mRNA_H-elongata_contig120572.1578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120572.1578.1
Unique NamemRNA_H-elongata_contig120572.1578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A835YRJ7_9STRA (Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ7_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.550e-46
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            GRDVHE   LAHYA+ACTDITF+FPFG+SELQGVAARG YDLTQHQEASGK MEYFDE TK ++VPHVIEPSLGVDRLFLA++ SAYHED
Sbjct:  292 GRDVHEAHKLAHYARACTDITFRFPFGQSELQGVAARGAYDLTQHQEASGKGMEYFDEATKRKYVPHVIEPSLGVDRLFLALLTSAYHED 381
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A6U1N9R4_9STRA (Glycine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N9R4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.640e-43
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            G +VH D  LAHYA+ACTDITFKFPFGESELQG+AARGCYDLTQHQE SGKS+EY  E TK++F+PHVIEPSLGVDRL LA++ SAYH+D
Sbjct:  292 GTEVHADDKLAHYARACTDITFKFPFGESELQGIAARGCYDLTQHQEGSGKSLEYQVEGTKDKFLPHVIEPSLGVDRLLLALICSAYHKD 381
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A7R9YDS6_9STRA (Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDS6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.080e-42
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            G+DVHED  LAHYA+ACTDITFKFPFGESELQG+AARG YDL  HQ +SGKS EYFDE  K ++VPHVIEPS+GV+RLFLA++ SAYHED
Sbjct:  327 GKDVHEDCDLAHYARACTDITFKFPFGESELQGIAARGDYDLNAHQGSSGKSQEYFDEANKRKYVPHVIEPSIGVERLFLALVCSAYHED 416
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: W7TM99_9STRA (Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM99_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.750e-41
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            GRDVH  G LAHYAKACTDI F+FPFG+ ELQG+AARG YDLTQHQ +SGKSMEYFDE  K R+VPHVIEPS+GVDRLFLA++ SAY ED
Sbjct:  379 GRDVHLKGDLAHYAKACTDIVFRFPFGQVELQGIAARGDYDLTQHQTSSGKSMEYFDEANKRRYVPHVIEPSIGVDRLFLALICSAYAED 468
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A7S3AL73_9EUKA (Glycine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AL73_9EUKA)

HSP 1 Score: 143 bits (360), Expect = 7.900e-41
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    7 DVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            DVH    LAHYA+ACTDI FKFPFG  ELQGVAARGC+DLTQH  ASGKSMEY+D+  KE++VPHVIEPS+GVDRL LA++ SAY ED
Sbjct:   42 DVHPSHKLAHYARACTDIMFKFPFGTQELQGVAARGCFDLTQHAGASGKSMEYYDDVRKEKYVPHVIEPSIGVDRLMLAVLCSAYKED 129
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A7R9WRX3_9STRA (Glycine--tRNA ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRX3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.900e-41
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            G DVHE  SLAHYA+ACTD+TF+FPFGE EL G+AARG +DLTQH E SGKS+++FD++TKE+++PH IEPSLGVDRL LA++ SAY ED
Sbjct:   83 GWDVHEGDSLAHYARACTDVTFRFPFGEQELMGIAARGNFDLTQHSEGSGKSLDFFDDQTKEKYIPHCIEPSLGVDRLMLALICSAYAED 172
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A1J4XFE5_9BACT (Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacterium CG1_02_43_26 TaxID=1805421 RepID=A0A1J4XFE5_9BACT)

HSP 1 Score: 147 bits (372), Expect = 2.610e-40
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    4 RDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            ++VH    LAHYAKACTDI F+FPFG+ ELQG+AARG YDL QHQE SGKS+EYFDE TKER+VPHVIEPS+GVDRLFLA+M SAY ED
Sbjct:  301 KEVHSVDKLAHYAKACTDIVFQFPFGKQELQGIAARGNYDLMQHQEHSGKSLEYFDEITKERYVPHVIEPSIGVDRLFLALMCSAYQED 389
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BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A7S0CDM5_9STRA (Glycine--tRNA ligase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDM5_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.800e-40
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    4 RDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            RD+H    LAHYA+ACTDI F+FPFG  EL G+AARG YDLTQH E SGK+++YFDE TKER++PHVIEPSLGVDRL LA++ SAY ED
Sbjct:  104 RDIHLGDGLAHYARACTDIEFRFPFGTQELMGIAARGNYDLTQHSEGSGKTLDYFDEVTKERYIPHVIEPSLGVDRLVLALICSAYRED 192
[Close]
BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A1G3Z6K9_9BACT (Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacterium GWC2_42_7 TaxID=1802430 RepID=A0A1G3Z6K9_9BACT)

HSP 1 Score: 147 bits (371), Expect = 3.600e-40
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            G DVH    LAHY++ACTDITFK+PFG  EL+G+AARGC+DLTQHQEASGKS+EYFDE  K +++PHVIEP++GVDR+FLAI+ SAY ED
Sbjct:  300 GLDVHPKNKLAHYSRACTDITFKYPFGVQELEGIAARGCFDLTQHQEASGKSLEYFDEEKKAKYLPHVIEPAVGVDRIFLAILCSAYDED 389
[Close]
BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Match: A0A1E7FJG2_9STRA (Glycine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJG2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.520e-39
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    7 DVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED 270
            DVHE   LAHYA+ACTDITFKFPFG  EL G+AARG YDLTQH E SGKS+EY+DE TKE+++PH IEPSLGVDRL LA++ SAY ED
Sbjct:  260 DVHEGNKLAHYARACTDITFKFPFGTQELMGIAARGNYDLTQHTEGSGKSLEYYDEETKEKYIPHCIEPSLGVDRLLLAVICSAYAED 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120572.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRJ7_9STRA1.550e-4683.33Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A6U1N9R4_9STRA5.640e-4377.78Glycine--tRNA ligase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YDS6_9STRA4.080e-4276.67Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TM99_9STRA1.750e-4177.78Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3AL73_9EUKA7.900e-4173.86Glycine--tRNA ligase n=1 Tax=Haptolina ericina Tax... [more]
A0A7R9WRX3_9STRA8.900e-4170.00Glycine--tRNA ligase n=1 Tax=Craspedostauros austr... [more]
A0A1J4XFE5_9BACT2.610e-4076.40Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacte... [more]
A0A7S0CDM5_9STRA2.800e-4070.79Glycine--tRNA ligase (Fragment) n=1 Tax=Proboscia ... [more]
A0A1G3Z6K9_9BACT3.600e-4071.11Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacte... [more]
A0A1E7FJG2_9STRA1.520e-3973.86Glycine--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120572contigH-elongata_contig120572:830..1999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score145.6
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog382464.ABSI01000011_gene3153
Preferred nameglyQS
KEGG rclassRC00055,RC00523
KEGG koko:K01880
KEGG ReactionR03654
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494
EggNOG free text desc.Anticodon binding domain
EggNOG OGs2ITMG@203494,46TEV@74201,COG0423@1,COG0423@2
Ec32 ortholog descriptionGlycyl-tRNA Synthetase (C-terminal region)
Ec32 orthologEc-07_006780.1
EC6.1.1.14
COG Functional cat.J
BiGG ReactioniSB619.SA_RS07880
Best tax levelVerrucomicrobiae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.7736044-CDS-H-elongata_contig120572:829..9251622929706.7736044-CDS-H-elongata_contig120572:829..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120572 830..925 +
1691679126.4897301-CDS-H-elongata_contig120572:829..9251691679126.4897301-CDS-H-elongata_contig120572:829..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120572 830..925 +
1622929706.7914133-CDS-H-elongata_contig120572:1825..19991622929706.7914133-CDS-H-elongata_contig120572:1825..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120572 1826..1999 +
1691679126.5160336-CDS-H-elongata_contig120572:1825..19991691679126.5160336-CDS-H-elongata_contig120572:1825..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120572 1826..1999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120572.1578.1prot_H-elongata_contig120572.1578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120572 830..1999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120572.1578.1

>prot_H-elongata_contig120572.1578.1 ID=prot_H-elongata_contig120572.1578.1|Name=mRNA_H-elongata_contig120572.1578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
GRDVHEDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASG
KSMEYFDERTKERFVPHVIEPSLGVDRLFLAIMVSAYHED
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mRNA from alignment at H-elongata_contig120572:830..1999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120572.1578.1 ID=mRNA_H-elongata_contig120572.1578.1|Name=mRNA_H-elongata_contig120572.1578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig120572:830..1999+ (Himanthalia elongata Himel1 dioecious)
GGAAGGGATGTCCACGAGGACGGCTCCCTGGCTCACTACGCGAAGGCCTG
CACAGACATCACCTTCAAGTTTCCGTTCGGAGAGTCAGAGCTGCAGGTCT
GTTGGATGTCTGTCTTCGCTATATTTTTATATGGCGTGTGCGCTGCCGAC
CTTTGCTTCCCAATTTTCCTTCCCTAGTCCAGGAAATCCTCTCGTTTGGG
TGTGGGTGTGGTCGTGGGCATGAACGTGCGTTGAACTGTCATATATATAT
ATATATATATATATATATATTTACCACTGTCTGTCTTCTGCCTTCTTACC
TTTTAGGAAAGACGTTGTGATGGCTTTTCCTTTTATCCTAGCTGGTATAC
GACCGCCCAACGCCAGCTGCTGAGAGAGGACCTGGGGTGGGGTGCATCTT
CTCGTGACCTGTGACCTTTCAGTTTGTTTCAGGGTTATGATCTCGATGAC
CCTAGATGACCCTAGGGGTAGAGCATCGACCCAACCAACGTAGATTTTAC
TCTGCGCCCGCCCATCCTGAAGAGGCTTTTTTTTTGTCGATTTCACCGCC
CGACCGACCCCGAATACATCAGTAACGAAATAATGTTCCCATCCGACTCA
CATCCCACCCAACCCCAACTTTTCTCTTTAACAGCGTTGGAAGAATCTCG
TCCAAGTCTAAGTCCAAGAACCACCTTTATATTTTATTTTATTTTATTTG
GAAATAGTATGCCTTGCAACTGTGGAATCAATAAAAAACATGTGGAATTT
TTTTTTTTCCCTTCCGAACGGCCGCGGTGTGTGTGGGGGGAGGCGTTCTC
TCTCCCTGCATAAGCAAGGTACTGTACCTTTTGTGTGTGTGTGTATATAT
TTATTAAGTTACACATAACCTCGCGCAATCCGGCCCTGTAATTTACTCAT
TCTATGCTATTGCATGTCCCCCCCCTGGGATTACTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTGATGCTGCTGTACTCTTAAGCGCAGGGTG
TCGCGGCGCGAGGTTGCTACGACCTGACCCAGCACCAGGAGGCAAGCGGC
AAGTCGATGGAGTACTTCGACGAGCGCACCAAGGAGAGGTTTGTGCCGCA
CGTGATCGAGCCGTCTCTCGGAGTCGACCGCTTGTTCCTGGCCATCATGG
TGTCTGCCTACCACGAGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig120572:830..1999+

>mRNA_H-elongata_contig120572.1578.1 ID=mRNA_H-elongata_contig120572.1578.1|Name=mRNA_H-elongata_contig120572.1578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig120572:830..1999+ (Himanthalia elongata Himel1 dioecious)
GGAAGGGATGTCCACGAGGACGGCTCCCTGGCTCACTACGCGAAGGCCTG
CACAGACATCACCTTCAAGTTTCCGTTCGGAGAGTCAGAGCTGCAGGGAA
GGGATGTCCACGAGGACGGCTCCCTGGCTCACTACGCGAAGGCCTGCACA
GACATCACCTTCAAGTTTCCGTTCGGAGAGTCAGAGCTGCAGGGTGTCGC
GGCGCGAGGTTGCTACGACCTGACCCAGCACCAGGAGGCAAGCGGCAAGT
CGATGGAGTACTTCGACGAGCGCACCAAGGAGAGGTTTGTGCCGCACGTG
ATCGAGCCGTCTCTCGGAGTCGACCGCTTGTTCCTGGCCATCATGGTGTC
TGCCTACCACGAGGACGGTGTCGCGGCGCGAGGTTGCTACGACCTGACCC
AGCACCAGGAGGCAAGCGGCAAGTCGATGGAGTACTTCGACGAGCGCACC
AAGGAGAGGTTTGTGCCGCACGTGATCGAGCCGTCTCTCGGAGTCGACCG
CTTGTTCCTGGCCATCATGGTGTCTGCCTACCACGAGGAC
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