mRNA_H-elongata_contig121081.1618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig121081.1618.1
Unique Name	mRNA_H-elongata_contig121081.1618.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.970e-22
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A  NVRT+AV+G  G GRA + L+   R    V+G+QETRR+GR+ F  AG+ V+C   CG+E GG  G   VG+A++ S+ + +    +FI + L+ +   L G   AV     YAP E   A +K  FW  LD
Sbjct:  113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLD 244

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BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.790e-22
Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A  NVRT+AV G  G GRA + L+   R    V+G+QETRR+GR+ F  AG+ V+C   CG+E GG  G   VG+A++ S+ + +    +FI +RL+ + L L G   AV      AP E   AS+K  FW  LD
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLD 189

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BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.750e-21
Identity = 49/138 (35.51%), Postives = 80/138 (57.97%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A++ ++ +A++   +++  RL+ +  E+ G   AV     YAP +   A +K  FW  LD
Sbjct:   56 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLD 187

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BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.930e-21
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ ++++   +++ +RL+ +  E+ G   AVT    YAP +     +KH FW  LD
Sbjct:   74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLD 205

[Close]

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-21
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ ++++   +++ +RL+ +  E+ G   AVT    YAP +     +KH FW  LD
Sbjct:   19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLD 150

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BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.280e-21
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ ++++   +++ +RL+ +  E+ G   AVT    YAP +     +KH FW  LD
Sbjct:  306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLD 437

[Close]

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.320e-21
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ ++++   +++ +RL+ +  E+ G   AVT    YAP +     +KH FW  LD
Sbjct:  510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLD 641

[Close]

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.030e-19
Identity = 48/138 (34.78%), Postives = 78/138 (56.52%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTVFVVYAPNETQNASNKHAFWTSLD 411
            + +A +NVRT+AV+G  G GRA   L+   +     +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ +A++   +++ +RL+ +  E+ G   AV     YAP +   A +K  FW  LD
Sbjct:   44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLD 175

[Close]

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5KE09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE09_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.640e-14
Identity = 40/115 (34.78%), Postives = 70/115 (60.87%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRGRAKAVTV 342
            + +A +NVRT+AV+G  G GRA + L+   + G   +GLQE RR GR+ F  +G+ V+    CG++ GG  G   VG+A+  ++ +A++   +++ +RL+ +  E+ G   AV +
Sbjct:   44 VRVATYNVRTLAVNGANGYGRADSVLHEATKQGISFVGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNL 152

[Close]

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Match: A0A6H5JLQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.390e-10
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 1

Query:    1 ITIAIHNVRTMAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCSGECGSENGGKKGQGGVGLAIRTSITRAAR-PPKFISDRLLKVTLELRG 321
            + +A  +VR +AV+   G G A + L+   R    V+G+QETRR+GR+ F  AG+ V+C   CG+E  G  G   VG+A++ S+ + +    +FI +RL+ +   L G
Sbjct:   85 LRVATWHVRALAVNRANGYGPAYSVLHEAARQDASVVGMQETRRAGRTEFAAAGFRVFC---CGTETDGVHG---VGIAVKESLCKTSTFTTEFIDERLMTMGFLLAG 186

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot

BLAST of mRNA_H-elongata_contig121081.1618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5KDS6_9PHAE	1.970e-22	39.86	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBD7_9PHAE	5.790e-22	41.30	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LI16_9PHAE	2.750e-21	35.51	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KQZ7_9PHAE	4.930e-21	35.51	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K7U5_9PHAE	5.200e-21	35.51	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K319_9PHAE	5.280e-21	35.51	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JLM6_9PHAE	5.320e-21	35.51	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K9G5_9PHAE	2.030e-19	34.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KE09_9PHAE	2.640e-14	34.78	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JLQ6_9PHAE	1.390e-10	36.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig121081	contig	H-elongata_contig121081:1148..1558 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	411
Cds size	381
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929711.7351108-UTR-H-elongata_contig121081:1147..1177	1622929711.7351108-UTR-H-elongata_contig121081:1147..1177	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121081 1148..1177 +
1691679128.522568-UTR-H-elongata_contig121081:1147..1177	1691679128.522568-UTR-H-elongata_contig121081:1147..1177	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121081 1148..1177 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929711.7525735-CDS-H-elongata_contig121081:1177..1558	1622929711.7525735-CDS-H-elongata_contig121081:1177..1558	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121081 1178..1558 +
1691679128.5299463-CDS-H-elongata_contig121081:1177..1558	1691679128.5299463-CDS-H-elongata_contig121081:1177..1558	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121081 1178..1558 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig121081.1618.1	prot_H-elongata_contig121081.1618.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig121081 1178..1558 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig121081:1148..1558+
coding sequence from alignment at H-elongata_contig121081:1148..1558+

protein sequence of mRNA_H-elongata_contig121081.1618.1

>prot_H-elongata_contig121081.1618.1 ID=prot_H-elongata_contig121081.1618.1|Name=mRNA_H-elongata_contig121081.1618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MAVDGKRGIGRALNGLNVYDRLGYDVIGLQETRRSGRSAFNQAGYSVYCS
GECGSENGGKKGQGGVGLAIRTSITRAARPPKFISDRLLKVTLELRGRAK
AVTVFVVYAPNETQNASNKHAFWTSLD

mRNA from alignment at H-elongata_contig121081:1148..1558+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig121081.1618.1 ID=mRNA_H-elongata_contig121081.1618.1|Name=mRNA_H-elongata_contig121081.1618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig121081:1148..1558+ (Himanthalia elongata Himel1 dioecious)
ATCACAATTGCCATACACAACGTACGGACGATGGCGGTGGATGGGAAGCG
CGGAATTGGACGGGCGCTAAATGGTTTGAATGTATACGACCGACTGGGGT
ACGACGTTATCGGTCTGCAGGAGACCCGCCGCAGTGGACGTTCAGCCTTC
AATCAGGCTGGCTACTCGGTGTACTGCAGTGGTGAGTGCGGTAGCGAAAA
TGGCGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACTTCCA
TCACACGTGCTGCACGCCCACCGAAGTTTATCAGTGATCGCTTGCTAAAG
GTTACACTTGAACTACGGGGTCGAGCCAAGGCCGTTACGGTTTTTGTGGT
GTATGCCCCCAATGAAACACAGAATGCTAGCAATAAACATGCATTCTGGA
CGAGCTTGGAT

Coding sequence (CDS) from alignment at H-elongata_contig121081:1148..1558+

>mRNA_H-elongata_contig121081.1618.1 ID=mRNA_H-elongata_contig121081.1618.1|Name=mRNA_H-elongata_contig121081.1618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig121081:1148..1558+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGATGGGAAGCGCGGAATTGGACGGGCGCTAAATGGTTTGAA
TGTATACGACCGACTGGGGTACGACGTTATCGGTCTGCAGGAGACCCGCC
GCAGTGGACGTTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGT
GGTGAGTGCGGTAGCGAAAATGGCGGGAAGAAAGGGCAAGGTGGAGTAGG
GCTAGCTATTAGAACTTCCATCACACGTGCTGCACGCCCACCGAAGTTTA
TCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGCCAAG
GCCGTTACGGTTTTTGTGGTGTATGCCCCCAATGAAACACAGAATGCTAG
CAATAAACATGCATTCTGGACGAGCTTGGATATGGCGGTGGATGGGAAGC
GCGGAATTGGACGGGCGCTAAATGGTTTGAATGTATACGACCGACTGGGG
TACGACGTTATCGGTCTGCAGGAGACCCGCCGCAGTGGACGTTCAGCCTT
CAATCAGGCTGGCTACTCGGTGTACTGCAGTGGTGAGTGCGGTAGCGAAA
ATGGCGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACTTCC
ATCACACGTGCTGCACGCCCACCGAAGTTTATCAGTGATCGCTTGCTAAA
GGTTACACTTGAACTACGGGGTCGAGCCAAGGCCGTTACGGTTTTTGTGG
TGTATGCCCCCAATGAAACACAGAATGCTAGCAATAAACATGCATTCTGG
ACGAGCTTGGAT