mRNA_H-elongata_contig122646.1726.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6H5L4W0_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W0_9PHAE) HSP 1 Score: 206 bits (524), Expect = 9.320e-66 Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K RY++FMQAY VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct: 17 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQLRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 139
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI) HSP 1 Score: 207 bits (527), Expect = 1.380e-59 Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K RY++FMQAY VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct: 1094 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 1216
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA) HSP 1 Score: 167 bits (424), Expect = 5.030e-49 Identity = 84/123 (68.29%), Postives = 95/123 (77.24%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A ERFDDV+ RLKSS +E SK A A FNE K R+ F + H+S+ L TIY+DLT SSKHPLGGNAYLSLD+ EEPY GG+K+N MPPMKRFRDMDQLSGGEKTVAALALLFA+H
Sbjct: 113 AFERFDDVTTRLKSSLAEYEISKDEARDAAASFNEVKSKRHELFTACFEHISKELKTIYRDLTKSSKHPLGGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIH 235
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK) HSP 1 Score: 164 bits (416), Expect = 2.420e-47 Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A E+FD+++ RLK SG+ F +K NA + L FN+ K+ R+ +FMQ + H+ + LN+ Y+DLT SSKHPLGG AYL+LD+ EEPYL GVKFNAMPPMKRFRDM+QLSGGE+TVA+LALLF++H
Sbjct: 159 AFEKFDNLTDRLKDSGKDFSNAKDNAQASALAFNKIKEKRHTAFMQCFNHIKDTLNSTYRDLTKSSKHPLGGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVH 281
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR) HSP 1 Score: 154 bits (389), Expect = 4.070e-45 Identity = 77/123 (62.60%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A E F ++ RLK S +E+SK+ +A A F K R F +A+ H+ E L TIY D+T SSKHPLGGNAYLSLD+ EEPY GG+KFNAMPPMKRFRDM+QLSGGEKTVAAL+LLFA+H
Sbjct: 1 ASEAFSTITDRLKGSSSDYEKSKEKSAKAAQAFQRVKAKRAKLFNEAFNHIDEALKTIYTDMTKSSKHPLGGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIH 123
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2RI11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI11_9STRA) HSP 1 Score: 162 bits (410), Expect = 7.720e-44 Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A ERF+DVS R K+S + F+Q++++A A FN+ K R+++FM + HV+ L TIY+DLT HPLGGNAYLSLD+ EEP+LGG+K+NAMPP+KRFRDM+QLSGGEKTVAALALLFA+H
Sbjct: 798 ATERFEDVSVRHKASTEEFDQARESARDAASLFNDVKQKRHDAFMACFNHVAHELQTIYQDLTKDPNHPLGGNAYLSLDDSEEPFLGGIKYNAMPPLKRFRDMEQLSGGEKTVAALALLFAIH 920
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6G0XYC9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC9_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.130e-43 Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A+E++D++ AR+ + E+ K NA A KF+E KD RY FM+A+ HVSE ++ YK+LT SSKHPLGG AYLSL+N EEPYL G+K+NAMPPMKRFR+M+QLSGGEKTVAALALLFA+H
Sbjct: 1043 ALEKYDEIQARIAKEEEELEKIKANATEACQKFDEVKDARYERFMEAFNHVSECIDETYKNLTKSSKHPLGGTAYLSLENSEEPYLHGMKYNAMPPMKRFREMEQLSGGEKTVAALALLFAIH 1165
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2SPG9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPG9_9STRA) HSP 1 Score: 154 bits (388), Expect = 5.140e-43 Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A ER+DDV+ RLK + ++ + L F + K +RY FM + HVS ++ +Y++LT SS+HPLGGNAYLSLDN EEPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct: 169 ARERYDDVAMRLKDTDAKLSLARVQSRKIELSFEKIKQSRYKKFMHMFEHVSNTIDKVYRELTKSSRHPLGGNAYLSLDNTEEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAVH 291
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA) HSP 1 Score: 147 bits (371), Expect = 8.930e-43 Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 106 EAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
E K R++ FM+ + HVSENL+ IYKDLT S+KHPLGGNAYLSLD+QEEP+ GGVKFNAMPPMKRFRDM+QLSGGEKTVAALALLFA+H
Sbjct: 1 EVKQKRHDLFMECFNHVSENLSEIYKDLTKSTKHPLGGNAYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 89
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A2R5GJT3_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJT3_9STRA) HSP 1 Score: 159 bits (402), Expect = 9.580e-43 Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
A ERF+DVS+RLK + + +++Q + L F K RY FM + HVS + IY++LT SS+HPLGGNAYLSLDN +EPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct: 1134 ANERFEDVSSRLKDTDEKLSRARQQSREVELNFETVKQERYEKFMHMFEHVSSTIEKIYRELTKSSRHPLGGNAYLSLDNTDEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAIH 1256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122646.1726.1 >prot_H-elongata_contig122646.1726.1 ID=prot_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp QAVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTback to top mRNA from alignment at H-elongata_contig122646:408..1432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122646.1726.1 ID=mRNA_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig122646:408..1432- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122646:408..1432- >mRNA_H-elongata_contig122646.1726.1 ID=mRNA_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig122646:408..1432- (Himanthalia elongata Himel1 dioecious)back to top |