mRNA_H-elongata_contig122646.1726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122646.1726.1
Unique NamemRNA_H-elongata_contig122646.1726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6H5L4W0_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 9.320e-66
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K  RY++FMQAY  VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct:   17 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQLRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 139          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.380e-59
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            AVERF DVS RLK+SGQ+FEQSKQNAAGAVLKFNE K  RY++FMQAY  VS+NLNTIYKDLT SSKHPLGGNA+LSLDN EEPYLGGVKFNAMPPMKRFRDM+QLSGGEKTVAAL LLFA+H
Sbjct: 1094 AVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 1216          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.030e-49
Identity = 84/123 (68.29%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A ERFDDV+ RLKSS   +E SK  A  A   FNE K  R+  F   + H+S+ L TIY+DLT SSKHPLGGNAYLSLD+ EEPY GG+K+N MPPMKRFRDMDQLSGGEKTVAALALLFA+H
Sbjct:  113 AFERFDDVTTRLKSSLAEYEISKDEARDAAASFNEVKSKRHELFTACFEHISKELKTIYRDLTKSSKHPLGGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIH 235          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK)

HSP 1 Score: 164 bits (416), Expect = 2.420e-47
Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A E+FD+++ RLK SG+ F  +K NA  + L FN+ K+ R+ +FMQ + H+ + LN+ Y+DLT SSKHPLGG AYL+LD+ EEPYL GVKFNAMPPMKRFRDM+QLSGGE+TVA+LALLF++H
Sbjct:  159 AFEKFDNLTDRLKDSGKDFSNAKDNAQASALAFNKIKEKRHTAFMQCFNHIKDTLNSTYRDLTKSSKHPLGGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVH 281          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR)

HSP 1 Score: 154 bits (389), Expect = 4.070e-45
Identity = 77/123 (62.60%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A E F  ++ RLK S   +E+SK+ +A A   F   K  R   F +A+ H+ E L TIY D+T SSKHPLGGNAYLSLD+ EEPY GG+KFNAMPPMKRFRDM+QLSGGEKTVAAL+LLFA+H
Sbjct:    1 ASEAFSTITDRLKGSSSDYEKSKEKSAKAAQAFQRVKAKRAKLFNEAFNHIDEALKTIYTDMTKSSKHPLGGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIH 123          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2RI11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI11_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.720e-44
Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A ERF+DVS R K+S + F+Q++++A  A   FN+ K  R+++FM  + HV+  L TIY+DLT    HPLGGNAYLSLD+ EEP+LGG+K+NAMPP+KRFRDM+QLSGGEKTVAALALLFA+H
Sbjct:  798 ATERFEDVSVRHKASTEEFDQARESARDAASLFNDVKQKRHDAFMACFNHVAHELQTIYQDLTKDPNHPLGGNAYLSLDDSEEPFLGGIKYNAMPPLKRFRDMEQLSGGEKTVAALALLFAIH 920          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A6G0XYC9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.130e-43
Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A+E++D++ AR+    +  E+ K NA  A  KF+E KD RY  FM+A+ HVSE ++  YK+LT SSKHPLGG AYLSL+N EEPYL G+K+NAMPPMKRFR+M+QLSGGEKTVAALALLFA+H
Sbjct: 1043 ALEKYDEIQARIAKEEEELEKIKANATEACQKFDEVKDARYERFMEAFNHVSECIDETYKNLTKSSKHPLGGTAYLSLENSEEPYLHGMKYNAMPPMKRFREMEQLSGGEKTVAALALLFAIH 1165          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2SPG9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPG9_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.140e-43
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A ER+DDV+ RLK +      ++  +    L F + K +RY  FM  + HVS  ++ +Y++LT SS+HPLGGNAYLSLDN EEPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct:  169 ARERYDDVAMRLKDTDAKLSLARVQSRKIELSFEKIKQSRYKKFMHMFEHVSNTIDKVYRELTKSSRHPLGGNAYLSLDNTEEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAVH 291          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.930e-43
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:  106 EAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            E K  R++ FM+ + HVSENL+ IYKDLT S+KHPLGGNAYLSLD+QEEP+ GGVKFNAMPPMKRFRDM+QLSGGEKTVAALALLFA+H
Sbjct:    1 EVKQKRHDLFMECFNHVSENLSEIYKDLTKSTKHPLGGNAYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 89          
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Match: A0A2R5GJT3_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJT3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.580e-43
Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    4 AVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYTHVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKRFRDMDQLSGGEKTVAALALLFALH 372
            A ERF+DVS+RLK + +   +++Q +    L F   K  RY  FM  + HVS  +  IY++LT SS+HPLGGNAYLSLDN +EPYLGG+K+NAMPP KRFRDMDQLSGGEKTVAALALLFA+H
Sbjct: 1134 ANERFEDVSSRLKDTDEKLSRARQQSREVELNFETVKQERYEKFMHMFEHVSSTIEKIYRELTKSSRHPLGGNAYLSLDNTDEPYLGGIKYNAMPPTKRFRDMDQLSGGEKTVAALALLFAIH 1256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122646.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4W0_9PHAE9.320e-6685.37SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LRP2_ECTSI1.380e-5985.37Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2AZM0_9STRA5.030e-4968.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YCQ0_HETAK2.420e-4762.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J9TE18_PHATR4.070e-4562.60Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S2RI11_9STRA7.720e-4462.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XYC9_9STRA5.130e-4363.41Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2SPG9_9STRA5.140e-4360.98Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2V1Q0_9STRA8.930e-4378.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R5GJT3_9STRA9.580e-4362.60Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122646contigH-elongata_contig122646:408..1432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue1.8e-52
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122646.1726.1prot_H-elongata_contig122646.1726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122646 408..1432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.6840174-CDS-H-elongata_contig122646:407..6021622929721.6840174-CDS-H-elongata_contig122646:407..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 408..602 -
1691679132.5066805-CDS-H-elongata_contig122646:407..6021691679132.5066805-CDS-H-elongata_contig122646:407..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 408..602 -
1622929721.7015555-CDS-H-elongata_contig122646:912..9731622929721.7015555-CDS-H-elongata_contig122646:912..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 913..973 -
1691679132.5169382-CDS-H-elongata_contig122646:912..9731691679132.5169382-CDS-H-elongata_contig122646:912..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 913..973 -
1622929721.7176278-CDS-H-elongata_contig122646:1310..14321622929721.7176278-CDS-H-elongata_contig122646:1310..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 1311..1432 -
1691679132.5251546-CDS-H-elongata_contig122646:1310..14321691679132.5251546-CDS-H-elongata_contig122646:1310..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122646 1311..1432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122646.1726.1

>prot_H-elongata_contig122646.1726.1 ID=prot_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QAVERFDDVSARLKSSGQSFEQSKQNAAGAVLKFNEAKDNRYNSFMQAYT
HVSENLNTIYKDLTLSSKHPLGGNAYLSLDNQEEPYLGGVKFNAMPPMKR
FRDMDQLSGGEKTVAALALLFALHR*
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mRNA from alignment at H-elongata_contig122646:408..1432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122646.1726.1 ID=mRNA_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig122646:408..1432- (Himanthalia elongata Himel1 dioecious)
CAGGCTGTGGAGCGGTTTGACGACGTGAGCGCCCGGCTGAAGAGCTCGGG GCAGAGCTTCGAGCAGTCGAAGCAAAACGCGGCCGGGGCGGTGCTCAAGT TTAACGAGGCCAAGGACAATAGGTACACAACTGTAGTCTAGCCGACTGCA GTTAGGTCGAAAAGGCGCCACGATGCTTGCAGGACGCTTGCCAACCGATG CCCATGAATCGCCGGTGAAAAAAAAAATGCTTTGCGGCACTCGGCGCGTT TTAAAGCGGCGCCGCTTCCCTTCCTCCTGCTCGCTCGTGGACTTATTTCT TCTTTCCCGTGTTGGAATAATCCCTCCTTTTTTTTTCCAGCCCTCTCCGA GTCGTGGAAGTTTTAAAATGAACTATTTTTGCCTTGTCGATCTTGGGGTA GTTGCCATCTTTGCTGCGTTCCGTAACGCTCTTCCAAAAAAACCCAAACG TGCTCGCAGGTACAACTCCTTCATGCAAGCCTACACCCACGTCTCAGAGA ATCTCAACACCATATACAAGGTAACGGAAGGATTCATGTTGACGTTTTTT TTAAATAAAAATAGTAGGTCTGTATCTATACTTAATACTAATGTTAGTTG TAACATCGGAACAGAGGGGTGACCTGAACTCTCCTACGACAGTAGATGGA ACGGAAACATTTGTCCGGTTTCCGTCAATCCACACCCCGTCGATACCCTG AACCCGCATGGCGCGAGCCCGATCGCTACGCAACGCGAACTGTGCTCGGG AGGGCGCTCACGCTCCGCCACCCCTTGCCCTCTTCCTCTCTCCAACCCTG CAACCCTGCCCTTGCCTGACACCTATATAGGACCTCACTCTCAGCAGTAA ACATCCCCTCGGTGGCAACGCCTACTTGAGCCTCGACAACCAGGAGGAGC CGTACCTTGGGGGCGTGAAATTCAACGCCATGCCCCCAATGAAGAGATTC CGTGACATGGATCAACTCTCGGGAGGGGAGAAGACCGTCGCGGCGCTTGC CCTGCTCTTCGCGCTCCACAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig122646:408..1432-

>mRNA_H-elongata_contig122646.1726.1 ID=mRNA_H-elongata_contig122646.1726.1|Name=mRNA_H-elongata_contig122646.1726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig122646:408..1432- (Himanthalia elongata Himel1 dioecious)
CAGGCTGTGGAGCGGTTTGACGACGTGAGCGCCCGGCTGAAGAGCTCGGG
GCAGAGCTTCGAGCAGTCGAAGCAAAACGCGGCCGGGGCGGTGCTCAAGT
TTAACGAGGCCAAGGACAATAGCAGGCTGTGGAGCGGTTTGACGACGTGA
GCGCCCGGCTGAAGAGCTCGGGGCAGAGCTTCGAGCAGTCGAAGCAAAAC
GCGGCCGGGGCGGTGCTCAAGTTTAACGAGGCCAAGGACAATAGGTACAA
CTCCTTCATGCAAGCCTACACCCACGTCTCAGAGAATCTCAACACCATAT
ACAAGGTACAACTCCTTCATGCAAGCCTACACCCACGTCTCAGAGAATCT
CAACACCATATACAAGGACCTCACTCTCAGCAGTAAACATCCCCTCGGTG
GCAACGCCTACTTGAGCCTCGACAACCAGGAGGAGCCGTACCTTGGGGGC
GTGAAATTCAACGCCATGCCCCCAATGAAGAGATTCCGTGACATGGATCA
ACTCTCGGGAGGGGAGAAGACCGTCGCGGCGCTTGCCCTGCTCTTCGCGC
TCCACAGGTAGGACCTCACTCTCAGCAGTAAACATCCCCTCGGTGGCAAC
GCCTACTTGAGCCTCGACAACCAGGAGGAGCCGTACCTTGGGGGCGTGAA
ATTCAACGCCATGCCCCCAATGAAGAGATTCCGTGACATGGATCAACTCT
CGGGAGGGGAGAAGACCGTCGCGGCGCTTGCCCTGCTCTTCGCGCTCCAC
AGGTAG
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