mRNA_H-elongata_contig12091.1604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12091.1604.1
Unique NamemRNA_H-elongata_contig12091.1604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: D8LBG3_ECTSI (2-keto-3-deoxy-6-phosphogluconate aldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.180e-28
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   10 LIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
            L++ A  + T+ +VD AF    +F+S+      +V RT++LG++SI GVST ++AA A++ G  ILK +PA N+S    RDIV A     +PVV +GGVE + L+ Y K G SGFA+G+ +F+ E S  ++  +AR F+
Sbjct:  113 LLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIVNAIKTSNIPVVISGGVEPDQLQAYVKSGASGFAVGRTLFEPEKSSAEIADRARCFL 251          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1T4WEE6_9GAMM (2-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax=Thiothrix eikelboomii TaxID=92487 RepID=A0A1T4WEE6_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 2.320e-13
Identity = 42/141 (29.79%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    4 SSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
            S +++ A  + T+ QV+   + G   I +      +++RT+EL ++S+ GV TA++   A++ G + LK FPA  L  +  + + +A +       A GGV+      + K G++GF IG A+++  D++  VK KA   V
Sbjct:   53 SQVLIGAGTVLTVAQVEHVHQVGGRLIVSPNCDPAIISRTRELNMVSLPGVFTATECFAALQAGANGLKFFPASLLGLSGLKAL-KAVLPQEAQCFAVGGVDAPDFSDWLKAGITGFGIGTALYRPNDNLDSVKQKAAALV 192          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1V2M0G7_9FIRM (2-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax=Epulopiscium sp. SCG-B11WGA-EpuloA1 TaxID=1710701 RepID=A0A1V2M0G7_9FIRM)

HSP 1 Score: 71.2 bits (173), Expect = 2.030e-12
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   10 LIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSE 384
            +++ A  + T   V  A + GA +I +  V + V+  TK++G ISI G  T S+A +AI+YG DI+K FPA  L  A    ++    +  +  +A GG++  ++K +  LG++G  IG  +  S+
Sbjct:   68 ILLGAGTVLTPKSVGQAIENGAEYIISPNVDKEVIEMTKKMGAISIPGALTPSEAVDAIKYGADIIKLFPAGTLGKAYIAALM--GPLNHIKFMAVGGIDKTNIKSFLDLGIAGVGIGGNLVNSK 190          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A1M4WHV4_9FIRM (2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase n=2 Tax=Alkalibacter TaxID=274470 RepID=A0A1M4WHV4_9FIRM)

HSP 1 Score: 70.5 bits (171), Expect = 4.360e-12
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 NSSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKY-----KARRF 423
            +S +++ A  + T  QV  A  AGA FI +  V + V+T+TKELG++SI G  T S+   A  +G DI+K FPA  +    +   V+  +   +P++A GG+  +++  + + G  G  IG  +   +  I+D +Y     +A+RF
Sbjct:   69 DSQVVLGAGTVLTEKQVCDAQNAGASFIISPNVSKEVITKTKELGMVSIPGAMTPSEVVAAHGFGADIVKLFPA-GMFGVSYLKAVRGPLR-HIPMMAVGGINPDNIAEFLEAGACGVGIGGNLVNLK-YIKDDRYDLISAEAKRF 211          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A7D7ZFW6_9RHOB (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Boseongicola sp. TaxID=1886600 RepID=A0A7D7ZFW6_9RHOB)

HSP 1 Score: 69.7 bits (169), Expect = 6.590e-12
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
            ++ A  + T  Q    ++AG   I +    + V+   K + + S  GV T ++   A+ +G D LK FPA  +   D    ++A + + + V   GGV  E+   + K G SGF +G +++K  DS+ D+  KA+  V
Sbjct:   57 LIGAGTVLTAQQAGQVYRAGGRLIVSPNCDQSVIEAAKTMDMQSFPGVLTPTECFNAVRWGADGLKVFPAFQMG-MDGLKALRAVLPVEIQVFMVGGVGPENFGDWLKAGASGFGLGSSLYKPGDSVADITSKAKETV 193          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A6I3FFG4_9ACTN (2-dehydro-3-deoxyphosphogluconate aldolase n=4 Tax=root TaxID=1 RepID=A0A6I3FFG4_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 2.730e-11
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   67 AGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIG 363
            AGA F+ +  V + V+  TK+ GLISI GV++ ++ A+A+ +G DILK FPA +L     + + +     G+  +A GG+ VE +  +  +GV+GF +G
Sbjct:   82 AGAKFVISPHVSQEVIEATKQSGLISIPGVASPTEVADALRFGADILKFFPAASLGPNYLKAVCEP--FPGLNWMATGGISVETIPDWVAVGVTGFGVG 178          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A3M4RA93_PSESG (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=10 Tax=Pseudomonas TaxID=286 RepID=A0A3M4RA93_PSESG)

HSP 1 Score: 68.2 bits (165), Expect = 2.860e-11
Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
            ++ A  + T  QV+   +AG   I        V+   KE GL    GV+T ++A  A+  G D+LK FPA  +S A  +  + A + +G  +V  GG+  +++K + + GV GF +G  +FK   S+ +V  +A  +V
Sbjct:   63 LIGAGTVMTPEQVNLVKEAGGQVIVMPHSDAKVLRAAKEAGLFLSPGVATPNEAFAALAEGADVLKLFPAEQMSPAVVKAWL-AVLPIGTALVPVGGITPDNMKVFLEAGVKGFGLGSGLFKPGMSVAEVGERAHAYV 199          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: UPI0013745B87 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Providencia rettgeri TaxID=587 RepID=UPI0013745B87)

HSP 1 Score: 67.8 bits (164), Expect = 4.370e-11
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAG-GVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV 426
            I+ A  +  I QV      G + I +  +   V+  TK+LG+IS  GV T ++A  AIEYG DILK +PA  +    F  I+      G+     G G   + L  Y  +G  GF IG +++    SI DV   A+  +
Sbjct:   70 IIGAGTVLRIDQVQKIKDIGGNIIISPNLNEEVIKLTKKLGMISCPGVYTVTEAFNAIEYGADILKFYPAEMIPPKIFNAILTVLPKDGLYFPVGGIGANSKQLNDYIHVGAKGFGIGGSLYNPNMSIDDVIDNAKNLI 208          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A238J0L2_9RHOB (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Boseongicola aestuarii TaxID=1470561 RepID=A0A238J0L2_9RHOB)

HSP 1 Score: 66.6 bits (161), Expect = 9.610e-11
Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 1
Query:   13 IVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKAR 417
            ++ A  + T   V    KAG   + +  V + VV  TK LG+ S  GV T ++   A+++G D LK FPA          + +A +     V   GGV  E+   + K G +GF +G  ++K  D + D+  KAR
Sbjct:   57 LIGAGTVLTAKHVKRVRKAGGKLVVSPNVDKSVVKETKALGMHSFPGVLTPTECFNALKWGADGLKVFPAFXXXXXXXXAL-RAVLPSETQVYMVGGVGPENFANWLKAGANGFGLGSFLYKPGDPVADIAAKAR 190          
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Match: A0A7K1BIK4_9ACTN (2-dehydro-3-deoxyphosphogluconate aldolase n=2 Tax=root TaxID=1 RepID=A0A7K1BIK4_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-10
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   49 VDTAFKAGAHFISTKEVYRPVVTRTKELGLISITGVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAGGVEVEHLKGYGKLGVSGFAIG 363
            V+   KAGA  + +      V+  TK  GLIS+ GV+T ++ A+A+ +G DILK FPA +L     + +       G   +A GG+ +  + G+ K G+SGF +G
Sbjct:   77 VENGKKAGAKIVISPHTSEEVIKATKSAGLISVPGVATPTEIADALSFGADILKFFPASSLGIGFLKSV--RDPFPGNTWMATGGIALADVDGWVKAGISGFGLG 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12091.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG3_ECTSI4.180e-2841.732-keto-3-deoxy-6-phosphogluconate aldolase n=2 Tax... [more]
A0A1T4WEE6_9GAMM2.320e-1329.792-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax... [more]
A0A1V2M0G7_9FIRM2.030e-1232.802-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax... [more]
A0A1M4WHV4_9FIRM4.360e-1232.192-dehydro-3-deoxyphosphogluconate aldolase / (4S)-... [more]
A0A7D7ZFW6_9RHOB6.590e-1228.992-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A6I3FFG4_9ACTN2.730e-1137.372-dehydro-3-deoxyphosphogluconate aldolase n=4 Tax... [more]
A0A3M4RA93_PSESG2.860e-1131.162-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI0013745B874.370e-1133.092-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A238J0L2_9RHOB9.610e-1131.112-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A7K1BIK4_9ACTN1.050e-1035.242-dehydro-3-deoxyphosphogluconate aldolase n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12091contigH-elongata_contig12091:7694..8119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue7.8e-12
Seed eggNOG ortholog313628.LNTAR_07901
Preferred namedgoA
KEGG rclassRC00307,RC00308,RC00435
KEGG koko:K01625,ko:K01631
KEGG ReactionR00470,R01064,R05605
KEGG Pathwayko00030,ko00052,ko00630,ko01100,ko01120,ko01200,map00030,map00052,map00630,map01100,map01120,map01200
KEGG ModuleM00008,M00061,M00308,M00552,M00631
GOsGO:0003674,GO:0003824,GO:0005975,GO:0006082,GO:0008150,GO:0008152,GO:0008674,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019520,GO:0019583,GO:0019584,GO:0019752,GO:0032787,GO:0034192,GO:0034194,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.2-dehydro-3-deoxy-phosphogluconate aldolase activity
EggNOG OGsCOG0800@1,COG0800@2
EC4.1.2.14,4.1.2.21,4.1.3.42
COG Functional cat.G
BiGG ReactioniECIAI1_1343.ECIAI1_3871,iECO103_1326.ECO103_4465,iECO111_1330.ECO111_4520,iECO26_1355.ECO26_4889,iECW_1372.ECW_m3992,iEKO11_1354.EKO11_0010,iEcE24377_1341.EcE24377A_4202,iUMNK88_1353.UMNK88_4503,iWFL_1372.ECW_m3992,iYL1228.KPN_04096
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2-keto-3-deoxy-6-phosphogluconate aldolase
Ec32 orthologEc-27_004070.1
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.487995-CDS-H-elongata_contig12091:7693..81191622929710.487995-CDS-H-elongata_contig12091:7693..8119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12091 7694..8119 -
1691679128.0765007-CDS-H-elongata_contig12091:7693..81191691679128.0765007-CDS-H-elongata_contig12091:7693..8119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12091 7694..8119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12091.1604.1prot_H-elongata_contig12091.1604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12091 7694..8119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12091.1604.1

>prot_H-elongata_contig12091.1604.1 ID=prot_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
NSSLIVSAIKIFTIHQVDTAFKAGAHFISTKEVYRPVVTRTKELGLISIT
GVSTASKAAEAIEYGTDILKAFPAINLSNADFRDIVQASVMLGVPVVAAG
GVEVEHLKGYGKLGVSGFAIGKAMFKSEDSIRDVKYKARRFV
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mRNA from alignment at H-elongata_contig12091:7694..8119-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12091.1604.1 ID=mRNA_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig12091:7694..8119- (Himanthalia elongata Himel1 dioecious)
AACTCAAGTCTGATCGTAAGTGCCATTAAAATATTCACGATTCACCAGGT GGACACGGCATTCAAGGCCGGCGCACACTTTATCAGCACGAAGGAAGTAT ATCGGCCAGTTGTTACACGTACGAAGGAGCTCGGGTTAATAAGTATTACG GGGGTGTCCACCGCTTCGAAGGCAGCCGAAGCCATCGAATATGGTACAGA CATCCTCAAGGCATTCCCTGCGATAAACCTTTCTAACGCAGACTTTCGAG ATATTGTTCAAGCTTCGGTAATGCTGGGTGTACCTGTGGTCGCCGCGGGA GGGGTGGAAGTTGAACATTTGAAGGGGTACGGCAAGTTGGGCGTGTCAGG CTTCGCCATTGGCAAGGCAATGTTCAAGTCCGAGGACAGTATACGCGACG TGAAGTACAAGGCGCGTAGATTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig12091:7694..8119-

>mRNA_H-elongata_contig12091.1604.1 ID=mRNA_H-elongata_contig12091.1604.1|Name=mRNA_H-elongata_contig12091.1604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig12091:7694..8119- (Himanthalia elongata Himel1 dioecious)
AACTCAAGTCTGATCGTAAGTGCCATTAAAATATTCACGATTCACCAGGT
GGACACGGCATTCAAGGCCGGCGCACACTTTATCAGCACGAAGGAAGTAT
ATCGGCCAGTTGTTACACGTACGAAGGAGCTCGGGTTAATAAGTATTACG
GGGGTGTCCACCGCTTCGAAGGCAGCCGAAGCCATCGAATATGGTACAGA
CATCCTCAAGGCATTCCCTGCGATAAACCTTTCTAACGCAGACTTTCGAG
ATATTGTTCAAGCTTCGGTAATGCTGGGTGTACCTGTGGTCGCCGCGGGA
GGGGTGGAAGTTGAACATTTGAAGGGGTACGGCAAGTTGGGCGTGTCAGG
CTTCGCCATTGGCAAGGCAATGTTCAAGTCCGAGGACAGTATACGCGACG
TGAAGTACAAGGCGCGTAGATTTGTTAACTCAAGTCTGATCGTAAGTGCC
ATTAAAATATTCACGATTCACCAGGTGGACACGGCATTCAAGGCCGGCGC
ACACTTTATCAGCACGAAGGAAGTATATCGGCCAGTTGTTACACGTACGA
AGGAGCTCGGGTTAATAAGTATTACGGGGGTGTCCACCGCTTCGAAGGCA
GCCGAAGCCATCGAATATGGTACAGACATCCTCAAGGCATTCCCTGCGAT
AAACCTTTCTAACGCAGACTTTCGAGATATTGTTCAAGCTTCGGTAATGC
TGGGTGTACCTGTGGTCGCCGCGGGAGGGGTGGAAGTTGAACATTTGAAG
GGGTACGGCAAGTTGGGCGTGTCAGGCTTCGCCATTGGCAAGGCAATGTT
CAAGTCCGAGGACAGTATACGCGACGTGAAGTACAAGGCGCGTAGATTTG
TT
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