mRNA_H-elongata_contig12091.1604.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: D8LBG3_ECTSI (2-keto-3-deoxy-6-phosphogluconate aldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG3_ECTSI) HSP 1 Score: 113 bits (283), Expect = 4.180e-28 Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 1
Query: 10 LIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
L++ A + T+ +VD AF +F+S+ +V RT++LG++SI GVST ++AA A++ G ILK +PA N+S RDIV A +PVV +GGVE + L+ Y K G SGFA+G+ +F+ E S ++ +AR F+
Sbjct: 113 LLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIVNAIKTSNIPVVISGGVEPDQLQAYVKSGASGFAVGRTLFEPEKSSAEIADRARCFL 251
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1T4WEE6_9GAMM (2-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax=Thiothrix eikelboomii TaxID=92487 RepID=A0A1T4WEE6_9GAMM) HSP 1 Score: 73.6 bits (179), Expect = 2.320e-13 Identity = 42/141 (29.79%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 4 SSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
S +++ A + T+ QV+ + G I + +++RT+EL ++S+ GV TA++ A++ G + LK FPA L + + + +A + A GGV+ + K G++GF IG A+++ D++ VK KA V
Sbjct: 53 SQVLIGAGTVLTVAQVEHVHQVGGRLIVSPNCDPAIISRTRELNMVSLPGVFTATECFAALQAGANGLKFFPASLLGLSGLKAL-KAVLPQEAQCFAVGGVDAPDFSDWLKAGITGFGIGTALYRPNDNLDSVKQKAAALV 192
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1V2M0G7_9FIRM (2-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax=Epulopiscium sp. SCG-B11WGA-EpuloA1 TaxID=1710701 RepID=A0A1V2M0G7_9FIRM) HSP 1 Score: 71.2 bits (173), Expect = 2.030e-12 Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 10 LIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSE 384
+++ A + T V A + GA +I + V + V+ TK++G ISI G T S+A +AI+YG DI+K FPA L A ++ + + +A GG++ ++K + LG++G IG + S+
Sbjct: 68 ILLGAGTVLTPKSVGQAIENGAEYIISPNVDKEVIEMTKKMGAISIPGALTPSEAVDAIKYGADIIKLFPAGTLGKAYIAALM--GPLNHIKFMAVGGIDKTNIKSFLDLGIAGVGIGGNLVNSK 190
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1M4WHV4_9FIRM (2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase n=2 Tax=Alkalibacter TaxID=274470 RepID=A0A1M4WHV4_9FIRM) HSP 1 Score: 70.5 bits (171), Expect = 4.360e-12 Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1
Query: 1 NSSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKY-----KARRF 423
+S +++ A + T QV A AGA FI + V + V+T+TKELG++SI G T S+ A +G DI+K FPA + + V+ + +P++A GG+ +++ + + G G IG + + I+D +Y +A+RF
Sbjct: 69 DSQVVLGAGTVLTEKQVCDAQNAGASFIISPNVSKEVITKTKELGMVSIPGAMTPSEVVAAHGFGADIVKLFPA-GMFGVSYLKAVRGPLR-HIPMMAVGGINPDNIAEFLEAGACGVGIGGNLVNLK-YIKDDRYDLISAEAKRF 211
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A7D7ZFW6_9RHOB (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Boseongicola sp. TaxID=1886600 RepID=A0A7D7ZFW6_9RHOB) HSP 1 Score: 69.7 bits (169), Expect = 6.590e-12 Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
++ A + T Q ++AG I + + V+ K + + S GV T ++ A+ +G D LK FPA + D ++A + + + V GGV E+ + K G SGF +G +++K DS+ D+ KA+ V
Sbjct: 57 LIGAGTVLTAQQAGQVYRAGGRLIVSPNCDQSVIEAAKTMDMQSFPGVLTPTECFNAVRWGADGLKVFPAFQMG-MDGLKALRAVLPVEIQVFMVGGVGPENFGDWLKAGASGFGLGSSLYKPGDSVADITSKAKETV 193
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A6I3FFG4_9ACTN (2-dehydro-3-deoxyphosphogluconate aldolase n=4 Tax=root TaxID=1 RepID=A0A6I3FFG4_9ACTN) HSP 1 Score: 68.2 bits (165), Expect = 2.730e-11 Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 67 AGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIG 363
AGA F+ + V + V+ TK+ GLISI GV++ ++ A+A+ +G DILK FPA +L + + + G+ +A GG+ VE + + +GV+GF +G
Sbjct: 82 AGAKFVISPHVSQEVIEATKQSGLISIPGVASPTEVADALRFGADILKFFPAASLGPNYLKAVCEP--FPGLNWMATGGISVETIPDWVAVGVTGFGVG 178
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A3M4RA93_PSESG (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=10 Tax=Pseudomonas TaxID=286 RepID=A0A3M4RA93_PSESG) HSP 1 Score: 68.2 bits (165), Expect = 2.860e-11 Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
++ A + T QV+ +AG I V+ KE GL GV+T ++A A+ G D+LK FPA +S A + + A + +G +V GG+ +++K + + GV GF +G +FK S+ +V +A +V
Sbjct: 63 LIGAGTVMTPEQVNLVKEAGGQVIVMPHSDAKVLRAAKEAGLFLSPGVATPNEAFAALAEGADVLKLFPAEQMSPAVVKAWL-AVLPIGTALVPVGGITPDNMKVFLEAGVKGFGLGSGLFKPGMSVAEVGERAHAYV 199
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: UPI0013745B87 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Providencia rettgeri TaxID=587 RepID=UPI0013745B87) HSP 1 Score: 67.8 bits (164), Expect = 4.370e-11 Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAG-GVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
I+ A + I QV G + I + + V+ TK+LG+IS GV T ++A AIEYG DILK +PA + F I+ G+ G G + L Y +G GF IG +++ SI DV A+ +
Sbjct: 70 IIGAGTVLRIDQVQKIKDIGGNIIISPNLNEEVIKLTKKLGMISCPGVYTVTEAFNAIEYGADILKFYPAEMIPPKIFNAILTVLPKDGLYFPVGGIGANSKQLNDYIHVGAKGFGIGGSLYNPNMSIDDVIDNAKNLI 208
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A238J0L2_9RHOB (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Boseongicola aestuarii TaxID=1470561 RepID=A0A238J0L2_9RHOB) HSP 1 Score: 66.6 bits (161), Expect = 9.610e-11 Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 1
Query: 13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKAR 417
++ A + T V KAG + + V + VV TK LG+ S GV T ++ A+++G D LK FPA + +A + V GGV E+ + K G +GF +G ++K D + D+ KAR
Sbjct: 57 LIGAGTVLTAKHVKRVRKAGGKLVVSPNVDKSVVKETKALGMHSFPGVLTPTECFNALKWGADGLKVFPAFXXXXXXXXAL-RAVLPSETQVYMVGGVGPENFANWLKAGANGFGLGSFLYKPGDPVADIAAKAR 190
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A7K1BIK4_9ACTN (2-dehydro-3-deoxyphosphogluconate aldolase n=2 Tax=root TaxID=1 RepID=A0A7K1BIK4_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 1.050e-10 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 49 VDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIG 363
V+ KAGA + + V+ TK GLIS+ GV+T ++ A+A+ +G DILK FPA +L + + G +A GG+ + + G+ K G+SGF +G
Sbjct: 77 VENGKKAGAKIVISPHTSEEVIKATKSAGLISVPGVATPTEIADALSFGADILKFFPASSLGIGFLKSV--RDPFPGNTWMATGGIALADVDGWVKAGISGFGLG 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12091.1604.1 >prot_H-elongata_contig12091.1604.1 ID=prot_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp NSSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITback to top mRNA from alignment at H-elongata_contig12091:7694..8119- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12091.1604.1 ID=mRNA_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig12091:7694..8119- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12091:7694..8119- >mRNA_H-elongata_contig12091.1604.1 ID=mRNA_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig12091:7694..8119- (Himanthalia elongata Himel1 dioecious)back to top |