mRNA_H-elongata_contig122059.1686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122059.1686.1
Unique NamemRNA_H-elongata_contig122059.1686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122059.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122059contigH-elongata_contig122059:867..1522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog2880.D8LRN6
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4139977-CDS-H-elongata_contig122059:866..9931622929718.4139977-CDS-H-elongata_contig122059:866..993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 867..993 -
1691679131.0709028-CDS-H-elongata_contig122059:866..9931691679131.0709028-CDS-H-elongata_contig122059:866..993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 867..993 -
1622929718.4293177-CDS-H-elongata_contig122059:1376..15221622929718.4293177-CDS-H-elongata_contig122059:1376..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 1377..1522 -
1691679131.079759-CDS-H-elongata_contig122059:1376..15221691679131.079759-CDS-H-elongata_contig122059:1376..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 1377..1522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122059.1686.1prot_H-elongata_contig122059.1686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122059 867..1522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122059.1686.1

>prot_H-elongata_contig122059.1686.1 ID=prot_H-elongata_contig122059.1686.1|Name=mRNA_H-elongata_contig122059.1686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
PGLVGGSELFSAPPQPQLPTAEPAVAQVEGGDGDIGVVSFVVGQRATIKT
TGQKKKLVVGLFKLSADVVRLVVPSKEPAAYLQAEARSSF*
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mRNA from alignment at H-elongata_contig122059:867..1522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122059.1686.1 ID=mRNA_H-elongata_contig122059.1686.1|Name=mRNA_H-elongata_contig122059.1686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=656bp|location=Sequence derived from alignment at H-elongata_contig122059:867..1522- (Himanthalia elongata Himel1 dioecious)
CCCGGTTTAGTAGGGGGGAGTGAACTGTTCTCAGCCCCGCCACAGCCGCA
GCTACCGACGGCAGAGCCAGCCGTGGCCCAAGTGGAAGGCGGGGATGGCG
ACATCGGTGTTGTGTCTTTCGTCGTCGGACAGCGGGCCACCATCAAGTGA
GACACAATGCGTCTCCCTTGACAAAACGTCCGGCCGCTTTTATCGCTTGA
CGCGGTAATCCTTGTGTGCCCTTCGCAGTCATAGGACAGACACATACATC
CCGCTCCGCCCCATCCCATCCCATCCCACCCTAACTTTTCAGCGGTTTTC
ATGTTTTACTCGTGCGATGGTGTCCAGACGTGTTGAATCTCCTTCATGTG
GACGAAACCGCCTGTCGGAATCTGTCATTCTGACCAATCGACCAATCAAA
TTTGATCTGCTTGTTGTTGCCGTTGATACTACTGTACTAATAATATTATC
ATTTCACTTAACACTTTTTGTTGCTGTGGTCCTTTCTGTTGGCTTTTCCC
GCCATGTCTCTCGCCTCTTTCTCTCTAAGAACCACTGGCCAAAAGAAGAA
GCTCGTCGTCGGACTTTTTAAGCTTTCAGCGGACGTGGTTCGCCTCGTCG
TGCCTTCTAAGGAACCGGCTGCCTACTTGCAGGCTGAGGCACGTAGCAGT
TTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig122059:867..1522-

>mRNA_H-elongata_contig122059.1686.1 ID=mRNA_H-elongata_contig122059.1686.1|Name=mRNA_H-elongata_contig122059.1686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig122059:867..1522- (Himanthalia elongata Himel1 dioecious)
CCCGGTTTAGTAGGGGGGAGTGAACTGTTCTCAGCCCCGCCACAGCCGCA
GCTACCGACGGCAGAGCCAGCCGTGGCCCAAGTGGAAGGCGGGGATGGCG
ACATCGGTGTTGTGTCTTTCGTCGTCGGACAGCGGGCCACCATCAACCCG
GTTTAGTAGGGGGGAGTGAACTGTTCTCAGCCCCGCCACAGCCGCAGCTA
CCGACGGCAGAGCCAGCCGTGGCCCAAGTGGAAGGCGGGGATGGCGACAT
CGGTGTTGTGTCTTTCGTCGTCGGACAGCGGGCCACCATCAAAACCACTG
GCCAAAAGAAGAAGCTCGTCGTCGGACTTTTTAAGCTTTCAGCGGACGTG
GTTCGCCTCGTCGTGCCTTCTAAGGAACCGGCTGCCTACTTGCAGGCTGA
GGCACGTAGCAGTTTCTAAAACCACTGGCCAAAAGAAGAAGCTCGTCGTC
GGACTTTTTAAGCTTTCAGCGGACGTGGTTCGCCTCGTCGTGCCTTCTAA
GGAACCGGCTGCCTACTTGCAGGCTGAGGCACGTAGCAGTTTCTAA
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