mRNA_H-elongata_contig120739.1596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120739.1596.1
Unique NamemRNA_H-elongata_contig120739.1596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120739.1596.1 vs. uniprot
Match: A0A6H5JE22_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE22_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 4.630e-57
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 1 
Query:    1 VMGDKSRRAIYDERMGDPTFQDRAERRR----GAQSAESRGQRWSRAGG-GSARMPPILRAFEFATHPRMLLVGVPLACVGYMVFGNHETEEPAAITKVDAWLNPATNQWETPAPWNEEFRKRRHLVQRVDRSIVRESARR 408
            VMGDKS+RA+YDERM DP F+ R E R+    G + A   G R S A   G  RMPPILRAFEFATHPR+L+VG+PLACVGYM+FG+HE+E P +  KVDAWLNP+T +WETPAPW+EEFRKRRHLVQ+VDRSIV E+ +R
Sbjct:  106 VMGDKSKRALYDERMADPAFRHRTEYRQRQGGGPEGAHRNGGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGDHESEVPGSSVKVDAWLNPSTQRWETPAPWDEEFRKRRHLVQKVDRSIVHEAGKR 246
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BLAST of mRNA_H-elongata_contig120739.1596.1 vs. uniprot
Match: D7G772_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G772_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-18
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 VMGDKSRRAIYDERMGDPTFQDRAERRR---GAQSAESR--GQRWSRAGGGSARMPPILRAFEFATHPRMLLVGVPLACV 225
            VMGDKS+RA+YDERM DP F+ R E R+   GA     R  G+R      G  RMPPILRAFE ATHPR+L+VG+PLACV
Sbjct:   59 VMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGAQRTGGRRSYAPPRGHTRMPPILRAFELATHPRVLMVGIPLACV 138
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BLAST of mRNA_H-elongata_contig120739.1596.1 vs. uniprot
Match: A0A4D9DC63_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC63_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.840e-8
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = 1 
Query:    1 VMGDKSRRAIYDERM-----------GDPTFQDRAERRRGAQSAESRGQRWSRAGGGSARMPPILRAF---EFATHPRMLLVGVPLACVGYMVFGNHETEEPAAITKVDAWLNPATNQWETPAPWNEEFR 348
            V+ D  +R I DE +           GD  F DR    R  +S        SR GG S+      RAF   E A  PR+L++G+ LA + Y+  G  E    ++   V AW N  T +WETPAPWN ++R
Sbjct:   61 VLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRSPPG-----SRKGGFSSS-----RAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDPGHSSDLLVPAWYNQRTKRWETPAPWNPDYR 180
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BLAST of mRNA_H-elongata_contig120739.1596.1 vs. uniprot
Match: A0A7S1E0B4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0B4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.840e-7
Identity = 29/88 (32.95%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:  151 PPILRAF-EFATHPRMLLVGVPLACVGYMVFGNHETEEPAAI-----TKVDAWLNPATNQWETPAPWNEEFRKRRHLVQRVDRSIVRE 396
            PP  + F +    PR LL+G      G  +F +   +E   I     +KV+AW NP + QWE PAPW+ E+++ +  +  V R  V++
Sbjct:   10 PPATQGFWDIFFRPRNLLIGATFGVFGGFLFRSFFRDERRHINLQGASKVEAWKNPKSGQWELPAPWDAEYKRLKPTLHFVPREKVQQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120739.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE22_9PHAE4.630e-5766.67J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7G772_ECTSI2.570e-1860.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A4D9DC63_9STRA2.840e-835.38J domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A7S1E0B4_9STRA5.840e-732.95Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120739contigH-elongata_contig120739:63..1962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog2880.D7G772
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size411
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120739.1596.1prot_H-elongata_contig120739.1596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120739 66..1962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.537506-UTR-H-elongata_contig120739:62..651622929709.537506-UTR-H-elongata_contig120739:62..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120739 63..65 +
1691679127.7121983-UTR-H-elongata_contig120739:62..651691679127.7121983-UTR-H-elongata_contig120739:62..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120739 63..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.5533097-CDS-H-elongata_contig120739:65..1951622929709.5533097-CDS-H-elongata_contig120739:65..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 66..195 +
1691679127.7231-CDS-H-elongata_contig120739:65..1951691679127.7231-CDS-H-elongata_contig120739:65..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 66..195 +
1622929709.5846531-CDS-H-elongata_contig120739:566..6581622929709.5846531-CDS-H-elongata_contig120739:566..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 567..658 +
1691679127.73562-CDS-H-elongata_contig120739:566..6581691679127.73562-CDS-H-elongata_contig120739:566..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 567..658 +
1622929709.599389-CDS-H-elongata_contig120739:1098..11751622929709.599389-CDS-H-elongata_contig120739:1098..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1099..1175 +
1691679127.7456741-CDS-H-elongata_contig120739:1098..11751691679127.7456741-CDS-H-elongata_contig120739:1098..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1099..1175 +
1622929709.6130087-CDS-H-elongata_contig120739:1539..16091622929709.6130087-CDS-H-elongata_contig120739:1539..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1540..1609 +
1691679127.75583-CDS-H-elongata_contig120739:1539..16091691679127.75583-CDS-H-elongata_contig120739:1539..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1540..1609 +
1622929709.6282947-CDS-H-elongata_contig120739:1923..19621622929709.6282947-CDS-H-elongata_contig120739:1923..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1924..1962 +
1691679127.7643442-CDS-H-elongata_contig120739:1923..19621691679127.7643442-CDS-H-elongata_contig120739:1923..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120739 1924..1962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120739.1596.1

>prot_H-elongata_contig120739.1596.1 ID=prot_H-elongata_contig120739.1596.1|Name=mRNA_H-elongata_contig120739.1596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MGDKSRRAIYDERMGDPTFQDRAERRRGAQSAESRGQRWSRAGGGSARMP
PILRAFEFATHPRMLLVGVPLACVGYMVFGNHETEEPAAITKVDAWLNPA
TNQWETPAPWNEEFRKRRHLVQRVDRSIVRESARR*
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mRNA from alignment at H-elongata_contig120739:63..1962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120739.1596.1 ID=mRNA_H-elongata_contig120739.1596.1|Name=mRNA_H-elongata_contig120739.1596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1900bp|location=Sequence derived from alignment at H-elongata_contig120739:63..1962+ (Himanthalia elongata Himel1 dioecious)
GTGATGGGTGACAAGTCCAGGCGCGCGATCTACGATGAGAGAATGGGCGA
TCCTACCTTCCAAGACAGGGCAGAGCGGAGACGAGGGGCTCAGAGCGCCG
AGAGCAGAGGGCAGCGTTGGTCAAGGGCTGGGGGTGCGTAACCTCGTGTG
TCGTCCAAACCCCCGCAGCCCACCGCGACAGAATATGCGGCAGAAGAGAA
GTGGCGGCGGCACTACCGAGGAGAACGTATTTGCCGCTCGCTTGACATGC
GTATCGGATACGTTTCTTAATTTTTTATAGTTAGTAATTGTCGGTGTCTT
CGTTGGCCGTACCTTAGTGATGACCATAGTACGGCAATCGAAAACCCTGT
TCTGTACATATATACCCTTGGTTTTTTGTGCAAGTTGCTGTGGACGAGCC
TCTCACCGTCGATGCATTTGACTGCCCCAACGGTCGCTCTTTTGGTTTCC
TCACGAAGTTTTCCGGCGTTTTTTTTTTTCCTGAATGAAATAATGGCGGC
GCAGGAGGAAGCGCACGGATGCCACCCATCCTGCGGGCCTTTGAGTTCGC
GACGCACCCAAGAATGCTATTGGTTGGCGTGCCTCTTGCCTGCGTGGTGC
GTACCTCCGCTGGTACATCTCGCATCTCGCCTGTAGTGGATCAGCTGTGA
CGCATTGGATATGTGACACGCGGACGACGTTGAGCTTCCGGAGCATCAAT
CGTTTGTTGTACCCCCCGATTATTGAAGGTGGTTCTGTTTTTTGTTCATC
GGAGTGTTGGTTTAAATTACCCATATAGTCTACAAACTGTCCGCAAATTA
GCTGAAAAAATTTAGTCCACGAGCTCAACTTTTGGTGAAAAATTATCTAC
GGTGAATCATTATATGTATTGATGTAAGTAGGCGCGTCGTGCAATCGACT
TCGGCGCGAACGACAGGGTTCGCTTGGGGAAAAGCAGAAAAACACGCCTA
TACACACTCCGATTGATCTGACTCAAGATTCACTTCGCAGCGACCCCTCG
AACCCTCGTGTGTTTTTCGCGTGAAACGAAGCACAGGGATACATGGTATT
TGGCAACCACGAAACCGAAGAGCCGGCCGCGATTACGAAGGTCGATGCGT
GGCTGAATCCCGCGTGAGTCCCGGTGACGCAAGCGCGGCGTCTTGTTGGC
GCAGAACAGTTGTGTACAGAGGCGGCGACGGCTCATCGTGTAGATCAGGT
AAATTACCCCGCCGCCACCGAGAACATTCGAAGTCGCATCGATCTGCGCG
ATAGGTTGTAAGAGAAGGCTTAGTTGTTTGGACGTGGCGGACAGAGATTT
CGATCGCTGTGATAGTTTGAAGGGCTGAGTTGATCCCAGCGCCGGCGAGT
GTGAAGTGCTTCGAACGGCAGCAGCCAACCGTAAACGAACTCCACGCAAC
CTTGTTTTCGCTCGACCGCTCCACTTCAACTTACGCGTCTGCCTGCCACC
ATGCTGATTGGTTGGCTGTCGGAGCAGCACGAACCAATGGGAAACTCCCG
CGCCTTGGAACGAAGAGTTCCGAAAGCGACGACATCTGGTGCAGAGGGTG
AGATGGCTTTGTCGAGGGATGCTTACTATGTCGTTTCGCCCTCTCTAGCT
CCGACTCCAGCGCTCGGGAAGGCGTTACCTAAAATCGTTTATTTTTATTT
TTATCAAGATAATTATTCCTTAAGTTGTGAAGTAGGCGTCGACACCCCTG
TATGAGAATCATGCAGTTGATTGGCCGTCATTTCGTCACCCGAATTGTTT
TTTGTAATGTCCATTAATGAGAAAATCTGGGCAGGATGGAGATATTGGCC
CTCCCTAGTAAATCATATTTTGTTTTCCCCGCGTGTTGCTCCTCAAATCC
GCCGCGAGTAGGTGGATCGGAGCATCGTGCGCGAATCGGCACGGAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig120739:63..1962+

>mRNA_H-elongata_contig120739.1596.1 ID=mRNA_H-elongata_contig120739.1596.1|Name=mRNA_H-elongata_contig120739.1596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig120739:63..1962+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGACAAGTCCAGGCGCGCGATCTACGATGAGAGAATGGGCGATCC
TACCTTCCAAGACAGGGCAGAGCGGAGACGAGGGGCTCAGAGCGCCGAGA
GCAGAGGGCAGCGTTGGTCAAGGGCTGGGGATGGGTGACAAGTCCAGGCG
CGCGATCTACGATGAGAGAATGGGCGATCCTACCTTCCAAGACAGGGCAG
AGCGGAGACGAGGGGCTCAGAGCGCCGAGAGCAGAGGGCAGCGTTGGTCA
AGGGCTGGGGGAGGAAGCGCACGGATGCCACCCATCCTGCGGGCCTTTGA
GTTCGCGACGCACCCAAGAATGCTATTGGTTGGCGTGCCTCTTGCCTGCG
TGGAGGAAGCGCACGGATGCCACCCATCCTGCGGGCCTTTGAGTTCGCGA
CGCACCCAAGAATGCTATTGGTTGGCGTGCCTCTTGCCTGCGTGGGATAC
ATGGTATTTGGCAACCACGAAACCGAAGAGCCGGCCGCGATTACGAAGGT
CGATGCGTGGCTGAATCCCGCGGATACATGGTATTTGGCAACCACGAAAC
CGAAGAGCCGGCCGCGATTACGAAGGTCGATGCGTGGCTGAATCCCGCCA
CGAACCAATGGGAAACTCCCGCGCCTTGGAACGAAGAGTTCCGAAAGCGA
CGACATCTGGTGCAGAGGCACGAACCAATGGGAAACTCCCGCGCCTTGGA
ACGAAGAGTTCCGAAAGCGACGACATCTGGTGCAGAGGGTGGATCGGAGC
ATCGTGCGCGAATCGGCACGGAGATAAGTGGATCGGAGCATCGTGCGCGA
ATCGGCACGGAGATAA
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