mRNA_H-elongata_contig12113.1622.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 105 bits (262), Expect = 3.480e-23 Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTPS 188
TGNSC H GY +FNP SWPS CAP+K DWI + CGDGD+YPEE+WNCADI I+SDG P+
Sbjct: 247 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPA 308
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.110e-22 Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTP 185
TGNSC H GY +FNP SWPS CAP+K DWI + CGDGD+YPEE+WNCAD+ I+SDG P
Sbjct: 244 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGP 304
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.240e-22 Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTPSDT-----TPVP 206
TGNSC H GY +FNP SWPS CAP K DWI + CGDGD+YPEE+WNCADI I+SDG P+ + TP P
Sbjct: 246 TGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAP 318
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.720e-22 Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTP 185
TGNSC H GY +FNP SWPS CAP+K DWI + CGDGD+YPEE+WNCADI I+SDG P
Sbjct: 251 TGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGP 311
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.210e-22 Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSD---GTPSDTTPVP 206
TGN+C HPGYD+F+P S P CAP KEDW+ T L MCG+ YPEE+WNCADIEI+SD G P+ TTP P
Sbjct: 311 TGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPTTPSP 381
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.310e-22 Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTP 185
TGNSC H GY +FNP SWPS CAP K DWI + CGDGD+YPEE+WNCADI I+SDG P
Sbjct: 246 TGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDGDP 306
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 100 bits (249), Expect = 7.790e-21 Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 3
Query: 9 NSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTP 185
NSC H GY +FNP SWP CAP+K DWI + CGDGD+YPEE+WNCAD+ I+SDG P
Sbjct: 215 NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDGGP 273
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 8.580e-21 Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSM-CGDGDSYPEEYWNCADIEISSDGTP 185
TGNSC H GY +FNP SWPS CAP+K DWI + CGDGD+YPEE+WNCAD+ I+SDG P
Sbjct: 195 TGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGP 256
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.090e-20 Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTPSDTTP 200
TGN+C H GY++FNP SWPS CAPNKEDW+ T CG G YPEE+W C+D I+ D TP TP
Sbjct: 248 TGNTCHHIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDATPPSPTP 313
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 4.510e-20 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 3
Query: 3 TGNSCMHPGYDDFNPSSWPSECAPNKEDWILTGLSMCGDGDSYPEEYWNCADIEISSDGTPSDTTPVP 206
TGN+C H GYDDF P SWPS+CAP K +WI T MCG +YPEE+W+C+DI I++DG P++ +P P
Sbjct: 72 TGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDG-PTEESPSP 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12113.1622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12113.1622.1 >prot_H-elongata_contig12113.1622.1 ID=prot_H-elongata_contig12113.1622.1|Name=mRNA_H-elongata_contig12113.1622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MRAEQRRLDPYRFEHVWRRRQLPRRILELRRHRDLVRWNAFRYYSSPSSFback to top mRNA from alignment at H-elongata_contig12113:1791..4265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12113.1622.1 ID=mRNA_H-elongata_contig12113.1622.1|Name=mRNA_H-elongata_contig12113.1622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2475bp|location=Sequence derived from alignment at H-elongata_contig12113:1791..4265+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12113:1791..4265+ >mRNA_H-elongata_contig12113.1622.1 ID=mRNA_H-elongata_contig12113.1622.1|Name=mRNA_H-elongata_contig12113.1622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig12113:1791..4265+ (Himanthalia elongata Himel1 dioecious)back to top |