mRNA_H-elongata_contig120461.1573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120461.1573.1
Unique NamemRNA_H-elongata_contig120461.1573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.470e-45
Identity = 72/89 (80.90%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            LDTR+VLPWW+ TG+KMFPYLAPVAQQV GNQA A+QVERDFSSC  LL  NRSRIDTYWVEMVMFL+VN+K IPA +DIPMIAAK+IR
Sbjct:  100 LDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 188          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.490e-44
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNI 264
            LDTR++LPWW++TG+K FPYLAPVAQQVFGNQA A+QVERDFS C  LL  NRSR+DTYWVEMVMFL+ NF+HIP  +DIPMIAAK+I
Sbjct:   25 LDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDI 112          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.620e-43
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            LD R+VLPWW+RTG+ +FP+LAPVAQQVFGNQA+ SQVERDFS  GILLAPNRSR+DTYWVE+VMFL  NF HIP L+ IPM+AAKNIR
Sbjct:  187 LDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIR 275          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.980e-41
Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            LDTR+VLPWW+ TG+KMFP LAPVAQQV GNQA A+QVERDFSSC  LL  NRSRIDTYWVEMVMFL+VN+K IPA +DIPMIAAK+IR
Sbjct:  498 LDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 586          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.280e-35
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   49 MFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            MFPYLAPVAQQV GNQA A+QVERDFSSC  LL  NRSRIDTYWVEMVMFL+VN+K IPA +DIPMIAAK+IR
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 73          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.240e-26
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            L   +VL +W  TG+  FP L  VAQQ FG+Q SA+ VERDFS CG+ L PNRSR++ YWVEMVMFL  NFK IP   +IP I +K+IR
Sbjct:  727 LHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIR 815          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.370e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   31 QRTGQKM--FPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            Q+  Q++  F  L   A +V GNQA A+QVERDFSSC  LL  NRSRIDTYWVEMVMFL+VN+K IPA +DIPMIAAK+IR
Sbjct:  209 QQVSQELERFQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIR 289          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.660e-24
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   13 DVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            +VL +W RTG+  FP L  VAQQ FGNQASA+ VERDFS CG+ + PNRSR+D YWVEMVMFL  NF     + +IP I  K+IR
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIR 472          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.080e-23
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            L  RDVL +W+++G+  FP L  VAQQ FG+QA A+Q+ERDFS+ G+L A NR+R+D YWVEMV+FL  NF+ IP   DIP + +K+IR
Sbjct:  382 LQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIR 470          
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.350e-23
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLAPNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR 267
            L   DVL +W + G++MFP L  VAQQ FG+QASA+Q+ERDFS CG+    NRSR + YW+EMVM L  N++ IP  +DIP I +K+IR
Sbjct:  487 LPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIR 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120461.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVT2_9PHAE2.470e-4580.90Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE2.490e-4476.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE8.620e-4377.53Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE8.980e-4179.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE8.280e-3582.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE7.240e-2658.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE1.370e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE5.660e-2460.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE1.080e-2356.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.350e-2355.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120461contigH-elongata_contig120461:423..689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.4159172-CDS-H-elongata_contig120461:422..6891622929706.4159172-CDS-H-elongata_contig120461:422..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120461 423..689 -
1691679126.357315-CDS-H-elongata_contig120461:422..6891691679126.357315-CDS-H-elongata_contig120461:422..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120461 423..689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120461.1573.1prot_H-elongata_contig120461.1573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120461 423..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120461.1573.1

>prot_H-elongata_contig120461.1573.1 ID=prot_H-elongata_contig120461.1573.1|Name=mRNA_H-elongata_contig120461.1573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
LDTRDVLPWWQRTGQKMFPYLAPVAQQVFGNQASASQVERDFSSCGILLA
PNRSRIDTYWVEMVMFLYVNFKHIPALQDIPMIAAKNIR
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mRNA from alignment at H-elongata_contig120461:423..689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120461.1573.1 ID=mRNA_H-elongata_contig120461.1573.1|Name=mRNA_H-elongata_contig120461.1573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig120461:423..689- (Himanthalia elongata Himel1 dioecious)
TTGGATACCCGGGACGTACTGCCCTGGTGGCAACGCACAGGTCAGAAGAT GTTCCCCTACCTCGCACCAGTTGCGCAGCAGGTATTTGGGAACCAGGCAA GTGCCTCGCAGGTCGAGCGCGACTTCAGTAGTTGCGGTATTCTCCTCGCG CCCAACAGGAGCCGCATCGACACCTACTGGGTAGAGATGGTGATGTTCCT CTATGTTAACTTCAAGCACATCCCCGCGTTGCAGGACATTCCCATGATCG CCGCAAAGAATATCCGT
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Coding sequence (CDS) from alignment at H-elongata_contig120461:423..689-

>mRNA_H-elongata_contig120461.1573.1 ID=mRNA_H-elongata_contig120461.1573.1|Name=mRNA_H-elongata_contig120461.1573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig120461:423..689- (Himanthalia elongata Himel1 dioecious)
TTGGATACCCGGGACGTACTGCCCTGGTGGCAACGCACAGGTCAGAAGAT
GTTCCCCTACCTCGCACCAGTTGCGCAGCAGGTATTTGGGAACCAGGCAA
GTGCCTCGCAGGTCGAGCGCGACTTCAGTAGTTGCGGTATTCTCCTCGCG
CCCAACAGGAGCCGCATCGACACCTACTGGGTAGAGATGGTGATGTTCCT
CTATGTTAACTTCAAGCACATCCCCGCGTTGCAGGACATTCCCATGATCG
CCGCAAAGAATATCCGTTTGGATACCCGGGACGTACTGCCCTGGTGGCAA
CGCACAGGTCAGAAGATGTTCCCCTACCTCGCACCAGTTGCGCAGCAGGT
ATTTGGGAACCAGGCAAGTGCCTCGCAGGTCGAGCGCGACTTCAGTAGTT
GCGGTATTCTCCTCGCGCCCAACAGGAGCCGCATCGACACCTACTGGGTA
GAGATGGTGATGTTCCTCTATGTTAACTTCAAGCACATCCCCGCGTTGCA
GGACATTCCCATGATCGCCGCAAAGAATATCCGT
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