mRNA_H-elongata_contig122680.1729.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.310e-38 Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
MPSTLSKL+D AASGSVERT+AVLS GSVDIDG D RTPLMAA+ GYLRVVRVLL+ GA V VAD+ G TALH+SI +HLAVS+ L+KAGA +E
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVE 99
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 134 bits (337), Expect = 7.260e-38 Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
MPSTLSKL+D AASGSVERT+AVLS GSV+IDG D RTPLMAA+ GYLRVVRVLL+ GA V VAD+ G TALH+SI +HLAVSK L+KAGA +E
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVE 99
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 130 bits (327), Expect = 4.060e-33 Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
MPSTLSKL+ ASGSVERT+AVLS GSVDIDG D RTPLMAA GYLRVVRVLL+ GA V VAD+ G TALH+SI +HLAVSK L+KAGA +E
Sbjct: 1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVE 99
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.670e-26 Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 37 ASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
A GSVERT+A+LS GSVDIDG DA RTPLM A+ GYLRV RVLL+ GA V VAD+ G TALH+S+ +HLAVSK LIKAGA++E
Sbjct: 5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVE 91
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.550e-25 Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query: 1 MPSTLSK-LFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
+PST S L+ A+SGSVERT+ +LSGG +ID CD+ T LM AA+KGYLR+VRVLL+ GA+V V+ D G TALH +I R+LAV+K LIKAGA++E
Sbjct: 13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVE 112
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.160e-20 Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
MPSTLSK ASGS++ TIA ID C D +TPLM A+ G RVVR LL+ GA+V VAD G TALH S+ HLAVSK LI+AGADLE
Sbjct: 1 MPSTLSK-----ASGSIDPTIATTG-----IDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLE 89
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 3.800e-20 Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
MPSTLSK ASGSVER +A + DID C D TPLM A+ G RVV+ LL+ GA+V VAD G TALH S+ RHLAVS +LI+AGADLE
Sbjct: 1 MPSTLSK-----ASGSVERAVA-----TTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLE 89
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14 Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAG 216
MPST S L++ A +GSVERT+ +LS G +ID C++ T LM AA+KGYLR+VRVLL+ GA+V V+ D G
Sbjct: 1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDG 72
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 7.160e-14 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 22 LFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
L + A G E A+L+ + DID D+ T LM A+ +GY +VR+LL GA V +AD G + LH+S+ H+AV+KTL++AGA LE
Sbjct: 18 LHEAADYGFFETAAALLASDAFDIDLGEDEGGWTALMIASHRGYSLIVRMLLSKGAQVSIADVHGDSGLHLSVLAGHMAVTKTLVEAGAPLE 109
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.490e-13 Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 136 AADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
A+ GYLRVVRVLL+ GA V AD+ G TALH+SI +HLAVSK L+KAGADLE
Sbjct: 38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLE 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122680.1729.1 >prot_H-elongata_contig122680.1729.1 ID=prot_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGback to top mRNA from alignment at H-elongata_contig122680:1..297- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122680.1729.1 ID=mRNA_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig122680:1..297- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122680:1..297- >mRNA_H-elongata_contig122680.1729.1 ID=mRNA_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig122680:1..297- (Himanthalia elongata Himel1 dioecious)back to top |