.78Uncharacterized protein n=1 Tax=Thielaviopsis punc... [more]
A0A6H5L0X8_9PHAE2.170e-841.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ5_ECTSI6.420e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWJ0_9PHAE6.730e-823.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U7_ECTSI1.010e-746.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S1_9PHAE3.850e-758.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1B9HB06_9TREE5.270e-627.89Uncharacterized protein n=2 Tax=Kwoniella heveanen... [more]
D8LQX7_ECTSI5.340e-629.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12591contigH-elongata_contig12591:1049..7209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue6.9e-27
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons8
Model size3573
Cds size1302
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12591.1930.1prot_H-elongata_contig12591.1930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12591 3628..7060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.8660681-UTR-H-elongata_contig12591:1048..31411622929744.8660681-UTR-H-elongata_contig12591:1048..3141Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 1049..3141 -
1691679140.8698716-UTR-H-elongata_contig12591:1048..31411691679140.8698716-UTR-H-elongata_contig12591:1048..3141Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 1049..3141 -
1622929744.8777933-UTR-H-elongata_contig12591:3598..36271622929744.8777933-UTR-H-elongata_contig12591:3598..3627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 3599..3627 -
1691679140.882215-UTR-H-elongata_contig12591:3598..36271691679140.882215-UTR-H-elongata_contig12591:3598..3627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 3599..3627 -
1622929744.9966314-UTR-H-elongata_contig12591:7060..72091622929744.9966314-UTR-H-elongata_contig12591:7060..7209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 7061..7209 -
1691679140.975389-UTR-H-elongata_contig12591:7060..72091691679140.975389-UTR-H-elongata_contig12591:7060..7209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12591 7061..7209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.8913958-CDS-H-elongata_contig12591:3627..38181622929744.8913958-CDS-H-elongata_contig12591:3627..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 3628..3818 -
1691679140.8950605-CDS-H-elongata_contig12591:3627..38181691679140.8950605-CDS-H-elongata_contig12591:3627..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 3628..3818 -
1622929744.9059098-CDS-H-elongata_contig12591:4185..44111622929744.9059098-CDS-H-elongata_contig12591:4185..4411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 4186..4411 -
1691679140.9044921-CDS-H-elongata_contig12591:4185..44111691679140.9044921-CDS-H-elongata_contig12591:4185..4411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 4186..4411 -
1622929744.9215605-CDS-H-elongata_contig12591:4659..47721622929744.9215605-CDS-H-elongata_contig12591:4659..4772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 4660..4772 -
1691679140.9137404-CDS-H-elongata_contig12591:4659..47721691679140.9137404-CDS-H-elongata_contig12591:4659..4772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 4660..4772 -
1622929744.9397-CDS-H-elongata_contig12591:5343..55661622929744.9397-CDS-H-elongata_contig12591:5343..5566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 5344..5566 -
1691679140.9234276-CDS-H-elongata_contig12591:5343..55661691679140.9234276-CDS-H-elongata_contig12591:5343..5566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 5344..5566 -
1622929744.9507983-CDS-H-elongata_contig12591:6007..61741622929744.9507983-CDS-H-elongata_contig12591:6007..6174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6008..6174 -
1691679140.9336681-CDS-H-elongata_contig12591:6007..61741691679140.9336681-CDS-H-elongata_contig12591:6007..6174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6008..6174 -
1622929744.9682338-CDS-H-elongata_contig12591:6531..65881622929744.9682338-CDS-H-elongata_contig12591:6531..6588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6532..6588 -
1691679140.9410603-CDS-H-elongata_contig12591:6531..65881691679140.9410603-CDS-H-elongata_contig12591:6531..6588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6532..6588 -
1622929744.9788225-CDS-H-elongata_contig12591:6735..70601622929744.9788225-CDS-H-elongata_contig12591:6735..7060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6736..7060 -
1691679140.9559677-CDS-H-elongata_contig12591:6735..70601691679140.9559677-CDS-H-elongata_contig12591:6735..7060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12591 6736..7060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12591.1930.1

>prot_H-elongata_contig12591.1930.1 ID=prot_H-elongata_contig12591.1930.1|Name=mRNA_H-elongata_contig12591.1930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=434bp
MPYPAVVLNWMYWMLPHSFSCFPPPGSIRGFSLTAPLISSDSSTCSNGFP
GIQSSEGAKNVCCSAECGRCGGRGCSDLVGGDENCCVSTIYDNGGLCSTL
GAAPCIIYDDEADSWAPTETSSTSSLSGTEYFGSSSSPTPSPTEKASVLL
PGYVTGTSYMGCFEETGSDPFDYRADIQSMKPSMCYDECVSKGALYMGLM
GSEECACGDDNDYLDTDKTAGNCDSTCAGVDSICGGGDAFGLYEIMSISS
SDAAVNSADIDGNGEIDGYAYMDCNDFDGEAPFDAVLADDNMTPEMCFEI
CAIVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSAYSCGGT
DAYDLYQLVDYNIGLDSSHDGGLLECSNGIPGVESADGSVCCAAACGTCD
GSRCVGTGGCCAEYIKTKYEYCSEEMEAPCIID*
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mRNA from alignment at H-elongata_contig12591:1049..7209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12591.1930.1 ID=mRNA_H-elongata_contig12591.1930.1|Name=mRNA_H-elongata_contig12591.1930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6161bp|location=Sequence derived from alignment at H-elongata_contig12591:1049..7209- (Himanthalia elongata Himel1 dioecious)
CCCCACCCGCGTTCTTATATTCAGTTGATACAGTATATGTCACCAGCGAA
GAGTAGCTGTTACCTAGTCCCGAAAAGGGTGGTCCGGTAGCGAGATAGAC
GTAAAGCTTATGCCTAGAAGACCTCGGCTGGGCTGTCTCGGCGGGGGGAA
TGCCGTACCCTGCTGTTGTTCTCAATTGGATGTATTGGATGTTGCCCCAT
TCCTTTTCATGCTTCCCGCCGCCCGGGTCCATCCGGGGTTTCTCCCTGAC
AGCCCCCCTCATTAGCTCAGATTCGAGTACCTGTAGCAATGGCTTTCCGG
GAATCCAGTCCTCGGAAGGGGCGAAGAATGTGTGCTGCTCGGCAGAGTGC
GGCAGATGCGGTGGGAGAGGGTGCTCCGACTTAGTTGGGGGGGACGAAAA
TTGCTGCGTCTCCACGATCTACGACAATGGTGGCCTCTGCAGCACTCTCG
GAGCAGCGCCCTGTATTATTTACGGTAAGCGAGCATCTCCTTTCCTGTCC
GGTCTGGATGTTTGCCTCCGCTTTCCCCAAGCTAACCCCTTTCCCCGTCC
CGACCCAAACGCCTCTATTTGTCGTTATCGTTGGGTTGTTACTGCCTCCG
TCTCGTGTGATGGCGACGAAGATGACGAAGCCGATTCTTGGGCACCTACG
GAAACCTCATCGACTTCTTCACTTTCTGGTCAGTCCAGACTCGTTTTGCG
AAGGGGGAAGGCTATAGTGTTCACAATTCAGTAATGGGATGAGTTGTTTG
CCCCTTTCCGGGGATTCAATCGTCATATCCCCGGTCATGAACGTCTCAGG
GGAAGCATTTGGTGATAATTCTGATCCCTAGGAATGCTTGGAGGGATTGA
TTCGGCACCGCACATGTGTCCGGTTTTAATATTTCGCACAGTTACGGTAT
TTTACTGATTCCTTGCCACTCCCCAGAGAAACAAACCTTCTCGATGCGCT
CGAACTCCCCTCCCGTGCCTGTTGTTTTGCTCCCCTTCCCTGCTTGCCTC
TTGTTAACTTCGCCTGTCGCTCATACGCGCCGAAGGAACTGAATACTTTG
GGAGTTCTTCGTCACCCACGCCTTCCCCCACGGAGAAGGCGTCGGTCCTA
TTGCCGGGCTACGTCACGGGAACTTCGTACATGGGATGTTTCGAGGAGAC
CGGGTCGGACCCCTTCGATTACCGCGCAGATATTCAGAGCATGAAGCCGT
CGGTGAGCGGGTCCCACGAAGCGAATTTGCCATGTTGCGTAGTGAGAGGT
TGTCAAACGAAGCGTTTCTAGGCGAGGGTGTAAGCGAGACGGAACGGAAC
GGAACGAGTTATTGAAAATTTTTGGATCCTTCTTTCTAGTTTTGATAATT
TCGTAACCCCGTGGTCAAATTTTACCAATTTCCTTCTTTTTACTTGTTGA
ATTTTGTGTTTTAGTTTTCTAGGGCGGTTTGCGTGAGAGATAGTCTAGAC
CCCTTTACCTCAAAATAATTAAGAAAGGGCCTCATGCAAAGCGCTCCGAT
TTACATCGCGGCAGTGACCCGCCCCCGTTCTCGAGAATACCATCCAAATC
CGCATAGTATCCATGGAGTACCCTTTGCGCATCTTCCTTCCGTTGATGGG
CGTCGCGAACGAAACACGGAACGAACGGACGCAACCCCAACAGATGTGCT
ACGACGAGTGCGTATCAAAGGGTGCACTGTACATGGGACTGATGGGCAGC
GAGGAATGCGCCTGCGGAGACGACAATGACTACCTAGATACGGACAAGAC
CGCGGGTAACTGTGATTCCACCTGCGCTGGCGTGGACAGCATCTGCGGGG
GTGGGGATGCATTTGGTCTTTACGAGATCATGTCGATCAGCAGCTCCGAT
GCCGCCGTCAACAGTGGTGAGTCTAACGAAGGCTGATGCCGAAGCTGCAG
TGGCGCATATATTTTCTGGCGTGTGCTGACGTAGCGAAGGGGACACGATG
CGATACGGAGCGAGACCTAAAATTAGTGGGAGGGGGGACAAAGGAGACAC
ACTCAAAGTCTTTGATTCGAGTGTGGGTGAAGATTCATCTCTCAGTAACG
ATAGCTGGTGACATAGCACGCCCCTCTTGGCGACGTACTCCAACATGATG
CGCCCGTTCTGCAGTGAATGCGGTCCGGTCTGAAGCTCCCACGCAACCTT
TTTATTAAAAAAAAAACATGAACTCATTCCAACCCTCCGAACATCCACAC
CTTCTTACCACGATGAGAGGTGTAATCCAGGGGACCAACTATCGTCAGGT
TCGAATGTGTACATTACTACTACCTTTGAGCCCAAAATCGTCACATGTGA
TAATTCTTGTTCCCCAATAGTAAATTCATCGGATCAAGGGTATAATGTCA
AGGGTCTAATCATTATCCCGTACACTTACATAATCCTTCATGACTTCATG
TGGGAACGCCTTTTTGTACCGGAACCGGAATGATCAGCGGATATAGATGG
CAACGGTGAGATTGACGGTTACGCCTACATGGATTGCAATGACTTCGATG
GCGAAGCCCCCTTCGACGCCGTATTGGCAGACGACAACATGACGCCAGAG
GTAAGAACGAAGGAGGGATTATCGAATGTGGGGATTGGGGATAGGGTCTC
TAGTATATCCAAAAGTCTTGTCGGCGTATCTGATCGTATCGTTTAGACAC
TCGTTTGTGTCTAGAAACAGATAGTCCTAAAATACGGGAGGGAGAGATCT
TGGAGGACTAAAAGTAGGCAGTGTCTCTCACAAATTCGTGGCTTACATCC
GCCCCCTCTCTTCCTTTTCCTCTGCCATCGCGTTCTCTCTTCTCTCAGAT
GTGTTTCGAGATTTGCGCTATTGTGTCGGCACGATATTTTGGTGTCTATG
CTGGCAAAGAATGTGGCTGTGGGAGTAATTCTGATTACATCGTGTTCGGG
GGCACTCCGGGGACGTGCGACATGTCATGCGCCGGGGACTCGGCGTATTC
CTGTGGGGGTACTGACGCATACGACTTGTACCAGCTTGTTGACTACAATA
TTGGTCTCGACTCATCCCACGATGGTAAGCCCCCTTTTCCACGAAAGCAA
TCACACATAAATAATAAGTTTGTACCATAATTTCTCCTATTTTCACGGCG
TGAATATGTTGCTATGGAACTCGATGAACAGGCGCCTGGAACTGGATTGT
ATGACGCCTCAACTCCGTATTTGTTTTACTCTTTTTTGAAAACACCAAGT
GGAGGATTTGAGTTGTGGGGCTGGGAAACGTTTGCCAACACATTTCCCCA
GGAGTATGACGTCGAAAAGGCTAAATAGTGCGCGGGGTTGAGGGGCAGAA
TATTTACACCAGAAGCCAGCGCATGTCCCTAAAACCTCCCTGCACGTTGT
CCCCCCCCACACACACACCACGCACACTCATCTTGTCGCAGGCGGTCTCC
TCGAATGTAGCAACGGTATTCCAGGCGTGGAGTCGGCAGACGGCTCTGTG
TGCTGCGCTGCTGCATGCGGCACATGTGACGGTTCACGATGCGTCGGCAC
CGGTGGTTGCTGCGCTGAATACATAAAGACCAAGTACGAATACTGCAGTG
AGGAGATGGAAGCCCCTTGCATAATCGATTAGAAGAAAGAGGGGACGGAT
CCCTCAAAACAGTGAGTGACAGATGTATATCGCACTGGCCACTCTCGATT
GTGCAATATTATGTTTTTGGCGTTTTTGCCCTCGTCAATAAGGTCTGGAA
GATGGAAGGCGTTACTCCAGCGCTAAGAATAGTCTAGACTACTTTGACCG
AAAAGGATGAAAATATTAAGTCAAGGATACGTCCCCACACTAAAACTGCT
TGCTGGAATCCGTATTTCCTCGTCGCTTCTAAAACAACCCTGGACTGCAC
CTCTCATAGCGCCAAGAAAGCGCGAATGTTCTGAGAGTTTAAATGATTTC
TCATATGCTTGGTACGAAAAAGTTAAAGTAGTGGGAATAATGTAATAATA
TTTGAACACATTGTATCGTGCACCCTGCCTAACGCACTTTTCGACATCTT
GCCTCCCCTTGTTTCCCTTACCCCGCACCCATAACGCCAATTTTATCTGT
ATTTCTTTATTTCGCCAGCCCGTTCGTGGACGCCACTTCATCGTGGAAAC
AGCCCCTTACCAAAGCCAGAGGCAGAAGCCAACGGCTCAACTTCATCTAG
ACGGGTTTTAAAGTCTCTCGACCCATGAGTATAAAAGGTCGACATGGTCC
TCTCGCTTGACGGGCTGCGTGAGTACGGTTTCCTTTTTGTTTTTGTTTTA
CGCACCCAGCTGTCAAAACTTAACCCAACCGTTGTTTGTAACCGACCTCT
CCCCCCTCCCCCCTCGTCTCCAACCGGGCATCGACGAAATTCGGGGGTTA
AAACGAAACACAAGGTGTAGTGTGTGTCTCAACACACCTTAGAGTGCAGC
ATCCTGCAAAGTCGGGCTATACACCGAGGGTGGGTCTCTTTCTCCTTTTA
TGTAAAATAAATAAACGAGGGCACGAGAGGTCTTTGTTTCACATCAGCAC
AGGGGTGTCTAATCGAATTCTTGGTAAGGTTAACCGGAAGGAAAACTCAC
ATCGCTCAAGCCAGTCCGTCGCGACGTTTCGGATATAATAGGTGTTCAAG
GGGGGGTCGCTATTACGTGATCCGACCTGGGTACGCCACGACTTTGTTTT
GTTTTTCTTTTTATCAATTTGTTTCGACTTTTTTATATTCGAACGGCAAA
CGAAGAAAAAGGCGCAGCGCAAATTTGTTCGAGACAATCGCCGTGGCTCC
GTTAAAACACAGGATGGGTGTGGGAATTGAATATGTAGAGATCTTATATG
CGCAGAGCTACCGACAGCTTCTTCCTTGAACGAGCATGTGGCGCTTCCGA
CTCTGTTGAAAAGTGAACAAGCAATTTATTTATTTTGCGCTCCTCGGAGA
CAGTGTTTTGACAGTCTCGTGTCGTGTTTGGACAGTCTCGTCCGATAAAA
ATTGGTGTTTTGATAGGTTATCAGGATATCAATTTCTCTAGTTGGTGCTT
ACCGTGGCGGGTCAGCCCGATCAATGTCAATATTTGATTTTGGTTTTGGA
GAGGTTCAGGCAACAATCAGGACTTGAAAGTGTCATGAAAGCGACGGCTT
GTATCTGGGGCTCGGAATCCCGTGAAATCGTTGTCGATATTTGAAATGGT
TTGGACGTACAGAGAGTATCCAAGATAGGGTTGGTGTTTGGGATACATTC
GTACAGCGGGTATGTCGATGGTCGTGGCGTTAAAGGGGCCTTTTGATCCA
CCGATTTAGCTGTTGTTCTCGAGACGAGGTGGGAACCTGACCCCCAACTC
TCTGTAGGTTTCAATGTAGGTTTCAAAATACGCCGTTGTTGTGCCTGAAA
TCGTCCATCTAGTCTTAGCGTGGACTGTTCACGGGCAAGGGAAGACAAAA
TAATGTCTTATGGTCGCGCGATCTCTCCCAAATATTTCTCTTACCACCGT
TGCGGCAGCGAGCTCTCTCCTTTTTACCATTTTTTACCCCAGAAAAACAT
CTTGATGTTCAGCTCCCTCTCAGGAAGAGGGTTTTCGAGATGAACGGTCC
GCCCGCCACGTTAGGGATTAGGGGGGTAAAGAAGACGGTAGTAGGCGGTG
TTCGTGAATGATTCTTATTTTCATTCCGAAGCGAAGAGCTTGGTGTTTCG
TAAGCCAGCACTTATTAGGGAAATTATTGGGACGATGATGACGGGAGTAG
TAATAAAATGGGTACACGGGAAAGGGGTGAGAATGCTCGGTTTTGAAGAG
AACGTTTCTCACTAAGTATATCTATGTGATAAGTGAGGGTTTGGAGCTAT
TCCCTTCATATAGTTGTGGGAAAAATCGCCAGCAATTCGATGATATAATG
AGGGTGTTTATGTGAAGGGGTCTGATGTAGCGCACCAGTCGACGTTTTCC
ACTCACAGATGATGTGGTGGTGTGTCAAAATGGCGTAGTAATGCGACGTT
ATTGAGCCTGAAATCGTCAGTCCTGTCGTTACATGTTGAGCTAATTGTTA
TCGTATGTTCCGGTGCCATCGAGTCTTAGCGTGGACTGCTTGGTAAAGAA
GACTACTTCACGTGGACCACCGCTTGTATGTCATTTGGTATTAATAGCTG
CTGCGTGCTGTGCGTTGATTCAATGGGCGCGTTAAATGCCCCACGAAAGA
GTCTATAGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig12591:1049..7209-

>mRNA_H-elongata_contig12591.1930.1 ID=mRNA_H-elongata_contig12591.1930.1|Name=mRNA_H-elongata_contig12591.1930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2604bp|location=Sequence derived from alignment at H-elongata_contig12591:1049..7209- (Himanthalia elongata Himel1 dioecious)
ATGCCGTACCCTGCTGTTGTTCTCAATTGGATGTATTGGATGTTGCCCCA
TTCCTTTTCATGCTTCCCGCCGCCCGGGTCCATCCGGGGTTTCTCCCTGA
CAGCCCCCCTCATTAGCTCAGATTCGAGTACCTGTAGCAATGGCTTTCCG
GGAATCCAGTCCTCGGAAGGGGCGAAGAATGTGTGCTGCTCGGCAGAGTG
CGGCAGATGCGGTGGGAGAGGGTGCTCCGACTTAGTTGGGGGGGACGAAA
ATTGCTGCGTCTCCACGATCTACGACAATGGTGGCCTCTGCAGCACTCTC
GGAGCAGCGCCCTGTATTATTTACGATGCCGTACCCTGCTGTTGTTCTCA
ATTGGATGTATTGGATGTTGCCCCATTCCTTTTCATGCTTCCCGCCGCCC
GGGTCCATCCGGGGTTTCTCCCTGACAGCCCCCCTCATTAGCTCAGATTC
GAGTACCTGTAGCAATGGCTTTCCGGGAATCCAGTCCTCGGAAGGGGCGA
AGAATGTGTGCTGCTCGGCAGAGTGCGGCAGATGCGGTGGGAGAGGGTGC
TCCGACTTAGTTGGGGGGGACGAAAATTGCTGCGTCTCCACGATCTACGA
CAATGGTGGCCTCTGCAGCACTCTCGGAGCAGCGCCCTGTATTATTTACG
ATGACGAAGCCGATTCTTGGGCACCTACGGAAACCTCATCGACTTCTTCA
CTTTCTGATGACGAAGCCGATTCTTGGGCACCTACGGAAACCTCATCGAC
TTCTTCACTTTCTGGAACTGAATACTTTGGGAGTTCTTCGTCACCCACGC
CTTCCCCCACGGAGAAGGCGTCGGTCCTATTGCCGGGCTACGTCACGGGA
ACTTCGTACATGGGATGTTTCGAGGAGACCGGGTCGGACCCCTTCGATTA
CCGCGCAGATATTCAGAGCATGAAGCCGTCGGAACTGAATACTTTGGGAG
TTCTTCGTCACCCACGCCTTCCCCCACGGAGAAGGCGTCGGTCCTATTGC
CGGGCTACGTCACGGGAACTTCGTACATGGGATGTTTCGAGGAGACCGGG
TCGGACCCCTTCGATTACCGCGCAGATATTCAGAGCATGAAGCCGTCGAT
GTGCTACGACGAGTGCGTATCAAAGGGTGCACTGTACATGGGACTGATGG
GCAGCGAGGAATGCGCCTGCGGAGACGACAATGACTACCTAGATACGGAC
AAGACCGCGGGTAACTGTGATTCCACCTGCGCTGGCGTGGACAGCATCTG
CGGGGGTGGGGATGCATTTGGTCTTTACGAGATCATGTCGATCAGCAGCT
CCGATGCCGCCGTCAACAGTGATGTGCTACGACGAGTGCGTATCAAAGGG
TGCACTGTACATGGGACTGATGGGCAGCGAGGAATGCGCCTGCGGAGACG
ACAATGACTACCTAGATACGGACAAGACCGCGGGTAACTGTGATTCCACC
TGCGCTGGCGTGGACAGCATCTGCGGGGGTGGGGATGCATTTGGTCTTTA
CGAGATCATGTCGATCAGCAGCTCCGATGCCGCCGTCAACAGTGCGGATA
TAGATGGCAACGGTGAGATTGACGGTTACGCCTACATGGATTGCAATGAC
TTCGATGGCGAAGCCCCCTTCGACGCCGTATTGGCAGACGACAACATGAC
GCCAGAGCGGATATAGATGGCAACGGTGAGATTGACGGTTACGCCTACAT
GGATTGCAATGACTTCGATGGCGAAGCCCCCTTCGACGCCGTATTGGCAG
ACGACAACATGACGCCAGAGATGTGTTTCGAGATTTGCGCTATTGTGTCG
GCACGATATTTTGGTGTCTATGCTGGCAAAGAATGTGGCTGTGGGAGTAA
TTCTGATTACATCGTGTTCGGGGGCACTCCGGGGACGTGCGACATGTCAT
GCGCCGGGGACTCGGCGTATTCCTGTGGGGGTACTGACGCATACGACTTG
TACCAGCTTGTTGACTACAATATTGGTCTCGACTCATCCCACGATGATGT
GTTTCGAGATTTGCGCTATTGTGTCGGCACGATATTTTGGTGTCTATGCT
GGCAAAGAATGTGGCTGTGGGAGTAATTCTGATTACATCGTGTTCGGGGG
CACTCCGGGGACGTGCGACATGTCATGCGCCGGGGACTCGGCGTATTCCT
GTGGGGGTACTGACGCATACGACTTGTACCAGCTTGTTGACTACAATATT
GGTCTCGACTCATCCCACGATGGCGGTCTCCTCGAATGTAGCAACGGTAT
TCCAGGCGTGGAGTCGGCAGACGGCTCTGTGTGCTGCGCTGCTGCATGCG
GCACATGTGACGGTTCACGATGCGTCGGCACCGGTGGTTGCTGCGCTGAA
TACATAAAGACCAAGTACGAATACTGCAGTGAGGAGATGGAAGCCCCTTG
CATAATCGATTAGGCGGTCTCCTCGAATGTAGCAACGGTATTCCAGGCGT
GGAGTCGGCAGACGGCTCTGTGTGCTGCGCTGCTGCATGCGGCACATGTG
ACGGTTCACGATGCGTCGGCACCGGTGGTTGCTGCGCTGAATACATAAAG
ACCAAGTACGAATACTGCAGTGAGGAGATGGAAGCCCCTTGCATAATCGA
TTAG
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