mRNA_H-elongata_contig12495.1882.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: D8LI22_ECTSI (Importin subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI22_ECTSI) HSP 1 Score: 252 bits (643), Expect = 2.520e-76 Identity = 137/218 (62.84%), Postives = 165/218 (75.69%), Query Frame = 1
Query: 265 QRALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSSDE---EEDDN------------GHGGNGAWSHH-SNEPGGQH------LPSLGRGAHLTRPAWMN 852
+R LVKEAAWVASNVAAGR EHR AL+ QG+PAALT LLLSDQ DLQQEAA+GIWN+V+HD LL QAA+++++M + LVR SPPVVRCALSF++LVC+NVPGG R+VE +GGLEAIDDVHY+GQ DP+L+EAAGAIVD+FFG++GY+SSDE EE D GG+G S + + P GQ L LGRGAHLTRP+WMN
Sbjct: 358 RRVLVKEAAWVASNVAAGRREHREALVAQGSPAALTLLLLSDQLDLQQEAAHGIWNIVAHDSELLLQAAKDDRVMGAYVALVRAQSPPVVRCALSFLQLVCQNVPGGPRMVESAGGLEAIDDVHYSGQADPELQEAAGAIVDRFFGDDGYESSDEGGDEETDTETVVGGGDGFGFNFGGSGDTSQNGARGPPGQXXXXXQPLAPLGRGAHLTRPSWMN 575
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A7S2XV23_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV23_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.160e-25 Identity = 70/177 (39.55%), Postives = 100/177 (56.50%), Query Frame = 1
Query: 331 RAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSSDEEEDDNGHGGNGAWSHHSNEPGGQHLPS----LGRGAHLTRPAWM 849
R AL+Q G L LL SDQ D Q+EAA+G++N+ DG L + +++ ++ + L+R P VVRCALSF+ +V + P G +VE +GG+E IDD+HY+ TD ++ AG +VD+FFGE+ + D G Q P+ LGRG HLT+PAWM
Sbjct: 11 RRALVQAGVGPCLLHLLHSDQFDFQKEAAFGLYNLCC-DGVHLEEVMKSD-VLQIYLRLLRVPDNSVVRCALSFLTVVLTHYPQGPHVVERAGGIEVIDDIHYH-HTDVEIAAYAGHLVDEFFGEDYHGDLD-----------GPSPPFEPRQPQQEPPAFSLGLGRGKHLTQPAWM 173
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A7S2BA76_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BA76_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.610e-20 Identity = 75/197 (38.07%), Postives = 112/197 (56.85%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGA-RLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSSDEEEDDNGHGGNGAWSHHSNEPGGQHLPS--LGRGAHLTRPAWM 849
R L+KEA W SN+AAG P H ++ P LT LL + + D+Q+EA + + N++S D +A A N + A L+RT V+ C+L+ + ++ + P A +VE++GGLEAIDD+HY G D+RE A ++VD ++G+E Y+ + +D G G S+ G Q P LGRG + RPAWM
Sbjct: 118 RGLLKEAVWTMSNMAAG-PVHHRTMMANFLPDLLT-LLNTGKFDVQREALFAVRNLMS-DPACVAFALGNGVLPPCIA-LLRTHDHDVILCSLTVIGVILKTSPSTAPTIVEDAGGLEAIDDLHY-GDVSDDVRELAASLVDTYYGDE-YEPTQSGDD----GRQGQLMQFSDVRGPQAQPQGGLGRGRDINRPAWM 304
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A7S4L2U6_GUITH (Importin subunit alpha n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L2U6_GUITH) HSP 1 Score: 91.7 bits (226), Expect = 3.250e-17 Identity = 50/147 (34.01%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEE 708
+ L+KEA WV SN+AAG+ HRAA++++G A+L +L + D+++EAA+ +++++ HD E + + F L+R P P VV AL+ + + + GG RL EE+ G++A++ + Y + + ++ +VDK+FGE+
Sbjct: 339 KGLMKEATWVLSNIAAGKANHRAAMMEEGVHASLIVILKTSHFDIRKEAAFALFHLL-HDPAYTPTLFTPE-LATEFVGLLRAPDPQVVDMALTVAERILATMEGGPRLFEEADGIDALEQLIYANSSQAVVARSS-FLVDKYFGED 482
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A7S0HZ05_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZ05_9CRYP) HSP 1 Score: 90.9 bits (224), Expect = 5.210e-17 Identity = 47/124 (37.90%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHY 639
+AL+KEA+WV SNVAAG+P HRAA++++G L +L + D+++EAA+ +++++ HD Q N ++ + F L+R P P VV AL+ + + + GG RL EE+ G++A++ + Y
Sbjct: 321 KALMKEASWVLSNVAAGKPTHRAAMMEEGMQKTLFHILQTSHFDIRKEAAFALFHLL-HDPAY-TQTLFNRELATEFVGLLRAPDPQVVDMALTVAERILATMEGGPRLFEEADGIDALEQLIY 442
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: L1IB06_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IB06_GUITC) HSP 1 Score: 87.0 bits (214), Expect = 4.560e-16 Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQT-----------DPDLREAAGA---IVDKFFGEE 708
+ L+KEA WV SN+AAG+ HRAA++++G A+L +L + D+++EAA+ +++++ HD E + + F L+R P P VV AL+ + + + GG RL EE+ G++A++ + Y + + RE A VDK+FGE+
Sbjct: 165 KGLMKEATWVLSNIAAGKANHRAAMMEEGVHASLIVILKTSHFDIRKEAAFALFHLL-HDPAYTPTLFTPE-LATEFVGLLRAPDPQVVDMALTVAERILATMEGGPRLFEEADGIDALEQLIYANSSQAVVARSSFLGESPRREGGDADVCAVDKYFGED 323
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A7S0DM12_9EUKA (Importin subunit alpha n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM12_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 4.030e-13 Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPD--LREAAGAIVDKFFGEEGYDSSDEEE 735
R L KEA WV N+ AG EH +I+ G L + Q DL++EA + + NV +D L + + ++ L++ + + F++++ RLVEE+GG++A++ V QT PD L + AG IVDK++GE+ DE+E
Sbjct: 338 RGLKKEAIWVVGNILAGPKEHVEVVIKSGFLPVLLEIFQKGQFDLKREAIHALLNVAKYDEPL--EFMVKQGVIPPVLSLMKVDERDTIAACIQFIEIILARNKDAVRLVEEAGGIDALETV----QTHPDGSLWDRAGGIVDKYWGEDADYDDDEKE 489
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A8H4AKR9_GIGMA (ARM repeat-containing protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AKR9_GIGMA) HSP 1 Score: 77.4 bits (189), Expect = 1.720e-12 Identity = 44/153 (28.76%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 268 RALVKEAAWVASNVAAGR-PEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSS 723
R + KE+ WV SN+ A R PE + G L+++ D+++EAAY + N+ SH G + ++ ++ F +R+ ++R L +++L+ V G +L+E+ G++A++ V Q DP LR+ + ++DK+FGE+ ++++
Sbjct: 228 RPVKKESLWVMSNITASRRPEVLIKVFNAGFIPILSSIATHTNFDIRKEAAYSLLNIASH-GEEYMKPLPHQDLLPGFLVFIRSQDIDLIRLGLGYVELLLTQVQNGQQLLEQMQGIDALESV--TSQEDPSLRDTSTRLMDKYFGEDFFNTN 377
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A024TZR0_9STRA (Importin subunit alpha n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZR0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.440e-12 Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 229 LHFLRNLLPLKPQRALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSSDEEEDDNGHGGNGAWSHHSNEPGGQHLPSLGRGAHLTRPAW 846
L+ L+ LL L+ +V EAAWV SN+AA L++ L A D+++EAA+ + N+ Q + ++ + L+ P VV AL F++ V +VP G VE +GG+ A++ + T L A +V++F+GE S D GH ++ + P Q +GRGAH+TRPAW
Sbjct: 314 LYMLKRLLWLENDSHVVAEAAWVVSNLAARDAAVVELLVKHDFLPRLGACFRDGGYDIRKEAAFALTNIAITSTTYAEQIVALD-VIDGYVTLLSVPDLNVVGTALQFIEHVLRHVPRGVYTVESAGGIAALETIQDG--TSDFLATKAEQLVNEFYGE----SYDAPFSPPGHAPEATFNQPQSSP--QSTAGMGRGAHMTRPAW 510
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Match: A0A6G0XIU1_9STRA (Importin subunit alpha n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIU1_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.560e-11 Identity = 64/215 (29.77%), Postives = 101/215 (46.98%), Query Frame = 1
Query: 211 IPSPSHLHFLRNLLPLKPQRALVKEAAWVASNVAAGRPEHRAALIQQGTPAALTALLLSDQRDLQQEAAYGIWNVVSHDGGLLAQAARNEKIMSTFAELVRTPSPPVVRCALSFMKLVCENVPGGARLVEESGGLEAIDDVHYNGQTDPDLREAAGAIVDKFFGEEGYDSSDEEEDDNGHGGNGAWSHHSNEPGGQHLP---SLGRGAHLTRPAW 846
+ P L+ ++ LL V E+AWV SN+AA L+Q LT + ++++E A+ + N+ + + E ++ F L+ VV AL F++ V VP G LVE GG++A++ V +GQ+D L A ++++F+GE YDS + + H P Q P +GRGAH+TRPAW
Sbjct: 308 VAEPRFLYMIKRLLSADGDPHAVAESAWVVSNLAARDVAVVDLLLQYEFLPRLTQVFRDGSYEIRKETAFALTNIAV-TASYVTKVVEFE-VLDGFVSLLTVADTTVVANALQFIEQVLRQVPRGVYLVECHGGIDALESVQ-DGQSDQ-LSTKAEQLMNEFYGET-YDSPMSPPNS---------ADHKTPPAFQAGPPVGGMGRGAHMTRPAW 508 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12495.1882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12495.1882.1 >prot_H-elongata_contig12495.1882.1 ID=prot_H-elongata_contig12495.1882.1|Name=mRNA_H-elongata_contig12495.1882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp LALLILECEIAPGAMFGMRGVLVFASTAKRESGVSHSDAIMNTFWFCFYSback to top mRNA from alignment at H-elongata_contig12495:24..1581+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12495.1882.1 ID=mRNA_H-elongata_contig12495.1882.1|Name=mRNA_H-elongata_contig12495.1882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-elongata_contig12495:24..1581+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12495:24..1581+ >mRNA_H-elongata_contig12495.1882.1 ID=mRNA_H-elongata_contig12495.1882.1|Name=mRNA_H-elongata_contig12495.1882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig12495:24..1581+ (Himanthalia elongata Himel1 dioecious)back to top |