mRNA_H-elongata_contig1218.1667.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D7G0M0_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M0_ECTSI) HSP 1 Score: 208 bits (529), Expect = 6.160e-57 Identity = 154/514 (29.96%), Postives = 240/514 (46.69%), Query Frame = 1
Query: 4 GFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVIGMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSETLE-------RQGLTRNGSFARCHTHSSVGEEDIEN--KSINIIGSDNENGPRPLKSANPRPLDDEATGKRAAGILCMRENSVAEDPLKEQEMVSFMEGVATRNAASWKEKHD--------KPALVRHHDTPTSSSWFGANGLLASRLVQSLFCMELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIGMVLGWTGVGGMLFQFIAYPALCRTIGIKNLLSILGPAAVFIFLVIPDIQCSSWSKQHSYPVGVTLVVLVECCTSVYVTATMLALANAVPAHLRGQLSTLLAMGGGLGRMVGPATLCALLACSLNLSSAGSGHSGVGYFVDYHLTFVIESFVMLTVVLLGFYTFT 1494
GFY+G+++ ++T G LS Y WG D GRK V+II L S+++FS+ G+S +Y+ AI F+LGLT+ ++P R + E+ GP V+GM + G R+ ++IG +GG LAQPA+H+P+ FS TG+FA YPFLLPNLV ++++ ++ LV+ L ET + R + + R +S G +N S + I S N L K G R PL + + G A+ A++ ++ D L FG GLLA V+ + + + + GF VYPL+ L++ GG+GWN +IG V+ G+ + Q + +P + +GI + V FL +P + W + + V L+ C A L VP+ +RG+L L LGR GP A S++ S+ G +VDYHL F + ++ V ++ + T T
Sbjct: 32 GFYAGYVASSFTFGRFLSGYVWGSATDIIGRKPVIIIGLLSITIFSMIFGMSETYSMAITTRFILGLTNGIMPALRTSLSEVCGPEHVVLGMTYISGTRAISMVIGTGIGGLLAQPALHYPTVFSPTGLFAMYPFLLPNLVGAVLSVFALFLVIFYLPETKDYNKRRFSRDSVRTASTDPRRSPSASPGRSSRKNCGSSTSAINSTNPTESPSLHLQQXXXXXXGRQKKLPYGADIDRREKGEGAPLYQHLSQEPLAGDASFPASAAEKTTDGSKSSTCATDELSAAEQGDEEQGLFGPGGLLARPHVKLVLFLGCIIATLAIGFDEVYPLYALSTPSVGGLGWNTVQIGQVMVVAGLLLAVCQLVLFPPFIKMVGITYFQRLGCGVGVAAFLAVPGLTSIGWDYDSLFSLSVVANNLIMCSLGSISLALSLGSTTLVPSRMRGKLGGLYNTAESLGRFCGPVGYATTYAWSVSPSTL----EAFGGWVDYHLVFCASALALVVVGVMAWRTLT 541
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: A0A6H5KXK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK7_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.840e-48 Identity = 101/216 (46.76%), Postives = 135/216 (62.50%), Query Frame = 1
Query: 832 SSWFGANGLLASRLVQSLFCMELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIGMVLGWTGVGGMLFQFIAYPALCRTIGIKNLLSILGPAAVFIFLVIPDIQCSSWSKQHSYPVGVTLVVLVECCTSVYVTATMLALANAVPAHLRGQLSTLLAMGGGLGRMVGPATLCALLACSLNLSSAGSGHSGVGYFVDYHLTFVIESFVMLTVVLLG 1479
SS G GLL R V+ L M+ + ++ GF +YPLWLLAS ++GG+ W +PKIG VLGW+GVG +LFQF YPALC+TIGI LL G A F+ +PDIQ ++WS+ SY VGV +V+ + C SV TA LA ANAVP +RG++ + A+ GR++GPA LC LLA SL S+ +DYH FV+E +M + +LG
Sbjct: 101 SSLCGPGGLLTPRRVRLLVLMQCLVSIMDAGFVQMYPLWLLASKDSGGLEWPVPKIGKVLGWSGVGQLLFQFFVYPALCKTIGIVWLLRGSGLLAAAGFIFVPDIQRANWSENGSYVVGVAIVIFIGSCISVVETAMNLASANAVPVPMRGKMGGIFAVASSFGRVIGPAGLCTLLAWSLQSSNV---------LMDYHAVFVVEMVLMSVMFVLG 307
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI) HSP 1 Score: 184 bits (467), Expect = 1.920e-48 Identity = 141/465 (30.32%), Postives = 220/465 (47.31%), Query Frame = 1
Query: 1 SGFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVI-GMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSETLERQGLTRNGSFARCHTHSSVGEEDIENKSINIIGSDNENGPRPLKSANPRPLDDEATGKRA--AGILCMRENSVAEDPLKEQEMVSFMEGVATRNAASWKEKHDKPALVRHHDTPTSS----SWFGANGLLASRLVQSLFCMELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIGMVLGWTGVGGMLFQFIAYPALCRTIGIKNLLSILGPAAVFIFLVIPDIQCSSWSKQHSYPVGVTLVVLVECCTSVYVTATMLALANAVPAHLRGQLSTLLAMGGGLGRMVGPATLCALLACSLN 1374
+GFY+G+++GA+TLG LS Y WG +D GR+ V+++ LS+ +V S+ GLST+Y AI+ F+LG+ + + P R V E+ G + V+ MA + GAR++ I+ G MGG L QP H+PS FS+TG+F R+PFLLPNLV +ALL +P V+ + ET + F + + S P A + G L R S+ + + Q+ GV N + + KH + L TS+ G GLL+ V+ L + + + GF V+PLW L++V GG+ W +IG VL +G ++ Q +P++ + +G + + FL P+ + SW+ + V V + CC + A +A + VP+ LRG+LS L GR L A S++
Sbjct: 6 TGFYAGYVAGAFTLGRFLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYEVAISSRFVLGIMNGITPAVRTTVYEVCGTNSHVVQAMAYIDGARASTIVFGSAMGGLLVQPVDHYPSVFSATGLFGRFPFLLPNLVGMGVALLLLPTVIAYVPETKD---------FEKTRSRSXXXXXXXXXXXXXXXX---------XXXXXXSPARHRAVARHPPQGGKLAYR--SLEDGDVSAQQEAQETRGV---NDSGGRAKHKEGGLHAREPPVTSNREEQGLCGPGGLLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFLSGCIMVVAQVFIFPSVIKILGAVTWMRTGCLLGICTFLATPNAKLFSWNHTTLFAALVASVTVANCCLAAVGIALAVASTSIVPSRLRGKLSGLYGTAESFGRFASAVGSGVLFAWSIS 447
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LP15_ECTSI (Transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP15_ECTSI) HSP 1 Score: 164 bits (415), Expect = 9.340e-44 Identity = 91/196 (46.43%), Postives = 123/196 (62.76%), Query Frame = 1
Query: 892 MELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIGMVLGWTGVGGMLFQFIAYPALCRTIGIKNLLSILGPAAVFIFLVIPDIQCSSWSKQHSYPVGVTLVVLVECCTSVYVTATMLALANAVPAHLRGQLSTLLAMGGGLGRMVGPATLCALLACSLNLSSAGSGHSGVGYFVDYHLTFVIESFVMLTVVLLG 1479
M+ + ++ GF +YPLWLLAS ++GG+ W +PKIG VLGW+GVG +LFQF YPALC+TIGI LL G A F+ +PDIQ ++WS+ S VG +V+ + C SV TA LA ANAVP +RG++ + A+ GR++GPA LC LLA SL S+ +DYH FVIE +M + +LG
Sbjct: 1 MQCLVSMMDAGFVQMYPLWLLASKDSGGLEWPVPKIGKVLGWSGVGQLLFQFFVYPALCKTIGIVWLLRGSGVLAAASFIFVPDIQRANWSENWSCVVGAAIVIFLGSCISVVETAMNLASANAVPVPMRGKIGGIFAVASSFGRVIGPAGLCTLLAWSLQSSNV---------LLDYHAVFVIEMVLMSVMFVLG 187
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LP17_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP17_ECTSI) HSP 1 Score: 164 bits (416), Expect = 4.570e-42 Identity = 112/350 (32.00%), Postives = 178/350 (50.86%), Query Frame = 1
Query: 1 SGFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVIGMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSET-----LERQGLTRNGSFARCHTHSSVGEE-------DIENKSI-NIIGSDNENGPRPLKSANPRPLDDEATGKRAAGILCMRENSVAE---DPLKEQEMVSFMEGVATRNAASWKEKHDKPALVRHHDTPTSSSWFGANGLLASRLVQSLFCMELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIG 1002
SG+Y+G+++ ++T G L++Y WG AD GRK V+I+ LSS+ SV GLSTS+ A+ F+LGLT+ ++P R + E+ GP V GM + G++ G+++G +GG LAQPA +P FS+TG+FARYPFLLPNLV AL+ + LV++ L ET + + R +F + S G + +E K + + +D+E + + D A+ +L + +A +PLK+ + E D P R + A GLL++ V+ + + + GF VYPLW +++ + GG+GW +IG
Sbjct: 58 SGYYAGYVASSFTFGRFLTAYVWGNAADTIGRKPVVIVGLSSIMACSVVFGLSTSFAMAVGSRFVLGLTNGIMPAVRTLTREVCGPEHVVSGMNYIAGSKGVGLVMGTAIGGLLAQPASTYPGVFSATGVFARYPFLLPNLVGAGFALVMLALVIVFLPETRTSNKADARAAPRREAFPAANAISVAGRKLRKSSRSQLEYKPLKDNEEADSEQRKSAVSNYRSTKYRDAASPTGTELVLQGKRGRMATNRYEPLKDDGERGIQNDPTDNSCPGEGEGEDVPGPSRAEEIEPGMC--EAGGLLSTPNVKMVIFIAAMAQMSSIGFDEVYPLWAVSTTDVGGLGWAPVQIG 405
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LJX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX7_ECTSI) HSP 1 Score: 151 bits (381), Expect = 6.310e-37 Identity = 114/398 (28.64%), Postives = 183/398 (45.98%), Query Frame = 1
Query: 229 RIVVPEILGPSKAVIGMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSETLERQGLTRNGSFARCHTHSSVGEEDIENKSINIIGSDNE---NGPRPLKSANPRPLDDEATGKRAAGILCMRENSVAEDPLKEQEMVSFMEGVATRNAASWKEKHDKPALVRHHDTPTSSSWFGANGLLASRLVQSLFCMELSLMVVRTGFFHVYPLWLLASVENGGMGWNLPKIGMVLGWTGVGGMLFQFIAYPALCRTIGIKNLLSILGPAAVFIFLVIPDIQCSSWSKQHSYPVGVTLVVLVECCTSVYVTATMLALANAVPAHLRGQLSTLLAMGGGLGRMVGPATLCALLACSLNLSSAGSGHSGVGY 1413
RI + E+ GP ++GM L R+ +++G +GG LAQPA+H+PS FS+TG+F RYPFLLPNLV AL+ + LV++ L ET + + +F + + +E E+ S + +E NG ++ P TG S ++ +E+E+ G+ FG +GLL + V++L + + ++ GF YPL+ L++ + GG+GWN +IG VL TG+ FQ + P L + +GI N + F+ IP ++ SW+ + V C + A + VP+ +RG+L L M LGR +GPA A S++ SS+ +G V +
Sbjct: 5 RISLNEVCGPKHVLVGMNYLNSCRAISMVVGTGVGGLLAQPAVHYPSVFSATGLFGRYPFLLPNLVGASCALVIMVLVIIYLPETKDYATIAAKRAFLQ---EQQLQQEQQEHTSDGVSNGCSEAMANGTNTNRTNRDEPPPSSPTG-----------TSDVDEKGEEEEI-----GI-----------------------------FGRHGLLVTPHVKTLLTLGCVVQALQIGFEEAYPLFALSTPDVGGLGWNTFQIGKVLVMTGLFMACFQLLLLPPLIKVVGITNWQRVGFVVGALAFIAIPSVRLLSWNYPSLFSASVAANTFASCGLAAVTLAMSVGSTTLVPSRMRGKLGGLYNMAESLGRFLGPAGFAITYAWSVSPSSSAAGFDWVNF 354
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D7G0L9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L9_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.610e-33 Identity = 72/160 (45.00%), Postives = 105/160 (65.62%), Query Frame = 1
Query: 4 GFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVIGMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSET 483
GFY+G+++ ++T G LS Y WG DR GRK V+I+ L S+ FSV G+S SYT AI +LGLT+ ++P R + E+ G V GM A + +I G +GG LAQPA+H+P FFS+TG+F R+PFLLPNL+ ++++L++ L++ L ET
Sbjct: 31 GFYAGYVASSFTFGRFLSGYFWGFVTDRLGRKPVIIMGLLSMITFSVLFGISRSYTMAITTRLVLGLTNGIMPALRTTLSEVCGKKHVVRGMTYTSAATAISLIFGTGIGGLLAQPALHYPGFFSATGLFGRFPFLLPNLMGAVMSVLTLILIVFFLPET 190
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LET2_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET2_ECTSI) HSP 1 Score: 135 bits (341), Expect = 3.600e-32 Identity = 87/235 (37.02%), Postives = 133/235 (56.60%), Query Frame = 1
Query: 1 SGFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVI-GMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSETLERQ------------------GLTRNGSFARCHT------------HSSVGEEDI-------ENKSINIIGS 591
SGFY+G+++ AY LG+ LS Y WG +D GRK V+++ L +++V S+ GLST+Y AI+ F+LG+ + ++P R V E+ + V+ MA + GA++ I+ G MGG L QP H+P+ FS TG+F R+PFLLPNLV +ALL +P+V+ + ET + + GL+ S AR T ++S+G+ED+ E +S+N GS
Sbjct: 60 SGFYAGYVASAYMLGHFLSGYLWGYASDSVGRKPVILVGLLAVAVLSLTFGLSTTYELAISSRFVLGVMNGIMPAIRTTVYEVCTTNSHVVQAMAYIDGAKAVTIVFGSAMGGLLVQPVDHYPNVFSGTGLFGRFPFLLPNLVGVGLALLILPIVIACVPETKDFEDTCSRSRFSSVSSGEATSGLSAESSPARDRTIVRRPPKGGALAYTSLGDEDVSAQQAAQEPRSVNDSGS 294
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI) HSP 1 Score: 140 bits (352), Expect = 6.800e-32 Identity = 77/194 (39.69%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 1 SGFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVIGMALLPGARSAGIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSETLERQGLTRNGSFARCHTHSSVGEEDIENKSINI 582
+G+Y+G++S A+ +G + SSY WGR AD GR V+ L+S+ V S+A GLSTS+ A+ FLLG+ + L+ I++ + E+ G GMA + G S G++IGP +GG LA+PA H+P+ FS +G+F R+P+LLPN+V IAL +P V L ET H H++ G+ E K +++
Sbjct: 68 AGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLGCASIGLVIGPGLGGLLAEPATHYPTVFSQSGLFGRFPYLLPNIVGAGIALTGLPFVFFFLKETR--------------HVHNNRGDSSGEFKLLSV 247
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Match: A0A6H5JEL7_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 9.100e-32 Identity = 74/189 (39.15%), Postives = 109/189 (57.67%), Query Frame = 1
Query: 4 GFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALGLSTSYTGAIAVMFLLGLTDCLVPIARIVVPEILGPSKAVIG---------MALLPGARSA--------------------GIIIGPVMGGFLAQPAIHHPSFFSSTGIFARYPFLLPNLVAGIIALLSVPLVLLGLSET 483
GFY+G+++ ++T G LS Y WG D GRK V+II L S+++FS+ G+S +Y AI F+LGLT+ ++P R + E+ GP V+G + L ARS ++IG +GG L QPA+H+P+ FS TG+FARYPFLLPNLV ++++ ++ LV+ L ET
Sbjct: 11 GFYAGYVASSFTFGRFLSGYAWGSATDIIGRKPVIIIGLLSITIFSIIFGMSETYAMAIITRFILGLTNGIMPALRTSLSEVCGPEHVVLGKQRATITKDLLLSRLARSVVQNESHFPTQTLNSHVSGAISMVIGTGIGGLLVQPALHYPTLFSPTGLFARYPFLLPNLVGAVLSVFALVLVIFYLPET 199 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1218.1667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1218.1667.1 >prot_H-elongata_contig1218.1667.1 ID=prot_H-elongata_contig1218.1667.1|Name=mRNA_H-elongata_contig1218.1667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=500bp SGFYSGWLSGAYTLGNILSSYGWGRCADRFGRKSVLIISLSSLSVFSVALback to top mRNA from alignment at H-elongata_contig1218:3758..6860+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1218.1667.1 ID=mRNA_H-elongata_contig1218.1667.1|Name=mRNA_H-elongata_contig1218.1667.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3103bp|location=Sequence derived from alignment at H-elongata_contig1218:3758..6860+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1218:3758..6860+ >mRNA_H-elongata_contig1218.1667.1 ID=mRNA_H-elongata_contig1218.1667.1|Name=mRNA_H-elongata_contig1218.1667.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3000bp|location=Sequence derived from alignment at H-elongata_contig1218:3758..6860+ (Himanthalia elongata Himel1 dioecious)back to top |