mRNA_H-elongata_contig12123.1627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12123.1627.1
Unique NamemRNA_H-elongata_contig12123.1627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12123.1627.1 vs. uniprot
Match: D7FJX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX5_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 9.700e-85
Identity = 221/433 (51.04%), Postives = 265/433 (61.20%), Query Frame = 1 
Query:  496 EEEHTRFSRESAKARESAALAVSE-------AEGATQVAVWEVRSLREELGKARERXXXXXXXXXXXXXXXSAATR-------AELDGLREAVQAAEAAKERAEDGLARMKDKRKRDLQEVRRLNERMMEQQDSRHEQVGQLETAASDLRAKIVVLEERHACREEELANQEGGAVGEGVPVDGGGGEEHQREKKRIKEKEKELSLLRKLSEKLQREVEGLKSDLEAAASSKQEADDARESLAAALGRANARIAELTSKSAQLTRARSAMVAQIRALEEQASAAALKQASAARPA-AFVSNDQDATGVAASSAPLK-------VDMPPL--ETPMRQRXXXX-----QGVGSLDLEHGGG-----SRTALMQPGDHVKALLISCATGPACVEAAEGNPGWLTWLQHLPPQRLWTAAIVYLVLLHLVALYKTVVC 1692
            E+EH +    +A A E +ALA+SE       AE A QVA WE +SLREEL   RER               +AATR       AEL+GLR AV AAEA +E+AE+GLAR+K+K+KRDLQEVRRLNERMME Q +R E+V  LE +  +LRAK   LE  HA  +EE  +Q                        R +E+EKELSLLRKL EKLQREVEGLKSDLE  ++ + +A +A+   AAALGRANARIAELTSKSAQLTRARSAMVAQI ALEEQ  +AALKQA+AA    A  +N  D+  VA  S PL+          PP+  + PMRQR            G+LDLE GGG        A  +PGDHVK+LLISCA+ P     +E  PG +TWL   PPQ LWTAAI YL L+HL+A YK + C
Sbjct:   11 EKEHAQTLAAAASAHERSALALSETRGALSEAESAAQVAAWESKSLREELEGLRERSEELSSELEATRSREAAATRTAREGVGAELEGLRGAVGAAEAGREQAEEGLARLKEKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTDELE--HALAQEEQ-HQGXXXXXXXXXXXXXXXXXXXXXGPRREEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAQNAKNVSAAALGRANARIAELTSKSAQLTRARSAMVAQINALEEQLKSAALKQAAAATAGGAAETNTTDSGSVADFSTPLRDLSEVPPPSQPPMSADPPMRQRQRHRLSGAGPSSGNLDLEDGGGYFDEDEHKAQAKPGDHVKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKAITC 440
[Close]
BLAST of mRNA_H-elongata_contig12123.1627.1 vs. uniprot
Match: A0A6H5L1J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J2_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 9.580e-63
Identity = 273/692 (39.45%), Postives = 348/692 (50.29%), Query Frame = 1 
Query:    4 ELAAENEVRETKQAETEQALTRLEALQRDLAVADEALRSARDSEAAAAADARDARALAEEKASALREELMTV----RGENQNLRSQVSVAESTIDGMNS-------------------AXXXXXXXXXXXXXXXXXXXXXRAKLQERLQREL-QKWEARL--EEGVGVERARAVGKEREVLVLRAELSKAEEEHTRFSRESAKARESAALAVSEAEGA-------TQVAVWEVRSLREELGKARERXXXXXXXXXXXXXXXSAATR-------AELDGLREAVQAAEAAKERAEDGLARMKDKRKRDLQEVRRLNERMMEQQDSRHEQVGQLETAASDLRAKIVVL---------------------------------------------------------------------EERHACREEELANQEGGAVGEGVPVDGGGGEEHQREKKRIKEKEKELSLLRKLSEKLQREVEGLKSDLEAAASSKQEADDARESLAAALGRANARIAELTSKSAQLTRARSAMVAQIRALEEQASAAALKQASAARPAAFV-SNDQDATGVAASSAPLK-------VDMPPL--ETPMRQRXXXXQG-----VGSLDLEHGGG-----SRTALMQPGDHVKALLISCATGPACVEAAEGNPGWLTWLQHLPPQRLWTAAIVYLVLLHLVALYKTVVC 1692
            EL    E   ++ ++TE AL RL +++++LA+ ++AL  AR +                   SALREE+M        E+  LR Q++ AE+TI  M++                   AXXXXXXXXXXXXXXXXXXXX  +  QE L+REL  + EA L  E   G ER  AV  EREV  LR +LS++E+EH +    +A A E +ALA+SE  GA        QVA WE +SLREEL   RER               +AATR       AE++GLR AV  AEA +E+AE+GLAR+KDK+KRDLQEVRRLNERMME Q +R E+V  LE +  +LRAK   L                                                                     EE+H C     A +E   VGEG+  +  GG++      R  E+EKELSLLRKL EKLQREVEGLKSDLE  ++ + +A+DA++   AALGRANAR                              +AALKQA+AA     V +N  D+  VA  S PL+          PP+  + PMRQR            G+LDLE GGG        A  +PGDH+K+LLISCA+ P     +E  PG +TWL   PPQ LWTAAI YL L+HL+A YKT+ C
Sbjct: 1114 ELREVEEALSSQTSKTEDALARLSSMEQELALMEQALGEARGAAXXXXXXXXXXXXXTAAATSALREEMMLALEQAEEESSELRHQINAAEATIADMDATRAAANEETAALRAELAAAAXXXXXXXXXXXXXXXXXXXXELSAAQEMLRRELVAEREAALGAERREGAERVAAV--EREVEGLRVKLSESEKEHAQNLAAAAAAHERSALALSETRGALXXXXXVAQVAAWESKSLREELEGLRERSEELSSELEAARAREAAATRTAREGVGAEIEGLRRAVGTAEAGREQAEEGLARLKDKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTGELGHALAKALSEKDHLQQAATAXXXXXXXXXXXXXXXXXXXXXXXXXPIPSEGTIPVPAGDPNPRPQEPRQEEQHQCGG---AREEMVRVGEGLRSEERGGDQ------RRDEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAEDAKDVSTAALGRANARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAALKQAAAATVGRAVETNTTDSGSVAGFSTPLRDLSEGPPPSQPPMSADPPMRQRQRHRLSGAGLSSGNLDLEDGGGYFDEDENKAQAKPGDHIKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKTITC 1794
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12123.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJX5_ECTSI9.700e-8551.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1J2_9PHAE9.580e-6339.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12123contigH-elongata_contig12123:211..8192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size2673
Cds size1485
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.299418-UTR-H-elongata_contig12123:210..4201622929713.299418-UTR-H-elongata_contig12123:210..420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12123 211..420 +
1691679128.7917254-UTR-H-elongata_contig12123:210..4201691679128.7917254-UTR-H-elongata_contig12123:210..420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12123 211..420 +
1622929713.4342017-UTR-H-elongata_contig12123:7214..81921622929713.4342017-UTR-H-elongata_contig12123:7214..8192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12123 7215..8192 +
1691679128.892024-UTR-H-elongata_contig12123:7214..81921691679128.892024-UTR-H-elongata_contig12123:7214..8192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12123 7215..8192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.315596-CDS-H-elongata_contig12123:420..7021622929713.315596-CDS-H-elongata_contig12123:420..702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 421..702 +
1691679128.8033688-CDS-H-elongata_contig12123:420..7021691679128.8033688-CDS-H-elongata_contig12123:420..702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 421..702 +
1622929713.3292096-CDS-H-elongata_contig12123:1146..14641622929713.3292096-CDS-H-elongata_contig12123:1146..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 1147..1464 +
1691679128.8119175-CDS-H-elongata_contig12123:1146..14641691679128.8119175-CDS-H-elongata_contig12123:1146..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 1147..1464 +
1622929713.3391423-CDS-H-elongata_contig12123:2405..25551622929713.3391423-CDS-H-elongata_contig12123:2405..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 2406..2555 +
1691679128.820295-CDS-H-elongata_contig12123:2405..25551691679128.820295-CDS-H-elongata_contig12123:2405..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 2406..2555 +
1622929713.3509111-CDS-H-elongata_contig12123:3160..33281622929713.3509111-CDS-H-elongata_contig12123:3160..3328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 3161..3328 +
1691679128.8279-CDS-H-elongata_contig12123:3160..33281691679128.8279-CDS-H-elongata_contig12123:3160..3328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 3161..3328 +
1622929713.3610349-CDS-H-elongata_contig12123:4139..42551622929713.3610349-CDS-H-elongata_contig12123:4139..4255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 4140..4255 +
1691679128.8364918-CDS-H-elongata_contig12123:4139..42551691679128.8364918-CDS-H-elongata_contig12123:4139..4255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 4140..4255 +
1622929713.3777752-CDS-H-elongata_contig12123:4825..49381622929713.3777752-CDS-H-elongata_contig12123:4825..4938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 4826..4938 +
1691679128.846207-CDS-H-elongata_contig12123:4825..49381691679128.846207-CDS-H-elongata_contig12123:4825..4938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 4826..4938 +
1622929713.3911514-CDS-H-elongata_contig12123:5429..55721622929713.3911514-CDS-H-elongata_contig12123:5429..5572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 5430..5572 +
1691679128.8553555-CDS-H-elongata_contig12123:5429..55721691679128.8553555-CDS-H-elongata_contig12123:5429..5572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 5430..5572 +
1622929713.4022796-CDS-H-elongata_contig12123:6453..65731622929713.4022796-CDS-H-elongata_contig12123:6453..6573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 6454..6573 +
1691679128.864613-CDS-H-elongata_contig12123:6453..65731691679128.864613-CDS-H-elongata_contig12123:6453..6573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 6454..6573 +
1622929713.4187899-CDS-H-elongata_contig12123:7139..72141622929713.4187899-CDS-H-elongata_contig12123:7139..7214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 7140..7214 +
1691679128.8774004-CDS-H-elongata_contig12123:7139..72141691679128.8774004-CDS-H-elongata_contig12123:7139..7214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12123 7140..7214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12123.1627.1prot_H-elongata_contig12123.1627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12123 421..7214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12123.1627.1

>prot_H-elongata_contig12123.1627.1 ID=prot_H-elongata_contig12123.1627.1|Name=mRNA_H-elongata_contig12123.1627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=495bp
MTVRGENQNLRSQVSVAESTIDGMNSARAELEEKVASLREKLEATEAERA
KLQERLQRELQKWEARLEEGVGVERARAVGKEREVLVLRAELSKAEEEHT
RFSRESAKARESAALAVSEAEGATQVAVWEVRSLREELGKARERSEELSA
AAEEARERGSAATRAELDGLREAVQAAEAAKERAEDGLARMKDKRKRDLQ
EVRRLNERMMEQQDSRHEQVGQLETAASDLRAKIVVLEERHACREEELAN
QEGGAVGEGVPVDGGGGEEHQREKKRIKEKEKELSLLRKLSEKLQREVEG
LKSDLEAAASSKQEADDARESLAAALGRANARIAELTSKSAQLTRARSAM
VAQIRALEEQASAAALKQASAARPAAFVSNDQDATGVAASSAPLKVDMPP
LETPMRQRQRQRQGVGSLDLEHGGGSRTALMQPGDHVKALLISCATGPAC
VEAAEGNPGWLTWLQHLPPQRLWTAAIVYLVLLHLVALYKTVVC*
back to top

mRNA from alignment at H-elongata_contig12123:211..8192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12123.1627.1 ID=mRNA_H-elongata_contig12123.1627.1|Name=mRNA_H-elongata_contig12123.1627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7982bp|location=Sequence derived from alignment at H-elongata_contig12123:211..8192+ (Himanthalia elongata Himel1 dioecious)
CAGGAACTGGCGGCGGAAAATGAAGTCCGAGAGACGAAACAAGCCGAGAC
GGAACAAGCGCTGACCCGTCTAGAAGCCCTACAGCGGGACCTTGCCGTCG
CCGACGAGGCGCTGAGGTCGGCCAGAGACTCCGAGGCGGCCGCCGCCGCC
GATGCCCGTGACGCCCGAGCTCTCGCGGAGGAGAAAGCCTCGGCGCTGCG
GGAAGAGCTGATGACCGTGAGAGGTGAAAACCAGAACCTTCGAAGCCAGG
TATCGGTAGCGGAGTCGACCATCGACGGCATGAACTCCGCGCGGGCGGAG
CTCGAGGAGAAAGTCGCGTCGCTCCGGGAGAAGCTGGAAGCTACCGAGGC
TGAGCGCGCGAAGTTGCAGGAACGCCTCCAGAGGGAGTTGCAGAAGTGGG
AGGCTAGGCTAGAGGAAGGGGTCGGGGTGGAGCGCGCCCGTGCGGTGGGT
AAGGAACGGGAAGTGCTGGTGCTGCGGGCGGAGCTCTCTAAGGTAACCAC
GCCAACGCACACACATACACTCGTACGGTGGGGACATTCCCTCTTGCCCC
CCTTTTCTTCTATAGTTTAGTCTGTCTTTGATGGCGACGTCAAGATATGC
CATTTTTGTACTGTGACCCCCCCCCCATTATTCAACCCGGGGTCTTCGTC
GATCGAGTTTTATATAGGTGGAAGGAATGCGGGGAGAGGGGACGCGTGTT
TTCTCCCATCTTTATGGTATAATGTGTGCAGTAGTTTCGATATCCCCTCC
CTCATTCTCTGATATCCCCTCTCTTTTTTTTTCTTTTTCTTTTTTTCAAT
TTTCCTGTCTATTATTTCGAGAAAAAAATAAAACTCTACATCGCCGCCGC
ATTCCAATCGGAATAGTATTCAAAATCGGGGACAATTCGTGCTGCTTGGC
CCGTTTTCTAACGCCTTCTTTCCGAACCCGTCCTAGGCGGAGGAGGAGCA
CACTCGGTTCTCGAGAGAGAGCGCCAAGGCGAGAGAGAGCGCCGCACTTG
CGGTGTCCGAAGCGGAGGGGGCGACCCAGGTGGCGGTGTGGGAGGTCAGG
TCACTTCGTGAAGAGCTGGGGAAAGCCCGGGAACGTTCCGAAGAACTTTC
GGCGGCGGCGGAAGAGGCTCGCGAACGGGGGTCGGCGGCAACTCGAGCGG
AGTTGGATGGTCTCCGGGAGGCGGTTCAAGCGGCGGAGGCGGCCAAGGAG
AGAGCAGAGGACGGGCTCGCTCGCATGAAGGACAAGAGAAAAAGGGACCT
CCAGGTTGTTGCTTGATAGGCAGCATGCGCGGAGGGGCGTCAGCCGTCGT
TTCTCGTGTTGTTTCTCTGATGTTTGATATCCGTTCGGATAGAGAGGGGT
AGAGAGGGGGCCGGTGTTTCCCTTTCCCGCCTTGTTTCCCATCTCATTTT
CTTGTTTAAAACATATATCCAGGGGGGTGGCGCTTGCTCTTCAGCTCGCA
TTTCCCCGGTTGGATAACGCCTGCTCTATGTCTCGTGTCTACGTCCCTTG
TATCAGTGTGCCTGTGGGATGGGTTGTTGGCTCGGGCGTGCGGTTTGCGT
GCCTCAGAGTTTGGATCCCTCGAGGCGAATCTCGGAGGGGGTTGTCATTC
GCGCCTCAATCACACACATACAGACATAAAATAATCCTGACCGGCGTAAA
TCGCTGTCGTCGTGTGTGTGTGTGTATGTGTATATATTTATTAAATTGCG
CATAACCGCGCGATCCGGCCCTGTCATGCTAGCTCTTCTAGGCTACTCTC
GCATTGATCCTCCCAATGGGGGATTCAATCATATTTGCTACAAAAAATCT
CTGATCAGACGTGTGACAAAGGCGACACAATCTCTCTACAATTTCGCATC
TAAACCATCAATACCTTGCGCTTCCTTTTGTGCTTCCTTGTTCGTTATAT
AGCTATATAGTATATAGCATCTTCGGTCGGCCACTATTGGACCAACGCTC
TCCCGTCTATGTGCGCATTTATGTTATGTATCGTTGCCAGCTCGCTACAA
AAAATGCGCTTGTAATCTGCTCTGCTGACGTTTTTTGATGCCATGACGTT
TCATCCTGTCCGTGACGTCACGTGATGTCCGTGGTGTCACATGAGATGTC
CTATCATAAAATATGACGTGACTCGGTGTTTCGTCGCGCGATGCCATGGT
GCCATGGTGTGGCGTTATGTGACGTAATATGATGTAACGCGACAGGAGGT
TCGGCGGCTGAACGAGCGCATGATGGAGCAGCAGGATTCTCGGCACGAAC
AGGTTGGGCAGCTAGAGACCGCCGCATCCGACCTCAGGGCGAAAATCGTC
GTCCTGGAGGAGCGCCACGCTTGCCGGGAAGAGGAGCTGGCCAACGTGAG
CTCCCCCCCTCCCCCATCCCCCACCCCCCTAATATAACAGCGAAGCCATG
TGGAACTTGAGCACGCCTCCCCTTCCCTTAACAAAACTGTTCGCAAGGGG
TAGATAATGCGTGGTTTGTGAGGGGCATCGTGTTTCGAGGCTGTGCGTGA
CTGCAACGGGTTTTGTATGAGCGATTGAACAAGGACAGTGTCGATGCCGA
TCTCGGTATATCTCGGTATACAATACCGCGGGCCGCTTCTTTTTCCAGCA
GCCTCCGTCTTGGGCACATCAGGTAGACACACGCCACCCTAGGAAAGAAA
CCCTTCCTCTTCGAGGGTGTGTGTATTTATTTTTTATGTGCTCAAGTTTA
TATTTTAACAAGTTTTCGATTTTTTTTTTTGGATATATTTCATGAATGCA
TCTGTACATATATGTTAAGTCCTTTATTTATTTATTTTTCTCGTGTGCGC
GCGTGTGCTGTCCTGGTGCAGATACTGAAGGAGAGGAACGAGCTGCACCA
AGCAGCTGCGAAGACAGCGGAGGCATCAGCTTCCTCCGCTTCCTCTCAGA
CTGTTTCTGATTTGGCCGTTGACCGCGTAACCGAAAAACAGCAGCAGCAG
CAGGAAGGAGGAGCAGTGGGGGAGGGTGTTCCAGTTGACGGAGGCGGTGG
CGAGGAGCATCAACGGGAGAAAAAAAGAATCAAAGAAAAGGAGAAGGAGC
TCTCGCTGCTGAGAAAGCTGTCGGAGAAGCTTCAGCGGGAGGTGGAAGGT
CTCAAGTCCGACCTCGAGGTGAGGCACCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACCCCTCCCCCCTCCGCCCTCAAATAGTAAAAAAAANNNN
NNNNNNCCGGGGGGGGGGGGAGGCTCCAATCCCCCCCCCCAGGGGGGGCC
CCCCCCCCCCCCCCCCCTATCCGCTATCCGCTATCCGCTATCCCTGTCGC
GTAATATTAGTAAAAATATCCACATTATTCGAACCTGACGATAGATGATC
CCCTGGACTACACTTCTCATGGTGCTAAGAAGGCGTGGATGTTCGGAGGG
TTGGAATGAGTTCATATGTTTTTTAATAATAATAATGCACCTGCATTCGT
GCGTACCTGTAAATCTTCATGCTCGTGTATGCATAATCCACGTGCTCGTG
CTCGTGCTCGTGGTACGTGTTTTAATGGATATGAAAGAGGAACGACTTGG
AACGGGGCGGGATGAGGGGGAATCAATATCGCCGTGTTTAAAGGATTCCC
CTCTCCGTCTGCCGTCTGCCGTCCGCTTTAACCTGACGGAAAATACTAGT
AACACACCACACTTGTTAGGTATCGTTTATTTCTCGAGAGGAAATGCACC
TTGCGCACCTTGCGATGGGGCTGATAAGTTAAGTTGCCGTACTGCTGACC
AAGCAAGCACTTCCCTATATTTAGTCCGCCTTTTTTTGTGTGTCTCTCTC
TCTCTATATATATATTTGTGTATGTCGTAGTTATTTCGGTGTGCGCGTAT
CAAGGAAAACGCGCGGGGTTTTCTAGAGAGGTTCCTCAGTTATTTTTTTG
TTTGGGTTTGTTTTTTTCCTCGCGCCCAGGCGGCAGCGTCGAGCAAGCAG
GAGGCGGACGACGCGCGGGAGAGCCTGGCAGCCGCTCTCGGTCGGGCCAA
CGCGAGGATTGCCGAGCTCACGTCCAAGTCCGCCCAACTCACGAGGTGCG
ACAGAGGGAGGAGGTACTAGAGAGGGAGGCGGTGCTGCTACAAAAACAGA
CGGACGGACGGAGGAACGAACAGACGGACTCACGTTGTTTGATGATGTAG
TATGGGTTATAGAGGATTAATGGATGTGTCAATGGATGGATAACCACTTG
GAGGAAATTTCTCGCCGTTTTATTGTCTCGCCGTCGGCCGGAGGAACTTT
CTCTCCATTTCCGTCTTCGTACCGGCAGTCGGCCGTTTAGAGACAAGTAA
CGTTGGTATCGCGCTTCTTTTCGACCAAGGGCAACAAAAACGCCATTTGG
ACTGTTTGCCCTAGCGGTGTGTGTGTGTGTGTGTGTCTGACCTCGATTTT
CCGCGAAGTACTCGCGCTTCCTTTGTCCCACGCCGACTCGCTCGAGGACA
GGGGAGATAATATCTCGCCTCCCCCCTGCCGGCCGTTACGGCTGTGGGAA
CCATACTACTAGTACGTTCTGTCATAGCGTGACAAAGCCTGCACCCCTTA
CTTTGGCTTCGGCCGGGTGTCTCTTTTCCTCTTCAAAACGATATCCCGCG
CGCGCGCGTCTCCAGAGCGCGGTCCGCAATGGTGGCTCAGATACGTGCCC
TCGAGGAGCAGGCCAGCGCCGCCGCGCTAAAGCAGGCGTCCGCGGCCAGG
CCCGCCGCCTTCGTATCCAACGATCAGGGTACGCCCCGCGCCGCACGCTA
GATGTACTGGGTTTAGTGCTGTACTTTGGAACAGCTCACAGCAGCGAGAC
CGTGTGCTGTATCCTAGGAGGGGTTTCTGTAGAGCTGCGAGGGATGCCTT
TTGGTGATGTGGCTTTTTGCATAAAATTATTTATATACAAGCGTCATCTC
GGGGACGACTCGAACCACGTTTTACCAGAGCACATCACAATTTAAGTTAA
GCTTTTTTACACAGTTCCCAAACGAATCTGAGCAAGGACGGACGACTAGA
GTCTAAAACTGGCGCCCCGCGGGGTTTGTGAAACTTGTGCGAGGCGTTTT
TTGCTGTGATTGCGTGACCTTTGCCCTGCTCGTACCGAGAGAAGATGTCA
TCGGAAGAGTAAAGGCTAACAATTTTGACGGATGTCGCTCTACCCACACT
CACCTCATGTTTTTGTTTTTGTCGCTGCTTTCTCGTCTCGCCGCGAATTA
TTAATTCCGTTTTTCCAAGACGCGACAGGTGTGGCAGCGTCCTCCGCGCC
CCTGAAGGTAGATATGCCTCCATTGGAAACCCCCATGCGGCAGCGGCAGC
GGCAGCGACAGGGGGTGGGCAGTCTGGACCTCGAGCACGGTGGAGGATCA
CGGACAGCTCTGGTCGGAGGACAAAATAGGAACGACTTCATGGATGACGA
ATATAAGGTTTGGTTGTGGGGCGTGGGGATTTAGGAGGGGTGGGTTACAT
GACGTCTTTGAACACACGGTCGCGCAAGGGTTGACACGCGGGAGGACGCT
GACGCGGGAGAAAAAGAGGCGTTCCTGGGATCCCTGATCTCCTACGGGGT
GCCTTCGAGGATAAGGGAAAATGATGGTAAACAATGCCTTTCGTACCGTG
TGCCTTCCCCGCTATAGCTTCTACTTGCCCTCTTACTGCGAGGGTTTTTG
TCTTAAACTAAGAGGAGCGCGGTCTTTCGACCCCAATCCCCTCCCAGGAT
GTTTCGTCGTATCAGAGCCTGTAGCTGAATAAAATTTTACTTATCATTTG
GAACAGGACTGTGTGTGTCCTCCCTACATCCTTGAGCTAGAGTACCCATT
CGCCCCGGTGTCTCGTTCAGGGAGAAAACGCCCCCGCCACACGATTCTAT
ACAACTCCATACCAGACCTAAACGTGTGATAATTCGTGCTAATAGTCAGT
AATGTACCCATTCGAACCTGTCGATGATTGTTGGTCACCTGTGGTCCTCG
TTCACCTCTCGTGGTGTAAAAAGGGTGTGGATGGCCGGAGATTTTGAATG
AGTTCATGTGTTTTTCAAGGAAAATATTTACAGTGCACTGACAGATAAAA
TAACCTACCATGAAAACCCATATCGTTCCAAACCTTGGCGCAACATACGT
ACCACACCATACGTGGATTTTTTACTCAGCCCGTTTCACTCATGCCGAAC
CGACTAATATTATGCTGTATCGCCCCTGGAACGTAACGTTGCATAATCAT
CAATATCATCGATAACACCATTTTTTGTTCAAACTCCCGCCAGATGCAAC
CCGGCGACCACGTCAAGGCCTTGCTAATCTCCTGCGCGACGGGCCCCGCT
TGCGTAGAGGCTGCGGAGGGAAATCCCGGATGGCTGACGTGGCTGCAACA
TCTCCCGCCGCAGGTCGGACATGATCATCCTGCCCCCCCCCCCCTCTTTC
CCCACGTGTTGGGGGCCGTTTCCCGTCCCATGCGTCCTCCTGTTTTGTAC
AAGTTTGACAAGTTCCCGCCTGGAGCACTGCACTTGTTCAGTCGCGTCGG
CGGTGGGTGGTGGGGACGGGGGCGGGGTTTTCATAAAATATCGCGTTTTT
AATCTGATTCTTCGAATGAGCCCTACAACAGGTAAACGACTCAGCCTTGT
TTTAGATTAGAGGAAGGAGTAGCGGGCGCAAGCGACATTCCTGCGTGTAT
CGTAACATCCCGCGAAAAGCCGTCTATGGTACACAGGCTTCCGTACGGCC
TCCCGCATCACCGCGGTACGCGCAAACAAGTCTCCGAATTTCTTATCCAA
ACCCCGTGGGAAGGAGACCCTGTGACCTTCTCTCCTCTCTCGTGATGTAT
GTAGGTCTACGTGCTGCTAGTATGTACCTTGTACTTTGTACCTTGTACAC
GTCGCACCCGCGTCTTAATATATACCGGTATTTTACTTATCTCTCTCTAT
GTATCTCTTTCTTTTCCCCGTACATTCAGAGACTGTGGACCGCGGCCATT
GTGTACTTGGTGCTTCTTCACCTGGTTGCTTTGTACAAGACCGTGGTGTG
CTGACGTCATGGATCGAGCAAGCAACATGGTGTGGAACGATTGGCAGGCT
GGGCTGCGCGCGTGTTTTTTGTTGGTGTTATTTTGAGTGGACGAGCACGT
TACCGGCGTTTTATATTTCCTCCTCCCCCCCCTCATCTCTAGCGGGTTGA
AATTATTTTGCCATTGAATACTGTAGCTGATTGTGGTCCAGCGGGTTTCC
GTCGTTTGAAACATCTGGAGTTCTATTCTCAGGGTGGGCGTACTTCGCAG
GGGCTTTATTCGATGCAACTGACCGTTTGACCCCCTCCCCCCAGTGTATC
TTCGTGACGCGAGGAATGTGCCAATTTTAGTGAAAGCTGATGTCGTCGGG
GTACATGAGCGCGCAGTGGTTGAATGGAGGCTCGAGACGGCGTTGCTCTT
TTTTGTTTTAGAGCGTGCTTATACGAAGATCACCGAGACGCCCGTCCTCA
TCCGAATGCTTCGGCCTGCGTACTGAAGAATTCGACGCAACAATCCAAGC
CGCGCTGCGTTTCATTGCGTTGTTCTTGTCTGAGAGAAGGAGTAAGGATC
CGGGTTATATGATGCAACAACGGGATACCAAGGTGGCCGTCTTGCTTGTC
GAGGACAACCAGTAGACGCCGTTCCTCGGATCGAGTATTATTGCCCTTTC
TATCCAAGCCATGTCCTTCAGGTCGGCAGGATACGAAATAGCAGTATAAG
GATAGTATATTGATATACAGCAGTATGTGTTCAGTCGTGGTACACCGCAC
GCACCAACCACCTGATGCTGGAAAGCTTCGAATTGAAGGACGAGTAAGAC
TCGAATACGTACGGCGCCGATGGTCAGTCTCATATGTGTGTCATGCTTCA
CCAAACCTCCTCAGTAATAACAAAATTATATTAGCACAGCACAGCTGTAC
AATCCTCCCTAGAGTAATGCTGGTTGATTTTGGCCCATGACCCTCTAACG
GTCACTTTATGGATACATGTTCGTTTTCTTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12123:211..8192+

>mRNA_H-elongata_contig12123.1627.1 ID=mRNA_H-elongata_contig12123.1627.1|Name=mRNA_H-elongata_contig12123.1627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2970bp|location=Sequence derived from alignment at H-elongata_contig12123:211..8192+ (Himanthalia elongata Himel1 dioecious)
ATGACCGTGAGAGGTGAAAACCAGAACCTTCGAAGCCAGGTATCGGTAGC
GGAGTCGACCATCGACGGCATGAACTCCGCGCGGGCGGAGCTCGAGGAGA
AAGTCGCGTCGCTCCGGGAGAAGCTGGAAGCTACCGAGGCTGAGCGCGCG
AAGTTGCAGGAACGCCTCCAGAGGGAGTTGCAGAAGTGGGAGGCTAGGCT
AGAGGAAGGGGTCGGGGTGGAGCGCGCCCGTGCGGTGGGTAAGGAACGGG
AAGTGCTGGTGCTGCGGGCGGAGCTCTCTAAGATGACCGTGAGAGGTGAA
AACCAGAACCTTCGAAGCCAGGTATCGGTAGCGGAGTCGACCATCGACGG
CATGAACTCCGCGCGGGCGGAGCTCGAGGAGAAAGTCGCGTCGCTCCGGG
AGAAGCTGGAAGCTACCGAGGCTGAGCGCGCGAAGTTGCAGGAACGCCTC
CAGAGGGAGTTGCAGAAGTGGGAGGCTAGGCTAGAGGAAGGGGTCGGGGT
GGAGCGCGCCCGTGCGGTGGGTAAGGAACGGGAAGTGCTGGTGCTGCGGG
CGGAGCTCTCTAAGGCGGAGGAGGAGCACACTCGGTTCTCGAGAGAGAGC
GCCAAGGCGAGAGAGAGCGCCGCACTTGCGGTGTCCGAAGCGGAGGGGGC
GACCCAGGTGGCGGTGTGGGAGGTCAGGTCACTTCGTGAAGAGCTGGGGA
AAGCCCGGGAACGTTCCGAAGAACTTTCGGCGGCGGCGGAAGAGGCTCGC
GAACGGGGGTCGGCGGCAACTCGAGCGGAGTTGGATGGTCTCCGGGAGGC
GGTTCAAGCGGCGGAGGCGGCCAAGGAGAGAGCAGAGGACGGGCTCGCTC
GCATGAAGGACAAGAGAAAAAGGGACCTCCAGGCGGAGGAGGAGCACACT
CGGTTCTCGAGAGAGAGCGCCAAGGCGAGAGAGAGCGCCGCACTTGCGGT
GTCCGAAGCGGAGGGGGCGACCCAGGTGGCGGTGTGGGAGGTCAGGTCAC
TTCGTGAAGAGCTGGGGAAAGCCCGGGAACGTTCCGAAGAACTTTCGGCG
GCGGCGGAAGAGGCTCGCGAACGGGGGTCGGCGGCAACTCGAGCGGAGTT
GGATGGTCTCCGGGAGGCGGTTCAAGCGGCGGAGGCGGCCAAGGAGAGAG
CAGAGGACGGGCTCGCTCGCATGAAGGACAAGAGAAAAAGGGACCTCCAG
GAGGTTCGGCGGCTGAACGAGCGCATGATGGAGCAGCAGGATTCTCGGCA
CGAACAGGTTGGGCAGCTAGAGACCGCCGCATCCGACCTCAGGGCGAAAA
TCGTCGTCCTGGAGGAGCGCCACGCTTGCCGGGAAGAGGAGCTGGCCAAC
GAGGTTCGGCGGCTGAACGAGCGCATGATGGAGCAGCAGGATTCTCGGCA
CGAACAGGTTGGGCAGCTAGAGACCGCCGCATCCGACCTCAGGGCGAAAA
TCGTCGTCCTGGAGGAGCGCCACGCTTGCCGGGAAGAGGAGCTGGCCAAC
CAGGAAGGAGGAGCAGTGGGGGAGGGTGTTCCAGTTGACGGAGGCGGTGG
CGAGGAGCATCAACGGGAGAAAAAAAGAATCAAAGAAAAGGAGAAGGAGC
TCTCGCTGCTGAGAAAGCTGTCGGAGAAGCTTCAGCGGGAGGTGGAAGGT
CTCAAGTCCGACCTCGAGCAGGAAGGAGGAGCAGTGGGGGAGGGTGTTCC
AGTTGACGGAGGCGGTGGCGAGGAGCATCAACGGGAGAAAAAAAGAATCA
AAGAAAAGGAGAAGGAGCTCTCGCTGCTGAGAAAGCTGTCGGAGAAGCTT
CAGCGGGAGGTGGAAGGTCTCAAGTCCGACCTCGAGGCGGCAGCGTCGAG
CAAGCAGGAGGCGGACGACGCGCGGGAGAGCCTGGCAGCCGCTCTCGGTC
GGGCCAACGCGAGGATTGCCGAGCTCACGTCCAAGTCCGCCCAACTCACG
AGGCGGCAGCGTCGAGCAAGCAGGAGGCGGACGACGCGCGGGAGAGCCTG
GCAGCCGCTCTCGGTCGGGCCAACGCGAGGATTGCCGAGCTCACGTCCAA
GTCCGCCCAACTCACGAGAGCGCGGTCCGCAATGGTGGCTCAGATACGTG
CCCTCGAGGAGCAGGCCAGCGCCGCCGCGCTAAAGCAGGCGTCCGCGGCC
AGGCCCGCCGCCTTCGTATCCAACGATCAGGAGCGCGGTCCGCAATGGTG
GCTCAGATACGTGCCCTCGAGGAGCAGGCCAGCGCCGCCGCGCTAAAGCA
GGCGTCCGCGGCCAGGCCCGCCGCCTTCGTATCCAACGATCAGGACGCGA
CAGGTGTGGCAGCGTCCTCCGCGCCCCTGAAGGTAGATATGCCTCCATTG
GAAACCCCCATGCGGCAGCGGCAGCGGCAGCGACAGGGGGTGGGCAGTCT
GGACCTCGAGCACGGTGGAGGATCACGGACAGCTCTGACGCGACAGGTGT
GGCAGCGTCCTCCGCGCCCCTGAAGGTAGATATGCCTCCATTGGAAACCC
CCATGCGGCAGCGGCAGCGGCAGCGACAGGGGGTGGGCAGTCTGGACCTC
GAGCACGGTGGAGGATCACGGACAGCTCTGATGCAACCCGGCGACCACGT
CAAGGCCTTGCTAATCTCCTGCGCGACGGGCCCCGCTTGCGTAGAGGCTG
CGGAGGGAAATCCCGGATGGCTGACGTGGCTGCAACATCTCCCGCCGCAG
ATGCAACCCGGCGACCACGTCAAGGCCTTGCTAATCTCCTGCGCGACGGG
CCCCGCTTGCGTAGAGGCTGCGGAGGGAAATCCCGGATGGCTGACGTGGC
TGCAACATCTCCCGCCGCAGAGACTGTGGACCGCGGCCATTGTGTACTTG
GTGCTTCTTCACCTGGTTGCTTTGTACAAGACCGTGGTGTGCTGAAGACT
GTGGACCGCGGCCATTGTGTACTTGGTGCTTCTTCACCTGGTTGCTTTGT
ACAAGACCGTGGTGTGCTGA
back to top