mRNA_H-elongata_contig120344.1568.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120344.1568.1
Unique NamemRNA_H-elongata_contig120344.1568.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.150e-19
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   10 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            FPYT+RVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAG+AMG
Sbjct:  448 FPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 494
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S3VD11_9STRA (Polyribonucleotide nucleotidyltransferase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VD11_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    7 KFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            +FPYTIRVESLITES GSSSMASVCGGSLA+MDAG+PV +P+AGIAMG
Sbjct:  611 EFPYTIRVESLITESNGSSSMASVCGGSLALMDAGVPVKAPVAGIAMG 658
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S0CK71_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK71_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.670e-16
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   10 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            FPY+IRVESLITES GSSSMASVCGGSLA++DAG+P+ SP+AGIAMG
Sbjct:   49 FPYSIRVESLITESNGSSSMASVCGGSLALLDAGVPLKSPVAGIAMG 95
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S2KSP8_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSP8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.370e-16
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    7 KFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            +FPYTIRVE+L+TES GSSSMASVCGG LA+MDAG+P+SSPIAGIAMG
Sbjct:  231 EFPYTIRVEALVTESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMG 278
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            FPY+IRVESLITESCGSSSMASVCGG +A+MDAG+PV  PIAG+AMG
Sbjct:  374 FPYSIRVESLITESCGSSSMASVCGGCMALMDAGVPVKRPIAGVAMG 420
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: B7G0I4_PHATC (Polyribonucleotide nucleotidyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0I4_PHATC)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   10 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            FPYTIRVESLITES GSSSMASVCGGSLA+MDAG+P+ +P+AGIAMG
Sbjct:  496 FPYTIRVESLITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMG 542
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A6U0G2M6_9STRA (Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0G2M6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.340e-16
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            + +FPY+IRVESLITES GSSSMASVCGGSLA+MDAG+PV  P+AGIAMG
Sbjct:  357 EEEFPYSIRVESLITESHGSSSMASVCGGSLALMDAGVPVKKPVAGIAMG 406
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S4V6X3_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6X3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.510e-16
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            + +FPY+IRVESLITES GSSSMASVCGGSLA+MDAG+P+  P+AGIAMG
Sbjct:   88 EEEFPYSIRVESLITESHGSSSMASVCGGSLALMDAGVPIKKPVAGIAMG 137
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A1E7FE01_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE01_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-15
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            + +FPYTIRVE+L+TES GSSSMASVCGG LA+MDAGIP+ SP+AGIAMG
Sbjct:  489 EEEFPYTIRVEALVTESHGSSSMASVCGGCLALMDAGIPIKSPVAGIAMG 538
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BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: K0QYE1_THAOC (S1 motif domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QYE1_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 1.030e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 150
            FPYTIRVESL+TES GSSSMASVCGG LA+MDAG+P+ SP+AGIAMG
Sbjct:   20 FPYTIRVESLVTESNGSSSMASVCGGCLALMDAGVPIKSPVAGIAMG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU0_ECTSI4.150e-1995.74Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S3VD11_9STRA2.890e-1685.42Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S0CK71_9STRA4.670e-1682.98Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KSP8_9STRA5.370e-1683.33Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A835ZC49_9STRA5.390e-1682.98Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
B7G0I4_PHATC5.390e-1685.11Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A6U0G2M6_9STRA7.340e-1680.00Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=... [more]
A0A7S4V6X3_9STRA9.510e-1678.00Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A1E7FE01_9STRA1.010e-1578.00Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
K0QYE1_THAOC1.030e-1582.98S1 motif domain-containing protein n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120344contigH-elongata_contig120344:198..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D8LGU0
Preferred namePNP1
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
GOsGO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006139,GO:0006396,GO:0006401,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008299,GO:0008408,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010322,GO:0010323,GO:0010467,GO:0010563,GO:0010565,GO:0010675,GO:0010677,GO:0015994,GO:0015995,GO:0016036,GO:0016070,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016122,GO:0016123,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019747,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031425,GO:0031667,GO:0031668,GO:0031669,GO:0033013,GO:0033014,GO:0033554,GO:0034641,GO:0034655,GO:0042214,GO:0042440,GO:0042594,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045827,GO:0045833,GO:0045912,GO:0045936,GO:0046148,GO:0046246,GO:0046483,GO:0046700,GO:0046890,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051186,GO:0051188,GO:0051716,GO:0062012,GO:0062014,GO:0065007,GO:0071071,GO:0071072,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903725,GO:1903726
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.607719-CDS-H-elongata_contig120344:197..3531622929705.607719-CDS-H-elongata_contig120344:197..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120344 198..353 -
1691679125.9718142-CDS-H-elongata_contig120344:197..3531691679125.9718142-CDS-H-elongata_contig120344:197..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120344 198..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120344.1568.1prot_H-elongata_contig120344.1568.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120344 198..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120344.1568.1

>prot_H-elongata_contig120344.1568.1 ID=prot_H-elongata_contig120344.1568.1|Name=mRNA_H-elongata_contig120344.1568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG
SV
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mRNA from alignment at H-elongata_contig120344:198..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120344.1568.1 ID=mRNA_H-elongata_contig120344.1568.1|Name=mRNA_H-elongata_contig120344.1568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig120344:198..353- (Himanthalia elongata Himel1 dioecious)
CAGCGGAAATTTCCGTACACGATCCGAGTCGAGAGTCTCATTACGGAGAG
CTGCGGATCTAGCAGCATGGCGAGCGTTTGCGGTGGCAGCCTGGCTATGA
TGGATGCTGGTATTCCCGTGTCCTCGCCCATCGCGGGGATTGCCATGGGG
TCAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig120344:198..353-

>mRNA_H-elongata_contig120344.1568.1 ID=mRNA_H-elongata_contig120344.1568.1|Name=mRNA_H-elongata_contig120344.1568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig120344:198..353- (Himanthalia elongata Himel1 dioecious)
CAGCGGAAATTTCCGTACACGATCCGAGTCGAGAGTCTCATTACGGAGAG
CTGCGGATCTAGCAGCATGGCGAGCGTTTGCGGTGGCAGCCTGGCTATGA
TGGATGCTGGTATTCCCGTGTCCTCGCCCATCGCGGGGATTGCCATGGGG
TCAGTCCAGCGGAAATTTCCGTACACGATCCGAGTCGAGAGTCTCATTAC
GGAGAGCTGCGGATCTAGCAGCATGGCGAGCGTTTGCGGTGGCAGCCTGG
CTATGATGGATGCTGGTATTCCCGTGTCCTCGCCCATCGCGGGGATTGCC
ATGGGGTCAGTC
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