mRNA_H-elongata_contig12522.1895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12522.1895.1
Unique NamemRNA_H-elongata_contig12522.1895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A6H5L2V5_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2V5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.120e-51
Identity = 86/124 (69.35%), Postives = 99/124 (79.84%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGERSLKERVTV 372
            SGTMGNLI VGA C+RGDE+ILG KSHIF+YEG GASA MGV+YHT+ N EDG L++  I +A+RGDD HYPRS+LLCLENTQNLCGARAI   RM EMCAA R  G+KVHVDG R     V++
Sbjct:  210 SGTMGNLIAVGAHCRRGDELILGDKSHIFQYEGAGASALMGVSYHTVRNAEDGGLEVADIETAVRGDDPHYPRSSLLCLENTQNLCGARAIAPARMAEMCAAGRHAGLKVHVDGARLWNAAVSL 333          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A8K1FA57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA57_PYTOL)

HSP 1 Score: 140 bits (353), Expect = 3.050e-38
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGERSLKERVTV 372
            SGTMGNLI +GA C+RGDEIILG KSHIF YEG GASA+MGV++HTL N  +G+L +  + +A+R DDQHYPR+ L+ LENT N CG R + V  + E+ A  R+  +++H+DG R     V +
Sbjct:   42 SGTMGNLIAIGAHCRRGDEIILGNKSHIFMYEGGGASAYMGVSFHTLPNQANGTLRLDDLKNAVRDDDQHYPRTRLVALENTHNTCGGRVLSVDYVNEVAAFCRQQKLQLHIDGARLANASVAL 165          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A2D4C5R1_PYTIN (L-allo-threonine aldolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5R1_PYTIN)

HSP 1 Score: 138 bits (347), Expect = 3.080e-37
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGERSLKERVTV 372
            SGTMGNLI VG  C+RGDEIILG KSHIF YEG GASA+MGV +H++ N  DG+L +  +A+A+R DD HYPR+ L+ LENT N CG R + ++ + ++ A  R+ G+++HVDG R     V +
Sbjct:   54 SGTMGNLIAVGVHCRRGDEIILGDKSHIFMYEGAGASAYMGVGFHSVRNQSDGTLALEDLANAVRADDPHYPRTRLVALENTHNTCGGRVLPLEFLEQVEAFCRQRGLRLHVDGARLANASVAL 177          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A6G0XNI5_9STRA (Beta_elim_lyase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNI5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.210e-37
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTMGNLI VG  C RGDE+ILG KSH+F+YEG GASAF+GV+ HT+ N  DGSL +  I +A+R DD H+PRS L+ +ENT N CG R +  + ++ + A   R G+K+HVDG R
Sbjct:   62 SGTMGNLISVGVHCNRGDEVILGNKSHVFKYEGGGASAFLGVSMHTVPNQADGSLLLEDIEAAIREDDPHFPRSQLVVIENTHNTCGGRVVPTETVQSISALCERRGLKLHVDGAR 177          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A0P1AV90_PLAHL (L-allo-threonine aldolase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AV90_PLAHL)

HSP 1 Score: 130 bits (327), Expect = 7.970e-36
Identity = 60/116 (51.72%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTM NLI +G  C+RG+EII G K+HIF YEG GASA+MGV+ HT++N  DG+LDI  + +A+R DD HYPR++L+ +ENTQN CG R +  + +R +     +  +++HVDG R
Sbjct:   64 SGTMSNLIAIGTHCRRGEEIICGDKAHIFLYEGAGASAYMGVSLHTVENQRDGTLDIKDVQNAIRADDPHYPRTSLVTIENTQNTCGGRVLPQQFVRTLEQLCHKRNLRLHVDGAR 179          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A8K1FBA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBA4_PYTOL)

HSP 1 Score: 133 bits (334), Expect = 3.110e-35
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGERSLKERVTV 372
            SGTM NLI VGA C+RGDEIILG K+HI  YEG GASA+MGV++ T+ N  DG+L +  +  A+RGDD HYPRS L+ LENTQN CG R + V+   ++ A  +   +++H+DG R     V +
Sbjct:   63 SGTMANLIAVGAHCRRGDEIILGDKAHIVTYEGGGASAYMGVSFRTVPNQTDGTLRLEDLKDAIRGDDPHYPRSRLVALENTQNNCGGRVLSVEYTNQVAAFCKEHNLRLHIDGARLANASVAL 186          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A485LPZ3_9STRA (Aste57867_24183 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPZ3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.240e-34
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTMGNLI VG  C RGDE+ILG KSH+F+YEG G SA+MGV  HT+ N  +G++ +  I SA+RGDD HYPRS L+ +ENT N CG R +  + +  +        +K+HVDG R
Sbjct:   62 SGTMGNLIAVGVHCNRGDEVILGNKSHVFKYEGAGVSAYMGVGMHTVPNQTNGTMFVPDIQSAIRGDDPHYPRSRLVIVENTHNTCGGRVVPTETVASIADICDAHDLKLHVDGAR 177          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A5D6XWH6_9STRA (Beta_elim_lyase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWH6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.810e-34
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTM NLI +GA C RGDEII+G K+HIF YEG GASA++GV  HT+ N  DG+L +  I SA+R DD HYPR+ L+ +ENT N CG R + +  +RE+    R   +K+HVDG R
Sbjct:   64 SGTMSNLIALGAHCNRGDEIIVGDKAHIFMYEGAGASAYLGVGLHTVRNQADGTLALADIRSAVRADDPHYPRTRLVAIENTHNTCGGRVLPLAFVREVEGFCRDASLKLHVDGAR 179          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: A0A1V9ZG07_9STRA (L-allo-threonine aldolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG07_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.760e-34
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTM NLI VGA CQRGDEI+LG+KSHIF YEG G SA++GV  +T+    +GSL +  + SA+R DD HYPR+ L+ +ENT N CG R +  + +R++ +      +K+H+DG R
Sbjct:   62 SGTMSNLIAVGAHCQRGDEIVLGKKSHIFTYEGAGVSAYLGVGMNTVPTQPNGSLSVADVESAIRDDDPHYPRTTLVAVENTHNTCGGRVVPTEAIRDIASICASHNLKLHMDGAR 177          
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Match: H3G779_PHYRM (Beta_elim_lyase domain-containing protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3G779_PHYRM)

HSP 1 Score: 127 bits (318), Expect = 6.030e-33
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 SGTMGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDGSLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAARRGGIKVHVDGER 348
            SGTM NLI +G  CQRGDE+I G KSHIF YEG GASA+MGV+  TL N  DG++ ++ +A+A+R DD HYPR++L+ +ENT N CG R + +  +RE+    +   + +HVDG R
Sbjct:   56 SGTMSNLIAIGTHCQRGDEVICGNKSHIFTYEGAGASAYMGVSLATLPNQPDGTIKLSDMAAAVRADDIHYPRTSLVEIENTHNTCGGRVLPLSYIREVEQFCKEHNLSLHVDGAR 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12522.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2V5_9PHAE4.120e-5169.35Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
A0A8K1FA57_PYTOL3.050e-3854.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5R1_PYTIN3.080e-3753.23L-allo-threonine aldolase n=1 Tax=Pythium insidios... [more]
A0A6G0XNI5_9STRA5.210e-3756.03Beta_elim_lyase domain-containing protein n=1 Tax=... [more]
A0A0P1AV90_PLAHL7.970e-3651.72L-allo-threonine aldolase n=1 Tax=Plasmopara halst... [more]
A0A8K1FBA4_PYTOL3.110e-3551.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LPZ3_9STRA3.240e-3452.59Aste57867_24183 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6XWH6_9STRA4.810e-3454.31Beta_elim_lyase domain-containing protein n=1 Tax=... [more]
A0A1V9ZG07_9STRA6.760e-3450.86L-allo-threonine aldolase n=1 Tax=Achlya hypogyna ... [more]
H3G779_PHYRM6.030e-3351.72Beta_elim_lyase domain-containing protein n=22 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12522contigH-elongata_contig12522:4736..5793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue8.1e-42
Seed eggNOG ortholog2880.D7FWM2
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
EC4.1.2.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThreonine aldolase
Ec32 orthologEc-11_002460.1
Exons2
Model size375
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12522.1895.1prot_H-elongata_contig12522.1895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12522 4745..5793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.868062-UTR-H-elongata_contig12522:4735..47441622929739.868062-UTR-H-elongata_contig12522:4735..4744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12522 4736..4744 +
1691679139.346695-UTR-H-elongata_contig12522:4735..47441691679139.346695-UTR-H-elongata_contig12522:4735..4744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12522 4736..4744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.883013-CDS-H-elongata_contig12522:4744..49531622929739.883013-CDS-H-elongata_contig12522:4744..4953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12522 4745..4953 +
1691679139.3600109-CDS-H-elongata_contig12522:4744..49531691679139.3600109-CDS-H-elongata_contig12522:4744..4953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12522 4745..4953 +
1622929739.899824-CDS-H-elongata_contig12522:5636..57931622929739.899824-CDS-H-elongata_contig12522:5636..5793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12522 5637..5793 +
1691679139.3686361-CDS-H-elongata_contig12522:5636..57931691679139.3686361-CDS-H-elongata_contig12522:5636..5793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12522 5637..5793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12522.1895.1

>prot_H-elongata_contig12522.1895.1 ID=prot_H-elongata_contig12522.1895.1|Name=mRNA_H-elongata_contig12522.1895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MGNLIGVGAQCQRGDEIILGRKSHIFEYEGMGASAFMGVAYHTLDNLEDG
SLDITAIASALRGDDQHYPRSALLCLENTQNLCGARAIGVKRMREMCAAA
RRGGIKVHVDGERSLKERVTV*
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mRNA from alignment at H-elongata_contig12522:4736..5793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12522.1895.1 ID=mRNA_H-elongata_contig12522.1895.1|Name=mRNA_H-elongata_contig12522.1895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-elongata_contig12522:4736..5793+ (Himanthalia elongata Himel1 dioecious)
AGTGGTACGATGGGAAACCTGATCGGTGTTGGTGCGCAATGTCAACGAGG AGACGAGATAATCCTGGGAAGGAAGTCCCACATCTTCGAGTATGAGGGCA TGGGTGCAAGTGCCTTTATGGGGGTCGCGTACCACACGCTCGACAACCTC GAAGATGGGAGCCTCGATATCACCGCCATTGCAAGCGCTCTACGAGGAGA TGACCAACACTACCCACGGTGAGGCTTTCTTCGCAAAAAAAGGGATGAAG AGGGAAACCTGCGCGAAAAACGGAGGTTAATGCACGTGTTTCAGACATTT TTATTTTAAAACATATGAACTCATTCAAAGTCTCCGAATATCCACGCCTT CTTAGCACCGTGAGAGGTGCAGTCCAGCGGACCAACTATCGTCAGGTTGG AAGGTGGACAGTACTACCTTTGAGCACAATTTCGTCACATGTAATTATTC GTAATTTTGTGCTGACTTCACGCGAACAGAAACACAGGCCGTTCAACGCC GAAACTGAAAAACAACATAGGTAATGACGACGTTTCTACCAGAGTTATTG ATGTCATACAGGAGTTAGGTATGTGAGAGATGGTCAAATTGGGCTGTCGA CGGGGAAATCGACAGGCGAAATTGTCGCAATAGTTACCGTGACGTTTGGG GCGAAACTACGGCTGTAGGTACTTTCACTCGAAAATACGATATATATCAA ATCAAGAGCTAGAAAAAAGGAAACGGCGGAGACTGGGAGAAAATGTGCCG CCAGTTTCGGGGTTTCTTATTGTTTAGCGGGTGTTGCTTTGAAGGTTTAG AAGGGAAACGGCGTAATTGTTTTAGTTCCGTAGGCGATCGAGTCTTCCGC CGTTCTTGTTGACCCCCACCACCCATCCGCTGCCGCTTCGCGAGAATTCA GGTCCGCCCTTCTCTGTCTCGAGAACACGCAAAACCTGTGCGGAGCGCGA GCTATCGGCGTGAAGCGAATGAGAGAGATGTGCGCTGCTGCCCGGCGTGG GGGGATCAAGGTCCATGTCGACGGTGAGAGGTCCCTCAAAGAGAGGGTTA CCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig12522:4736..5793+

>mRNA_H-elongata_contig12522.1895.1 ID=mRNA_H-elongata_contig12522.1895.1|Name=mRNA_H-elongata_contig12522.1895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig12522:4736..5793+ (Himanthalia elongata Himel1 dioecious)
ATGGGAAACCTGATCGGTGTTGGTGCGCAATGTCAACGAGGAGACGAGAT
AATCCTGGGAAGGAAGTCCCACATCTTCGAGTATGAGGGCATGGGTGCAA
GTGCCTTTATGGGGGTCGCGTACCACACGCTCGACAACCTCGAAGATGGG
AGCCTCGATATCACCGCCATTGCAAGCGCTCTACGAGGAGATGACCAACA
CTACCCACGATGGGAAACCTGATCGGTGTTGGTGCGCAATGTCAACGAGG
AGACGAGATAATCCTGGGAAGGAAGTCCCACATCTTCGAGTATGAGGGCA
TGGGTGCAAGTGCCTTTATGGGGGTCGCGTACCACACGCTCGACAACCTC
GAAGATGGGAGCCTCGATATCACCGCCATTGCAAGCGCTCTACGAGGAGA
TGACCAACACTACCCACGGTCCGCCCTTCTCTGTCTCGAGAACACGCAAA
ACCTGTGCGGAGCGCGAGCTATCGGCGTGAAGCGAATGAGAGAGATGTGC
GCTGCTGCCCGGCGTGGGGGGATCAAGGTCCATGTCGACGGTGAGAGGTC
CCTCAAAGAGAGGGTTACCGTGTGAGTCCGCCCTTCTCTGTCTCGAGAAC
ACGCAAAACCTGTGCGGAGCGCGAGCTATCGGCGTGAAGCGAATGAGAGA
GATGTGCGCTGCTGCCCGGCGTGGGGGGATCAAGGTCCATGTCGACGGTG
AGAGGTCCCTCAAAGAGAGGGTTACCGTGTGA
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