mRNA_H-elongata_contig12064.1583.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: D8LFT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT9_ECTSI) HSP 1 Score: 403 bits (1035), Expect = 1.030e-132 Identity = 209/266 (78.57%), Postives = 229/266 (86.09%), Query Frame = 2
Query: 125 VSEKPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDPKSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARLMSLG 922
+SE+PSF ASLL GGMAGTAVDVAL+PLDTIKTRLQS GF K+GG RGVYNG+SAAAVGSAPGAALFFSSYEAAKHA+DP SP + MAAAS+AE++ACLVRVPTENVKQKMQAGLHG+A+ T+ +ILK SG +GFY GYLTTV+REIPFSFIQFPIYE LK A RG LE YEAA CGSVSGA AA VTTP+DVVKTR+MLG DKHG YRGL TF+RVYTEEGAAALMSGV PRVTWI IGGFVFFGVYE +K LM LG
Sbjct: 1 MSEQPSFVASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMMGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAKRRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGLG 266
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A835YJ97_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ97_9STRA) HSP 1 Score: 338 bits (868), Expect = 1.040e-107 Identity = 178/266 (66.92%), Postives = 209/266 (78.57%), Query Frame = 2
Query: 134 KPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAM-DPKSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVT---SILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARLMSL 919
+PSF +L+ GG+AGT+VDVALFPLDTIKTRLQSS GF KAGGF+GVYNG+SAAAVGSAPGAA FFS+YE K + DP +P++ MAAAS AE +ACLVRVPTENVKQKMQAG+ S+SS V SIL SG GFYAGY+TT+MREIPFS IQFP+YE +K RG + SY+AA CGS+SGA A +TTP DVVKTR+MLG DKHG Y+G++ TFQR+ +EGAAAL G+VPRV WI IGGFVFFG YEASK L +
Sbjct: 4 QPSFVLALVSGGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYNGLSAAAVGSAPGAAAFFSTYEGLKVRLGDPSAPSTHMAAASGAEIVACLVRVPTENVKQKMQAGVGTSSSSAVATCRSILSASGARGFYAGYMTTIMREIPFSLIQFPLYERMKAVWGRRRGAPVHSYQAAVCGSLSGAFAGALTTPFDVVKTRLMLGADKHGLPYKGMVPTFQRIVADEGAAALFGGIVPRVMWIGIGGFVFFGAYEASKRTLAGV 269
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A7S2Y3T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3T2_9STRA) HSP 1 Score: 322 bits (824), Expect = 4.250e-101 Identity = 171/268 (63.81%), Postives = 204/268 (76.12%), Query Frame = 2
Query: 119 MTVSEKPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKH----AMDPK-SPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGK-DKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKA 904
M EK SF +LL GG AGT+VDVALFPLDTIKTRLQSS GF KAGGFRG+Y G+SAAA GSAPGAALFFSSYEA+K D K +P M +AS+ E++ACLVRVPTE VKQ+MQ G +GS V++I+KT GP GFY GYLTTV REIPFSFIQFP+YE LK + +GK + ++A CGS+SG IAAG+TTP+DVVKTR+MLG+ D HG Y G+L T Q++Y +EG L +G PRVTWISIGGFVFFG YEA+K+
Sbjct: 1 MVSQEKNSFLVNLLSGGCAGTSVDVALFPLDTIKTRLQSSEGFVKAGGFRGIYRGLSAAAAGSAPGAALFFSSYEASKEWGTKTFDEKYAPLVHMGSASVGETVACLVRVPTEVVKQRMQTGQYGSFREAVSTIMKTEGPGGFYTGYLTTVAREIPFSFIQFPMYEGLKKYWSEWQGKEVGPSQSALCGSISGGIAAGITTPLDVVKTRLMLGQADLHGVKYEGMLSTLQKIYVQEGMPKLFAGFSPRVTWISIGGFVFFGSYEAAKS 268
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A1V9ZD58_9STRA (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD58_9STRA) HSP 1 Score: 301 bits (772), Expect = 1.990e-93 Identity = 157/268 (58.58%), Postives = 192/268 (71.64%), Query Frame = 2
Query: 125 VSEKPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDPK------SPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARL 910
S SF SL+ GG+AGT+VDVALFPLDTIKTRLQSS GF KAGGF+GVY G+SAAA GSAPGAALFFS+YE +K + K SP M+AA+ E+ ACLVRVPTE VKQ MQ G ++ ++ +G GFY GY + + REIPFSFIQFP++E LK + RG+++ ++ A CGS+SG IAA +TTP+DVVKTR+MLGKD HG YRG+ TF RVYT+EG L SG+ PR WISIGGFVFFG YE++ A L
Sbjct: 4 TSSSKSFFTSLIAGGIAGTSVDVALFPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETSKEVLQNKLPHLSNSPLIHMSAAACGETAACLVRVPTEIVKQNMQTGALSGFQHSIKTLYAANGIAGFYRGYWSMLAREIPFSFIQFPLWEGLKATWSKQRGEQVSPFQGAICGSISGGIAASITTPLDVVKTRLMLGKDAHGVEYRGMKDTFMRVYTDEGWQTLFSGIKPRTMWISIGGFVFFGAYESASAFL 271
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A7S1UH46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH46_9STRA) HSP 1 Score: 298 bits (762), Expect = 8.640e-92 Identity = 158/260 (60.77%), Postives = 193/260 (74.23%), Query Frame = 2
Query: 152 SLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDPK---SPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLK-VKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARLMSL 919
SL+ GG+AGT VDV LFPLDTIKTRLQ+ GF K+GGF G++ G+SAAAVGSAPGA+LFF SYE AK ++P+ +P + MAAAS+ E AC+VRVPTE +KQ+MQA + +A + ++L T G LG + GY +TV REIPFS IQFP+YE LK V A+ L YE+A CGSVSGA +A VTTP+DVVKTR+MLG DK G AY G+ TF+RV +EGAAAL GV PRV WISIGGF FFG YE +KA LM +
Sbjct: 25 SLISGGVAGTTVDVVLFPLDTIKTRLQAPEGFMKSGGFNGLFKGVSAAAVGSAPGASLFFMSYETAKQNLEPRMESAPVAHMAAASLGEVAACVVRVPTEIIKQRMQANMFPTAQGALRNVLDTEGVLGLWRGYGSTVAREIPFSLIQFPLYEHLKKVWAASKASGELRPYESALCGSVSGAFSAAVTTPLDVVKTRLMLGADKAGVAYDGMASTFRRVVADEGAAALFKGVQPRVMWISIGGFFFFGAYEGTKASLMGM 284
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A5D6XPF9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPF9_9STRA) HSP 1 Score: 296 bits (758), Expect = 2.490e-91 Identity = 157/256 (61.33%), Postives = 189/256 (73.83%), Query Frame = 2
Query: 143 FSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDP------KSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYE 892
F SLLGG +AGT+VD+ALFPLDTIKTRLQS+ GFFKAGGFRGVY+G+SAAA GSAPG A+FFS+YE +K+A+ SP + MAAA+ E+ ACLVRVPTE VKQ+MQ G++ S VTSI G LGFY GY + + REIPFSFIQFP++E LK + G + S + A CGS++G +AA +TTP+DVVKTR+MLGKD G Y+G L TF RVY E G A L SGV PR WISIGGFVFFG+YE
Sbjct: 15 FLPSLLGGAVAGTSVDIALFPLDTIKTRLQSADGFFKAGGFRGVYSGLSAAAAGSAPGGAMFFSTYETSKNAIGKYFPEKKHSPFAHMAAAACGETAACLVRVPTEIVKQRMQTGMYKSIGEAVTSIRAAEGLLGFYRGYFSMIAREIPFSFIQFPLWEGLKSQ-----GSPVSSLQGAICGSIAGGVAASITTPLDVVKTRLMLGKDAQGVPYQGTLSTFSRVYQEGGVARLFSGVGPRTMWISIGGFVFFGMYE 265
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A067C9P7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C9P7_SAPPC) HSP 1 Score: 295 bits (756), Expect = 4.910e-91 Identity = 157/263 (59.70%), Postives = 189/263 (71.86%), Query Frame = 2
Query: 140 SFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDP------KSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARL 910
SF SL+ GG+AGT+VDVALFPLDTIKTRLQSS GF KAGGF+GVY G+SAAA GSAPGAALFFS+YE AK A+ SP M AA+ E+ ACLVRVPTE VKQ MQ G ++ ++ +G GFY GY + + REIPFSFIQFP++E LK + +G+++ + + A CGS+SG IAA +TTP+DVVKTR+MLGKD +G YRG+ TF RVYTEEG L SGV PR WISIGGFVFFG YE + A L
Sbjct: 10 SFFTSLVAGGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETAKEALQTHLPHMANSPFIHMGAAACGETAACLVRVPTEIVKQNMQTGALNGFQHSIKTLHAANGIAGFYRGYWSMLAREIPFSFIQFPLWEGLKATWSAKQGEQVSALQGALCGSISGGIAASITTPLDVVKTRLMLGKDANGVEYRGMKDTFMRVYTEEGWQRLFSGVKPRTMWISIGGFVFFGAYETASASL 272
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A024U5F9_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5F9_9STRA) HSP 1 Score: 292 bits (748), Expect = 7.430e-90 Identity = 155/263 (58.94%), Postives = 186/263 (70.72%), Query Frame = 2
Query: 140 SFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDP------KSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARL 910
SF SL+ GGMAGT VDVAL+PLDTIKTRLQSS GF KAGGF+GVY G+SAAA GSAPGAALFFS+YE K + SP MA+A++ E+ CLVRVPTE VKQ +Q G S ++ SI TSG GFY GY + + REIPFSFIQFP++E +K + +G+ + + A CGS+SG AA VTTP+DV+KTR+MLGKD G YRG+ F RVYT+EG L SGV PR TWI+IGGFVFFGVYE + A L
Sbjct: 11 SFLTSLIAGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETTKRFLQQLQPHLADSPVVHMASAAMGETAGCLVRVPTEIVKQNLQTGAFQSFQESIRSIYGTSGVAGFYRGYWSLLAREIPFSFIQFPLWEGMKTAWGHHQGEIVSPVQGAVCGSISGGFAAFVTTPLDVIKTRLMLGKDAQGVEYRGMRDAFTRVYTQEGWQTLFSGVKPRTTWITIGGFVFFGVYEQASATL 273
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A8K1CHB3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHB3_PYTOL) HSP 1 Score: 292 bits (748), Expect = 9.390e-90 Identity = 152/256 (59.38%), Postives = 186/256 (72.66%), Query Frame = 2
Query: 143 FSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAM------DPKSPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYE 892
F ASLLGG +AGT+VD+ALFPLDTIKTRLQS+ GFFKAGGFRGVY+G+SAAA GSAPG A+FFS+YE +K A+ +SP + M AA++ E ACLVRVPTE VKQ+MQ G++ S + I T G GFY GY + + REIPFSFIQFP++E LK + + + + S + A CGS++G AA +TTP+DVVKTR+MLGKD G Y G + TF RVY EEG L SGV PR WISIGGFVFFG+YE
Sbjct: 17 FLASLLGGAVAGTSVDIALFPLDTIKTRLQSAEGFFKAGGFRGVYSGLSAAAAGSAPGGAMFFSAYETSKKAIAATFPEHKQSPFAHMGAAAVGEMSACLVRVPTEIVKQRMQTGVYSSLQGAIVGIRTTEGVFGFYRGYWSMIAREIPFSFIQFPLWEGLKNQWSKQQNAPVSSLQGAICGSIAGGCAASITTPLDVVKTRLMLGKDAKGVPYTGTVDTFTRVYREEGVKRLFSGVGPRTMWISIGGFVFFGMYE 272
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Match: A0A7S1EJZ1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJZ1_HEMAN) HSP 1 Score: 291 bits (744), Expect = 2.790e-89 Identity = 156/270 (57.78%), Postives = 187/270 (69.26%), Query Frame = 2
Query: 116 RMTVSEKPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRGVYNGISAAAVGSAPGAALFFSSYEAAKHAMDPK-----SPASQMAAASIAESIACLVRVPTENVKQKMQAGLHGSASSTVTSILKTSGPLGFYAGYLTTVMREIPFSFIQFPIYEWLKVKLANIRGKRLESYEAASCGSVSGAIAAGVTTPIDVVKTRIMLGKDKHGTAYRGLLQTFQRVYTEEGAAALMSGVVPRVTWISIGGFVFFGVYEASKARL 910
RM ++ SF +L+ GG AGTAVDVALFP+DTIKTRLQ+ GF K+GGFRG+YNG+++AA GSAPGAALFFS+YE K M + PA M A+S E AC+VRVPTENVKQKMQAG + ++SI G +GFY GY+ TV REIPF IQFP+YE LK + AN +G ++A CGS++G IAA TTP+DVVKTR+MLGKD G AY G+ TF RVY E G L +GV PR WISIGG VFFG YE SK L
Sbjct: 4 RMGGDKETSFRVALVAGGAAGTAVDVALFPIDTIKTRLQAPEGFLKSGGFRGIYNGLASAAAGSAPGAALFFSTYEMMKKRMMDRIEERYHPACYMGASSCGEIAACMVRVPTENVKQKMQAGHFATNGEALSSIWNARGMMGFYQGYMMTVFREIPFVLIQFPLYEGLKKRWANHQGHASTPLQSALCGSLAGGIAAAATTPLDVVKTRLMLGKDSEGVAYDGIANTFSRVYAEGGVGRLFAGVGPRTMWISIGGCVFFGAYEKSKQLL 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12064.1583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12064.1583.1 >prot_H-elongata_contig12064.1583.1 ID=prot_H-elongata_contig12064.1583.1|Name=mRNA_H-elongata_contig12064.1583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp MTVSEKPSFSASLLGGGMAGTAVDVALFPLDTIKTRLQSSAGFFKAGGFRback to top mRNA from alignment at H-elongata_contig12064:876..5840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12064.1583.1 ID=mRNA_H-elongata_contig12064.1583.1|Name=mRNA_H-elongata_contig12064.1583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4965bp|location=Sequence derived from alignment at H-elongata_contig12064:876..5840+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12064:876..5840+ >mRNA_H-elongata_contig12064.1583.1 ID=mRNA_H-elongata_contig12064.1583.1|Name=mRNA_H-elongata_contig12064.1583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig12064:876..5840+ (Himanthalia elongata Himel1 dioecious)back to top |