mRNA_H-elongata_contig122071.1687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122071.1687.1
Unique NamemRNA_H-elongata_contig122071.1687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122071.1687.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.010e-20
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 VGQEMSVSICVPGVLKDEADIQRAWGVEPRGESVSARERLRRFYYVYNRDKV 156
            VG+EM VSICVPGVLKD+AD+QR WGVEPRG  VSA+ERLRRFYYV+NR KV
Sbjct:  257 VGEEMCVSICVPGVLKDKADLQRGWGVEPRGSDVSAKERLRRFYYVHNRAKV 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122071.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP69_ECTSI2.010e-2080.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122071contigH-elongata_contig122071:356..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
KEGG koko:K14773
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4772925-UTR-H-elongata_contig122071:355..3671622929718.4772925-UTR-H-elongata_contig122071:355..367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122071 356..367 +
1691679131.088885-UTR-H-elongata_contig122071:355..3671691679131.088885-UTR-H-elongata_contig122071:355..367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122071 356..367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4926584-CDS-H-elongata_contig122071:367..5171622929718.4926584-CDS-H-elongata_contig122071:367..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122071 368..517 +
1691679131.1000009-CDS-H-elongata_contig122071:367..5171691679131.1000009-CDS-H-elongata_contig122071:367..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122071 368..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122071.1687.1prot_H-elongata_contig122071.1687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122071 368..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122071.1687.1

>prot_H-elongata_contig122071.1687.1 ID=prot_H-elongata_contig122071.1687.1|Name=mRNA_H-elongata_contig122071.1687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MSVSICVPGVLKDEADIQRAWGVEPRGESVSARERLRRFYYVYNRDKVC*
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mRNA from alignment at H-elongata_contig122071:356..517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122071.1687.1 ID=mRNA_H-elongata_contig122071.1687.1|Name=mRNA_H-elongata_contig122071.1687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig122071:356..517+ (Himanthalia elongata Himel1 dioecious)
GTCGGGCAGGAGATGTCGGTGTCCATTTGCGTCCCCGGAGTTCTTAAGGA
CGAGGCGGATATACAGAGGGCTTGGGGGGTGGAGCCTCGGGGAGAGAGCG
TCTCGGCAAGAGAACGATTACGCCGTTTCTATTACGTCTACAACAGAGAC
AAGGTGTGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig122071:356..517+

>mRNA_H-elongata_contig122071.1687.1 ID=mRNA_H-elongata_contig122071.1687.1|Name=mRNA_H-elongata_contig122071.1687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig122071:356..517+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGTGTCCATTTGCGTCCCCGGAGTTCTTAAGGACGAGGCGGATAT
ACAGAGGGCTTGGGGGGTGGAGCCTCGGGGAGAGAGCGTCTCGGCAAGAG
AACGATTACGCCGTTTCTATTACGTCTACAACAGAGACAAGGTGTGCTAG
ATGTCGGTGTCCATTTGCGTCCCCGGAGTTCTTAAGGACGAGGCGGATAT
ACAGAGGGCTTGGGGGGTGGAGCCTCGGGGAGAGAGCGTCTCGGCAAGAG
AACGATTACGCCGTTTCTATTACGTCTACAACAGAGACAAGGTGTGCTAG
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