mRNA_H-elongata_contig122143.1696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122143.1696.1
Unique NamemRNA_H-elongata_contig122143.1696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.140e-61
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 1
Query:  100 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S  EREFYEALKKRSK
Sbjct:  651 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 769          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.470e-60
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 1
Query:  100 QSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            QSRACL +EADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWRKVI+DPYKDGD EALRRLKTVLAPILLRRTK TLDSRGRPIVELP K V+IVRLQ S  EREFYEALKKRSK
Sbjct: 1028 QSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYKDGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 1146          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 139 bits (349), Expect = 3.540e-35
Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  106 RACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            RAC  ++A  RW +TGTPIQNSL D+ +LL FLR+EPWS   WW++VIA+P++ GD +AL RLK +L PILLRRTK + D+ G+ IVELP K ++I +LQF+  EREFY+A+  RS+
Sbjct:  583 RACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFEQGDDQALVRLKVILTPILLRRTKHSRDAHGKNIVELPPKHIEIAKLQFTEEEREFYQAVYDRSR 699          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: H3GRS2_PHYRM (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS2_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 1.070e-33
Identity = 70/144 (48.61%), Postives = 100/144 (69.44%), Query Frame = 1
Query:   28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            L+TT + RV +     S      G  +AC   +A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L P+LLRRTK + D +G+ IV+LP K V++V+L+FSP ER FY+A+  +S+
Sbjct:  519 LTTTEWNRV-ILDEAHSIKNRATGYFKACSATKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPMLLRRTKHSRDKQGKMIVQLPPKHVELVKLEFSPDERAFYQAVYDKSR 661          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A662Y6B2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.070e-33
Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
            G  +AC  + A  RW +TGTPIQNSL+D+ +LL FL+++PWS   WW++VIA PY+DGD  +AL RLK +LAP+LLRRTK + D +GR IV+LP K V +VRL+FS  ER FY+A+
Sbjct:  563 GYFKACSTLRATHRWCLTGTPIQNSLEDLFSLLCFLQYQPWSRVAWWKRVIAKPYEDGDDADALGRLKLILAPVLLRRTKHSRDKQGRRIVQLPPKRVDLVRLEFSADERAFYQAV 678          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A6A3Z681_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z681_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.460e-33
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            G  + C  ++A  RW +TGTPIQN+LDD+ ALL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +VRL+FSP ER FY+A+  +S+
Sbjct:  570 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFALLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVLLTPILLRRTKHSRDKQGKMIVQLPPKHVDLVRLEFSPDERAFYQAVYDKSR 690          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: G5AJ99_PHYSP (RanBP-type and C3HC4-type zinc finger-containing protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AJ99_PHYSP)

HSP 1 Score: 132 bits (333), Expect = 4.840e-33
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            G  + C  ++A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G+ IV+LP K V +V+L+FSP ER FY+A+  +S+
Sbjct:  542 GYFKTCSAMKATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKHSRDKQGKMIVQLPPKHVDLVKLEFSPDERAFYQAVYDKSR 662          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: D0NCW0_PHYIT (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCW0_PHYIT)

HSP 1 Score: 132 bits (331), Expect = 9.330e-33
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
            L+TT + RV +     S      G  ++C  + A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L P+LLRRTK + D RG  IV+LP K + +V+L+FSP ER FY+A+
Sbjct:  503 LTTTEWNRV-ILDEAHSIKNRSTGYFKSCSGLMATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPVLLRRTKHSRDKRGNMIVKLPPKHIDLVKLEFSPDERAFYQAV 640          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: A0A3M6VF82_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF82_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.320e-32
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   97 GQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKRSK 456
            G  + C  ++A  RW +TGTPIQN+LDDV ALL FL ++PW    WW++VI  PY+DGD + AL RLK +L PILLRRTK++ D  G  IV LP K V +V+L+FSP ER FY+A+  +S+
Sbjct:  362 GYFKTCSALKATHRWCLTGTPIQNTLDDVFALLCFLEYQPWCRVAWWKRVITKPYEDGDDVNALGRLKVILTPILLRRTKQSRDKLGNMIVHLPPKHVDLVKLEFSPDERTFYQAVYDKSR 482          
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Match: W2PER9_PHYPN (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2PER9_PHYPN)

HSP 1 Score: 130 bits (328), Expect = 2.380e-32
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   28 LSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGD-LEALRRLKTVLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEAL 441
            L+TT + RV +     S      G  ++C  + A  RW +TGTPIQN+LDD+ +LL FL+++PWS   WW++VI  PY+DGD + AL RLK +L PILLRRTK + D +G  IV+LP K + +V+L+FSP ER FY+A+
Sbjct:  577 LTTTEWNRV-ILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPYEDGDDVNALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAV 714          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122143.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC4_ECTSI3.140e-6189.92DNA repair helicase rad5,16, putative n=1 Tax=Ecto... [more]
A0A6H5KHD4_9PHAE2.470e-6089.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CQ45_PYTOL3.540e-3557.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GRS2_PHYRM1.070e-3348.61RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A662Y6B2_9STRA1.070e-3356.90Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A3Z681_9STRA1.460e-3354.55RanBP-type and C3HC4-type zinc finger-containing p... [more]
G5AJ99_PHYSP4.840e-3352.89RanBP-type and C3HC4-type zinc finger-containing p... [more]
D0NCW0_PHYIT9.330e-3348.92RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A3M6VF82_9STRA2.320e-3253.72Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
W2PER9_PHYPN2.380e-3248.92RanBP-type and C3HC4-type zinc finger-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122143contigH-elongata_contig122143:642..1926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D7FJC4
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size456
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122143.1696.1prot_H-elongata_contig122143.1696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122143 642..1926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.1120415-CDS-H-elongata_contig122143:641..7641622929719.1120415-CDS-H-elongata_contig122143:641..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 642..764 -
1691679131.3486152-CDS-H-elongata_contig122143:641..7641691679131.3486152-CDS-H-elongata_contig122143:641..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 642..764 -
1622929719.127684-CDS-H-elongata_contig122143:1353..14221622929719.127684-CDS-H-elongata_contig122143:1353..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 1354..1422 -
1691679131.3622181-CDS-H-elongata_contig122143:1353..14221691679131.3622181-CDS-H-elongata_contig122143:1353..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 1354..1422 -
1622929719.143791-CDS-H-elongata_contig122143:1662..19261622929719.143791-CDS-H-elongata_contig122143:1662..1926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 1663..1926 -
1691679131.3762078-CDS-H-elongata_contig122143:1662..19261691679131.3762078-CDS-H-elongata_contig122143:1662..1926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122143 1663..1926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122143.1696.1

>prot_H-elongata_contig122143.1696.1 ID=prot_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
FSPPPPPTDLSTTMYTRVYVFIRVSSNLFFGDGQSRACLFVEADQRWAVT
GTPIQNSLDDVAALLAFLRHEPWSDRGWWRKVIADPYKDGDLEALRRLKT
VLAPILLRRTKKTLDSRGRPIVELPSKEVKIVRLQFSPVEREFYEALKKR
SK
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mRNA from alignment at H-elongata_contig122143:642..1926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122143.1696.1 ID=mRNA_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig122143:642..1926- (Himanthalia elongata Himel1 dioecious)
TTCTCTCCTCCCCCCCCTCCCACCGATCTATCTACAACTATGTACACACG TGTGTATGTATTTATACGTGTATCGTCGAACTTGTTTTTCGGGGACGGAC AGTCTCGGGCGTGTCTGTTTGTGGAAGCGGACCAACGGTGGGCCGTCACG GGGACCCCGATTCAGAACAGCCTGGACGACGTGGCGGCGCTCCTCGCCTT CTTGCGACACGAGCCCTGGAGTGATCGCGGCTGGTGGCGGAAGGTTATCG CTGATCCCTACAAGGTGCTCTGTTCGCGAGGCTGTGACCCTAGAGGAAAT GGCAACCGCACCGCGGTGGGGGGCCCAAAGATTTCGAGGGAGGCGGAGGG ATCACGGAGTTTAGGGGGAGGGGGTTATTGGGGAGTGTGTAAAATGCTTT TCTCTTTTTTTTCTTTTTTTTTCTTTCAGCAAATTACGTGTTAGTGTTTC GCCTCAATAACGCCGACATCATTAACTTGTTACCCGTGTAAAATTTCTCG TCAGGACGGTGACTTGGAAGCGCTTCGTCGGCTCAAGACCGTGCTCGCTC CGATCCTGCTGCGGAGGACAAAGGTAAGAGGTATCGCCTAAAAAAGGGAA ATAATAGAGAGAAGCAAGGACTCGGGTAGGACGGGGACAGGGGAAAATTA TTTTCCCTGTTCAGCTGACCACGAGCAGAAAGGTAACGAAATCCGGTCGA AATGTGATGACCAACAACAACAACATGCGAAGCACCATCATAATACAATA CCTGATTTATGTATGTATGTATATATTAGTTTGAGGAGGAGGGGGGAGGC GTTATCCAGGGGGGGGCGTACTCCATTTTTGCATGCCTTTAACTGTTTGA CCGGGGGGGGGGGGGGTGCTCCACCCATTCCTATGGAACAGTGGCTCTCT TGATCAAACGTCAAAATGCCGTTATCGAGTTGCCGTTCCTGCCTTCAATA GCGTACGCGAGCGTGGCTCGTATCGTATCGAAGCTCGTTTTGAGCGTCTC CTCTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCGCACCTTCATCCCGCTG GCTTTGGCGATGGATGTATATTTCCTTTTTTGTCGTTTTTGTTGGTCGGG GGGTGATGTGACGTAACGTAACGTAATGTCCCCGTCATTTTTTATAACGA ACGAGAGAAAAGAAAACCCTGGACTCCCGTGGGAGGCCGATCGTGGAGCT TCCCTCGAAGGAGGTGAAGATAGTCCGCCTGCAATTTTCGCCGGTGGAGA GGGAATTCTACGAGGCGCTCAAAAAGCGCTCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig122143:642..1926-

>mRNA_H-elongata_contig122143.1696.1 ID=mRNA_H-elongata_contig122143.1696.1|Name=mRNA_H-elongata_contig122143.1696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig122143:642..1926- (Himanthalia elongata Himel1 dioecious)
TTCTCTCCTCCCCCCCCTCCCACCGATCTATCTACAACTATGTACACACG
TGTGTATGTATTTATACGTGTATCGTCGAACTTGTTTTTCGGGGACGGAC
AGTCTCGGGCGTGTCTGTTTGTGGAAGCGGACCAACGGTGGGCCGTCACG
GGGACCCCGATTCAGAACAGCCTGGACGACGTGGCGGCGCTCCTCGCCTT
CTTGCGACACGAGCCCTGGAGTGATCGCGGCTGGTGGCGGAAGGTTATCG
CTGATCCCTACAAGTTCTCTCCTCCCCCCCCTCCCACCGATCTATCTACA
ACTATGTACACACGTGTGTATGTATTTATACGTGTATCGTCGAACTTGTT
TTTCGGGGACGGACAGTCTCGGGCGTGTCTGTTTGTGGAAGCGGACCAAC
GGTGGGCCGTCACGGGGACCCCGATTCAGAACAGCCTGGACGACGTGGCG
GCGCTCCTCGCCTTCTTGCGACACGAGCCCTGGAGTGATCGCGGCTGGTG
GCGGAAGGTTATCGCTGATCCCTACAAGGACGGTGACTTGGAAGCGCTTC
GTCGGCTCAAGACCGTGCTCGCTCCGATCCTGCTGCGGAGGACAAAGGAC
GGTGACTTGGAAGCGCTTCGTCGGCTCAAGACCGTGCTCGCTCCGATCCT
GCTGCGGAGGACAAAGAAAACCCTGGACTCCCGTGGGAGGCCGATCGTGG
AGCTTCCCTCGAAGGAGGTGAAGATAGTCCGCCTGCAATTTTCGCCGGTG
GAGAGGGAATTCTACGAGGCGCTCAAAAAGCGCTCGAAGAAAACCCTGGA
CTCCCGTGGGAGGCCGATCGTGGAGCTTCCCTCGAAGGAGGTGAAGATAG
TCCGCCTGCAATTTTCGCCGGTGGAGAGGGAATTCTACGAGGCGCTCAAA
AAGCGCTCGAAG
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