mRNA_H-elongata_contig122680.1729.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122680.1729.1
Unique NamemRNA_H-elongata_contig122680.1729.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.310e-38
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            MPSTLSKL+D AASGSVERT+AVLS GSVDIDG   D  RTPLMAA+  GYLRVVRVLL+ GA V VAD+ G TALH+SI  +HLAVS+ L+KAGA +E
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVE 99          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.260e-38
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            MPSTLSKL+D AASGSVERT+AVLS GSV+IDG   D  RTPLMAA+  GYLRVVRVLL+ GA V VAD+ G TALH+SI  +HLAVSK L+KAGA +E
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVE 99          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.060e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            MPSTLSKL+   ASGSVERT+AVLS GSVDIDG   D  RTPLMAA   GYLRVVRVLL+ GA V VAD+ G TALH+SI  +HLAVSK L+KAGA +E
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVE 99          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.670e-26
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   37 ASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            A GSVERT+A+LS GSVDIDG   DA RTPLM A+  GYLRV RVLL+ GA V VAD+ G TALH+S+  +HLAVSK LIKAGA++E
Sbjct:    5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVE 91          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.550e-25
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 MPSTLSK-LFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            +PST S  L+  A+SGSVERT+ +LSGG  +ID  CD+   T LM AA+KGYLR+VRVLL+ GA+V V+ D G TALH +I  R+LAV+K LIKAGA++E
Sbjct:   13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVE 112          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-20
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            MPSTLSK     ASGS++ TIA        ID  C D  +TPLM A+  G  RVVR LL+ GA+V VAD  G TALH S+   HLAVSK LI+AGADLE
Sbjct:    1 MPSTLSK-----ASGSIDPTIATTG-----IDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLE 89          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.800e-20
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            MPSTLSK     ASGSVER +A     + DID  C D   TPLM A+  G  RVV+ LL+ GA+V VAD  G TALH S+  RHLAVS +LI+AGADLE
Sbjct:    1 MPSTLSK-----ASGSVERAVA-----TTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLE 89          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAG 216
            MPST S L++ A +GSVERT+ +LS G  +ID  C++   T LM AA+KGYLR+VRVLL+ GA+V V+ D G
Sbjct:    1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDG 72          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.160e-14
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   22 LFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            L + A  G  E   A+L+  + DID   D+   T LM A+ +GY  +VR+LL  GA V +AD  G + LH+S+   H+AV+KTL++AGA LE
Sbjct:   18 LHEAADYGFFETAAALLASDAFDIDLGEDEGGWTALMIASHRGYSLIVRMLLSKGAQVSIADVHGDSGLHLSVLAGHMAVTKTLVEAGAPLE 109          
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.490e-13
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  136 AADKGYLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE 297
            A+  GYLRVVRVLL+ GA V  AD+ G TALH+SI  +HLAVSK L+KAGADLE
Sbjct:   38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLE 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122680.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C8_ECTSI1.310e-3871.72EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G449_ECTSI7.260e-3871.72EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE4.060e-3370.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE1.670e-2667.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE2.550e-2559.00Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LH66_ECTSI1.160e-2056.57EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHQ8_9PHAE3.800e-2057.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP44_ECTSI1.090e-1455.56EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSU4_ECTSI7.160e-1443.48EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JNS0_9PHAE2.490e-1368.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122680contigH-elongata_contig122680:1..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.6e-30
Seed eggNOG ortholog2880.D7G2C8
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionEsV-1-1
Ec32 orthologEc-03_003700.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.9395642-CDS-H-elongata_contig122680:0..2971622929721.9395642-CDS-H-elongata_contig122680:0..297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122680 1..297 -
1691679132.6200526-CDS-H-elongata_contig122680:0..2971691679132.6200526-CDS-H-elongata_contig122680:0..297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122680 1..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122680.1729.1prot_H-elongata_contig122680.1729.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122680 1..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122680.1729.1

>prot_H-elongata_contig122680.1729.1 ID=prot_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MPSTLSKLFDVAASGSVERTIAVLSGGSVDIDGWCDDAERTPLMAAADKG
YLRVVRVLLKHGANVLVADDAGITALHISICCRHLAVSKTLIKAGADLE
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mRNA from alignment at H-elongata_contig122680:1..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122680.1729.1 ID=mRNA_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig122680:1..297- (Himanthalia elongata Himel1 dioecious)
ATGCCGTCGACTCTGAGCAAACTGTTCGATGTCGCAGCCAGCGGATCCGT CGAGCGCACGATTGCTGTGCTTTCCGGAGGGTCGGTCGACATCGACGGAT GGTGTGATGATGCGGAACGGACTCCTCTTATGGCGGCCGCAGATAAGGGG TACTTGCGGGTGGTAAGAGTTCTGCTCAAACATGGCGCAAATGTCTTGGT AGCGGACGATGCCGGAATCACGGCTCTACATATTTCGATTTGTTGTAGAC ACCTGGCCGTCAGCAAGACGCTGATCAAGGCCGGTGCAGATCTCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig122680:1..297-

>mRNA_H-elongata_contig122680.1729.1 ID=mRNA_H-elongata_contig122680.1729.1|Name=mRNA_H-elongata_contig122680.1729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig122680:1..297- (Himanthalia elongata Himel1 dioecious)
ATGCCGTCGACTCTGAGCAAACTGTTCGATGTCGCAGCCAGCGGATCCGT
CGAGCGCACGATTGCTGTGCTTTCCGGAGGGTCGGTCGACATCGACGGAT
GGTGTGATGATGCGGAACGGACTCCTCTTATGGCGGCCGCAGATAAGGGG
TACTTGCGGGTGGTAAGAGTTCTGCTCAAACATGGCGCAAATGTCTTGGT
AGCGGACGATGCCGGAATCACGGCTCTACATATTTCGATTTGTTGTAGAC
ACCTGGCCGTCAGCAAGACGCTGATCAAGGCCGGTGCAGATCTCGAAATG
CCGTCGACTCTGAGCAAACTGTTCGATGTCGCAGCCAGCGGATCCGTCGA
GCGCACGATTGCTGTGCTTTCCGGAGGGTCGGTCGACATCGACGGATGGT
GTGATGATGCGGAACGGACTCCTCTTATGGCGGCCGCAGATAAGGGGTAC
TTGCGGGTGGTAAGAGTTCTGCTCAAACATGGCGCAAATGTCTTGGTAGC
GGACGATGCCGGAATCACGGCTCTACATATTTCGATTTGTTGTAGACACC
TGGCCGTCAGCAAGACGCTGATCAAGGCCGGTGCAGATCTCGAA
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