mRNA_H-elongata_contig123888.1797.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI) HSP 1 Score: 230 bits (587), Expect = 2.230e-67 Identity = 146/343 (42.57%), Postives = 191/343 (55.69%), Query Frame = 1
Query: 10 LVGCGDSSFCQLPCMCPSSSWRRK--------RPEGSDVVNAL--KISQVSCGTSVAVALVSP--------AVASRQSYGVVEWGTSMYGEKTSSAAKAGHENSGTKPCGRQNGLPPPLRHPVEIA-SML------SGPGVRSISCGAHFVVASVQTGGCITWGGGRD-HRALGRGGCGSCTSPTCINTGEPSTPP-SPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAA---------AACYKNSRQAGDNVSSPVSVHAV-----ACGRDHSAVLTKDGRLWTFGSGLYGQV 915
LVG GDSSFCQ+PC P +SW R+ P ++ V + KISQ++CG + +A V+ A+ + ++EWGT +YGE+ S+ + G + L HP ++A S L S P +R I+CGAHFVVAS++ GGCI+WGGGR+ RALGRG CG+C C N P+ PP S P WVA+PLG GG +V LAAGDDH + DG+AWAWGRGDCGQLG + P +C PM VQ P+ A+ A+ + A V S VH ACGRDHSA++T DGR+WTFGSGL+GQ+
Sbjct: 8 LVGVGDSSFCQIPC--PWASWSRQTADANSKSHPSRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLSTETSVPQQ-------GDERNHASFLNHPAQVALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQL 339
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.060e-59 Identity = 145/359 (40.39%), Postives = 186/359 (51.81%), Query Frame = 1
Query: 10 LVGCGDSSFCQLPCMCPSSSWRRK------RPEGS----DVVNA-LKISQVSCGTSVAVALVSP-------------AVASRQSYGVVEWGTSMYGEKTSSAAKAGHENSGTKPCGRQNGLPPPLRHPVEIA-SML------SGPGVRSISCGAHFVVASVQTGGCITWGGGRD-HRALGRGGCGSCTSPTCINTGEPSTPP-SPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPT-------------------AAAAACYKNSRQAGDNVSSP-----VSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
LVG GDSSFCQ+PC P +SW R+ + GS DV KISQ++CG + +A V+ A+ ++EWGT +YGE+ S+ + G + L HP +A S L S P +R I+CGAHFVVAS++ GGCI+WGGGR+ RALGRG CG+C C + P+ P S P N WVA+PLG GG +V LAAGDDH + DG AWAWGRGDCGQLG + P +C PM VQ P+ A A ++G + P V ACGRDHSA++T DGR+WTFGSGL+GQ+
Sbjct: 8 LVGVGDSSFCQIPC--PWASWSRQTADEKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQ-------GDERNQESFLNHPAPVAFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGS-PDGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQL 354
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0018AFE07C (cell wall anchor protein n=1 Tax=Hymenobacter jeongseonensis TaxID=2791027 RepID=UPI0018AFE07C) HSP 1 Score: 69.7 bits (169), Expect = 1.110e-9 Identity = 57/199 (28.64%), Postives = 81/199 (40.70%), Query Frame = 1
Query: 319 PVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
PV++ G G ++ G +A G WGG RD + LG G + T+P + E + A W +AAG H++ DG +AWG D GQLG + S S TP+ V PT+AA + +A G DH+ LT DGRL+ +G+ YGQ+
Sbjct: 68 PVQVRPPAPGTGWSQVAMGTSHTLALTTDGRIQAWGGNRDGQ-LGDGTASAHTTPVAVALPEAAA--------QAQWK------------QIAAGTSHSLALTTDGQLYAWGNNDEGQLGNGS---------SLDSPTPVAVSLPTSAANTTWAQ----------------IAAGNDHTLALTTDGRLFAWGNNQYGQL 220
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A8J9ZP77_BRALA (RCCD1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZP77_BRALA) HSP 1 Score: 69.3 bits (168), Expect = 1.170e-9 Identity = 57/204 (27.94%), Postives = 88/204 (43.14%), Query Frame = 1
Query: 346 GPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPV--------------SVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
G V+++ CG +A +G +WG G LG G +C +P I E G+ ++++AAG H+V A G+ + WG + GQLG LP S+ CT + P+ + A Q GDNV+ + + ++CG H+A LTK+G+L T+G G YGQ+
Sbjct: 162 GENVKAVCCGKEHSLALTVSGRVFSWGNG-SRGQLGHGTTEACNTPQVIEALE-----------------------GVTMVTIAAGGWHSVSVSACGDLYVWGWNEAGQLG---LPTSKHKTGPSDGCTTCTDKEPSVSDMA------QQGDNVAEVLVQATPTIVDLPTGQELSKISCGSRHTAALTKEGQLLTWGWGAYGQL 332
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A3Q1EBR4_9TELE (Probable E3 ubiquitin-protein ligase HERC4 n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1EBR4_9TELE) HSP 1 Score: 69.7 bits (169), Expect = 1.590e-9 Identity = 63/206 (30.58%), Postives = 87/206 (42.23%), Query Frame = 1
Query: 304 PPLRHPVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWG-GGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGC-DTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
PP P+E S + V +SCG V + G TWG R LG+ GS G P + Q L + ++ + AG + + V G ++WGR DCGQLG DT S TP VQ C + +VH V+CG+DH+A+LTK G ++TFGSG +GQ+
Sbjct: 110 PPTARPLEAFSNIQ---VSQVSCGIKHSVVLTRDGRVFTWGQNSRGQLGLGKKSSGS---------GSPQ-------------LVQTLSE--IPLVQVCAGGEQSFVLSVSGGLFSWGRNDCGQLGLGDTTDRS----------TPTSVQ--------CLNMKK----------TVH-VSCGKDHTAILTKHGSVFTFGSGRFGQL 259
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0009B4C859 (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B4C859) HSP 1 Score: 68.6 bits (166), Expect = 3.820e-9 Identity = 59/204 (28.92%), Postives = 87/204 (42.65%), Query Frame = 1
Query: 307 PLRHPVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWG-GGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
P P+E+ + V ++CG+ VA + G TWG R LG C S +SP + +F +A + ++ +AAG + + G + WGR DCGQLG + P V F +S ++H V+CG+DHSA+LTKDG ++TFGSG YGQ+
Sbjct: 108 PTPRPLEVFCKIP---VSQVACGSQHSVALTKNGQVYTWGLDSRGQLGLGNRRC-STSSPRHL------------QFLSA-----------IPLVQIAAGGEQSFALSVSGGVFGWGRNDCGQLG---------LGDETDRHIPTPVHF------------------LSMKKTIH-VSCGKDHSAILTKDGVVFTFGSGQYGQL 256
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A521Q7E9_9PROT (Fibronectin type-III domain-containing protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A521Q7E9_9PROT) HSP 1 Score: 67.0 bits (162), Expect = 1.140e-8 Identity = 63/202 (31.19%), Postives = 86/202 (42.57%), Query Frame = 1
Query: 340 LSGPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQ--PLGSGGL--EVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAA-ACYKNSRQAGDNVSSPV-----SVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
L+ P + +I+ G VA G WG + LG G S C N P +G W P G+ V ++A G HT+ +DG WAWGR D GQLG TL A+ + S T M+ A A + + QA + +PV S+ AV+ G HS L DG +W +G YGQ+
Sbjct: 443 LAPPAMTAIAAGFQHTVALKDDGTVWAWG----YNVLGTLGYASMD---CAN----------PVYGQFFWTCSDVPTQLTGITGSVAAIAGGYSHTLAVTSDGQVWAWGRNDTGQLG--TLAAN-----CNRSITQMLPSILQAQALDTVFDPATQACNTTPTPVNAIPGSIVAVSAGMRHSLALMSDGTVWAWGGNYYGQL 620
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0011EA47F1 (probable E3 ubiquitin-protein ligase HERC4 isoform X1 n=3 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA47F1) HSP 1 Score: 66.6 bits (161), Expect = 1.650e-8 Identity = 54/190 (28.42%), Postives = 77/190 (40.53%), Query Frame = 1
Query: 355 VRSISCGAHFVVASVQTGGCITWGGG-RDHRALG--RGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
V I+CG+ VA + G TWG R LG + GC S ++T + VI +AAG D + G ++WGR DCGQLG + TP+ V C + H ++CG+DH+A+LTK G ++TFGSG +GQ+
Sbjct: 126 VSQIACGSQHSVALTKGGQLYTWGQDCRGQLGLGTRKSGCRSPQHVRSLST--------------------------IPVIQVAAGGDQSFALSVSGGVFSWGRNDCGQLGLGDIKDRH---------TPVSVH--------CLNRKK-----------AHHISCGQDHTAILTKHGAVFTFGSGQHGQL 261
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A3P9J792_ORYLA (Uncharacterized protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9J792_ORYLA) HSP 1 Score: 66.2 bits (160), Expect = 1.930e-8 Identity = 40/114 (35.09%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 574 GLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
G+ ++ ++AG +H+ G+ + WGR DCGQLG E L H Y N ++ +V A ACG+DH+AVLT DG ++TFGSG YGQ+
Sbjct: 175 GMPLVQVSAGGEHSFALSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVH------------------YLNMKK---------TVFA-ACGKDHTAVLTMDGTVFTFGSGHYGQL 260
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A668S2H1_OREAU (Uncharacterized protein n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668S2H1_OREAU) HSP 1 Score: 64.7 bits (156), Expect = 1.940e-8 Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 577 LEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 915
+ V+ +AAG + + G ++WGR DCGQLG + + TP +V + N+ VS+ +CG+DH+A LTKDG ++TFGSG YGQ+
Sbjct: 129 IPVVQVAAGGEQSFALSVSGGVFSWGRNDCGQLG---------LGDTQDRHTPTLVHYL----------------NMKKTVSI---SCGKDHTAALTKDGAVFTFGSGQYGQL 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123888.1797.1 >prot_H-elongata_contig123888.1797.1 ID=prot_H-elongata_contig123888.1797.1|Name=mRNA_H-elongata_contig123888.1797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp MARLVGCGDSSFCQLPCMCPSSSWRRKRPEGSDVVNALKISQVSCGTSVAback to top mRNA from alignment at H-elongata_contig123888:907..1821+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123888.1797.1 ID=mRNA_H-elongata_contig123888.1797.1|Name=mRNA_H-elongata_contig123888.1797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig123888:907..1821+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123888:907..1821+ >mRNA_H-elongata_contig123888.1797.1 ID=mRNA_H-elongata_contig123888.1797.1|Name=mRNA_H-elongata_contig123888.1797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig123888:907..1821+ (Himanthalia elongata Himel1 dioecious)back to top |