prot_H-elongata_contig122143.1696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig122143.1696.1
Unique Name	prot_H-elongata_contig122143.1696.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	152

Homology

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.140e-61
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0

Query:   34 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S  EREFYEALKKRSK
Sbjct:  651 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 769

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.470e-60
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0

Query:   34 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S  EREFYEALKKRSK
Sbjct: 1028 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 1146

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 139 bits (349), Expect = 3.540e-35
Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 0

Query:   36 RACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            RAC  ++A  RW +TGTPIQNSL D+ +LL FLR+EPWS   WW++VIA+P++ GD +AL RLK +L PILLRRTK + D+ G+ IVELP K ++I +LQF+  EREFY+A+  RS+
Sbjct:  583 RACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFEQGDDQALVRLKVILTPILLRRTKHSRDAHGKNIVELPPKHIEIAKLQFTEEEREFYQAVYDRSR 699

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: H3GRS2_PHYRM (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS2_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 1.070e-33
Identity = 70/144 (48.61%), Postives = 100/144 (69.44%), Query Frame = 0

Query:   10 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            L+TT + RV +     S      G  +AC   +A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L P+LLRRTK + D +G+ IV+LP K V++V+L+FSP ER FY+A+  +S+
Sbjct:  519 LTTTEWNRV-ILDEAHSIKNRATGYFKACSATKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPMLLRRTKHSRDKQGKMIVQLPPKHVELVKLEFSPDERAFYQAVYDKSR 661

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A662Y6B2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.070e-33
Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 0

Query:   33 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 147
            G  +AC  + A  RW +TGTPIQNSL+D+ +LL FL+++PWS   WW++VIA PY+DGD  +AL RLK +LAP+LLRRTK + D +GR IV+LP K V +VRL+FS  ER FY+A+
Sbjct:  563 GYFKACSTLRATHRWCLTGTPIQNSLEDLFSLLCFLQYQPWSRVAWWKRVIAKPYEDGDDADALGRLKLILAPVLLRRTKHSRDKQGRRIVQLPPKRVDLVRLEFSADERAFYQAV 678

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6A3Z681_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z681_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.460e-33
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 0

Query:   33 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            G  + C  ++A  RW +TGTPIQN+LDD+ ALL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +VRL+FSP ER FY+A+  +S+
Sbjct:  570 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFALLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVLLTPILLRRTKHSRDKQGKMIVQLPPKHVDLVRLEFSPDERAFYQAVYDKSR 690

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: G5AJ99_PHYSP (RanBP-type and C3HC4-type zinc finger-containing protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AJ99_PHYSP)

HSP 1 Score: 132 bits (333), Expect = 4.840e-33
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 0

Query:   33 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            G  + C  ++A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +V+L+FSP ER FY+A+  +S+
Sbjct:  542 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKHSRDKQGKMIVQLPPKHVDLVKLEFSPDERAFYQAVYDKSR 662

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D0NCW0_PHYIT (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCW0_PHYIT)

HSP 1 Score: 132 bits (331), Expect = 9.330e-33
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 0

Query:   10 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 147
            L+TT + RV +     S      G  ++C  + A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L P+LLRRTK + D RG  IV+LP K + +V+L+FSP ER FY+A+
Sbjct:  503 LTTTEWNRV-ILDEAHSIKNRSTGYFKSCSGLMATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPVLLRRTKHSRDKRGNMIVKLPPKHIDLVKLEFSPDERAFYQAV 640

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A3M6VF82_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF82_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.320e-32
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 0

Query:   33 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 152
            G  + C  ++A  RW +TGTPIQN+LDDV ALL FL ++PW    WW++VI  PY+DGD + AL RLK +L PILLRRTK++ D  G  IV LP K V +V+L+FSP ER FY+A+  +S+
Sbjct:  362 GYFKTCSALKATHRWCLTGTPIQNTLDDVFALLCFLEYQPWCRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKQSRDKLGNMIVHLPPKHVDLVKLEFSPDERTFYQAVYDKSR 482

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BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: W2PER9_PHYPN (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2PER9_PHYPN)

HSP 1 Score: 130 bits (328), Expect = 2.380e-32
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 0

Query:   10 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 147
            L+TT + RV +     S      G  ++C  + A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G  IV+LP K + +V+L+FSP ER FY+A+
Sbjct:  577 LTTTEWNRV-ILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAV 714

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot

BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJC4_ECTSI	3.140e-61	89.92	DNA repair helicase rad5,16, putative n=1 Tax=Ecto...	[more]
A0A6H5KHD4_9PHAE	2.470e-60	89.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A8K1CQ45_PYTOL	3.540e-35	57.26	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
H3GRS2_PHYRM	1.070e-33	48.61	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
A0A662Y6B2_9STRA	1.070e-33	56.90	Uncharacterized protein n=1 Tax=Nothophytophthora ...	[more]
A0A6A3Z681_9STRA	1.460e-33	54.55	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
G5AJ99_PHYSP	4.840e-33	52.89	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
D0NCW0_PHYIT	9.330e-33	48.92	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
A0A3M6VF82_9STRA	2.320e-32	53.72	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
W2PER9_PHYPN	2.380e-32	48.92	RanBP-type and C3HC4-type zinc finger-containing p...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..152
None	No IPR available	PANTHER	PTHR45626:SF22	DNA REPAIR PROTEIN RAD5	coord: 34..152
None	No IPR available	PANTHER	PTHR45626	FAMILY NOT NAMED	coord: 34..152
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 32..127 e-value: 1.4E-16 score: 62.1
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 36..148 e-value: 2.9E-28 score: 98.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 31..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig122143	contig	H-elongata_contig122143:642..1926 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig122143.1696.1	mRNA_H-elongata_contig122143.1696.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig122143 642..1926 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig122143.1696.1 ID=prot_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
FSPPPPPTDLSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVT
GTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKT
VLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKR
SK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038718	SNF2-like_sf
IPR000330	SNF2_N
IPR027417	P-loop_NTPase