mRNA_H-elongata_contig122143.1696.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI) HSP 1 Score: 211 bits (536), Expect = 3.140e-61 Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 100 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S EREFYEALKKRSK
Sbjct: 651 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 769
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 211 bits (536), Expect = 2.470e-60 Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 100 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S EREFYEALKKRSK
Sbjct: 1028 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 1146
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL) HSP 1 Score: 139 bits (349), Expect = 3.540e-35 Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 1
Query: 106 RACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
RAC ++A RW +TGTPIQNSL D+ +LL FLR+EPWS WW++VIA+P++ GD +AL RLK +L PILLRRTK + D+ G+ IVELP K ++I +LQF+ EREFY+A+ RS+
Sbjct: 583 RACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFEQGDDQALVRLKVILTPILLRRTKHSRDAHGKNIVELPPKHIEIAKLQFTEEEREFYQAVYDRSR 699
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: H3GRS2_PHYRM (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS2_PHYRM) HSP 1 Score: 134 bits (338), Expect = 1.070e-33 Identity = 70/144 (48.61%), Postives = 100/144 (69.44%), Query Frame = 1
Query: 28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
L+TT + RV + S G +AC +A RW +TGTPIQN+LDD+ +LL FL+++PWS WW++VI PY+DGD + AL RLK +L P+LLRRTK + D +G+ IV+LP K V++V+L+FSP ER FY+A+ +S+
Sbjct: 519 LTTTEWNRV-ILDEAHSIKNRATGYFKACSATKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPMLLRRTKHSRDKQGKMIVQLPPKHVELVKLEFSPDERAFYQAVYDKSR 661
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A662Y6B2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B2_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.070e-33 Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 1
Query: 97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
G +AC + A RW +TGTPIQNSL+D+ +LL FL+++PWS WW++VIA PY+DGD +AL RLK +LAP+LLRRTK + D +GR IV+LP K V +VRL+FS ER FY+A+
Sbjct: 563 GYFKACSTLRATHRWCLTGTPIQNSLEDLFSLLCFLQYQPWSRVAWWKRVIAKPYEDGDDADALGRLKLILAPVLLRRTKHSRDKQGRRIVQLPPKRVDLVRLEFSADERAFYQAV 678
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6A3Z681_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z681_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.460e-33 Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
G + C ++A RW +TGTPIQN+LDD+ ALL FL+++PWS WW++VI PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +VRL+FSP ER FY+A+ +S+
Sbjct: 570 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFALLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVLLTPILLRRTKHSRDKQGKMIVQLPPKHVDLVRLEFSPDERAFYQAVYDKSR 690
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: G5AJ99_PHYSP (RanBP-type and C3HC4-type zinc finger-containing protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AJ99_PHYSP) HSP 1 Score: 132 bits (333), Expect = 4.840e-33 Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
G + C ++A RW +TGTPIQN+LDD+ +LL FL+++PWS WW++VI PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +V+L+FSP ER FY+A+ +S+
Sbjct: 542 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKHSRDKQGKMIVQLPPKHVDLVKLEFSPDERAFYQAVYDKSR 662
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D0NCW0_PHYIT (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCW0_PHYIT) HSP 1 Score: 132 bits (331), Expect = 9.330e-33 Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
L+TT + RV + S G ++C + A RW +TGTPIQN+LDD+ +LL FL+++PWS WW++VI PY+DGD + AL RLK +L P+LLRRTK + D RG IV+LP K + +V+L+FSP ER FY+A+
Sbjct: 503 LTTTEWNRV-ILDEAHSIKNRSTGYFKSCSGLMATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPVLLRRTKHSRDKRGNMIVKLPPKHIDLVKLEFSPDERAFYQAV 640
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A3M6VF82_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF82_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.320e-32 Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query: 97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
G + C ++A RW +TGTPIQN+LDDV ALL FL ++PW WW++VI PY+DGD + AL RLK +L PILLRRTK++ D G IV LP K V +V+L+FSP ER FY+A+ +S+
Sbjct: 362 GYFKTCSALKATHRWCLTGTPIQNTLDDVFALLCFLEYQPWCRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKQSRDKLGNMIVHLPPKHVDLVKLEFSPDERTFYQAVYDKSR 482
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: W2PER9_PHYPN (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2PER9_PHYPN) HSP 1 Score: 130 bits (328), Expect = 2.380e-32 Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
L+TT + RV + S G ++C + A RW +TGTPIQN+LDD+ +LL FL+++PWS WW++VI PY+DGD + AL RLK +L PILLRRTK + D +G IV+LP K + +V+L+FSP ER FY+A+
Sbjct: 577 LTTTEWNRV-ILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAV 714 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122143.1696.1 >prot_H-elongata_contig122143.1696.1 ID=prot_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp FSPPPPPTDLSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTback to top mRNA from alignment at H-elongata_contig122143:642..1926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122143.1696.1 ID=mRNA_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig122143:642..1926- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122143:642..1926- >mRNA_H-elongata_contig122143.1696.1 ID=mRNA_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig122143:642..1926- (Himanthalia elongata Himel1 dioecious)back to top |