prot_H-elongata_contig120344.1568.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig120344.1568.1
Unique Nameprot_H-elongata_contig120344.1568.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.150e-19
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    4 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            FPYT+RVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAG+AMG
Sbjct:  448 FPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 494          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S3VD11_9STRA (Polyribonucleotide nucleotidyltransferase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VD11_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    3 KFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            +FPYTIRVESLITES GSSSMASVCGGSLA+MDAG+PV +P+AGIAMG
Sbjct:  611 EFPYTIRVESLITESNGSSSMASVCGGSLALMDAGVPVKAPVAGIAMG 658          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S0CK71_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK71_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.670e-16
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    4 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            FPY+IRVESLITES GSSSMASVCGGSLA++DAG+P+ SP+AGIAMG
Sbjct:   49 FPYSIRVESLITESNGSSSMASVCGGSLALLDAGVPLKSPVAGIAMG 95          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S2KSP8_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSP8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.370e-16
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    3 KFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            +FPYTIRVE+L+TES GSSSMASVCGG LA+MDAG+P+SSPIAGIAMG
Sbjct:  231 EFPYTIRVEALVTESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMG 278          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    4 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            FPY+IRVESLITESCGSSSMASVCGG +A+MDAG+PV  PIAG+AMG
Sbjct:  374 FPYSIRVESLITESCGSSSMASVCGGCMALMDAGVPVKRPIAGVAMG 420          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: B7G0I4_PHATC (Polyribonucleotide nucleotidyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0I4_PHATC)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    4 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            FPYTIRVESLITES GSSSMASVCGGSLA+MDAG+P+ +P+AGIAMG
Sbjct:  496 FPYTIRVESLITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMG 542          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A6U0G2M6_9STRA (Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0G2M6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.340e-16
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            + +FPY+IRVESLITES GSSSMASVCGGSLA+MDAG+PV  P+AGIAMG
Sbjct:  357 EEEFPYSIRVESLITESHGSSSMASVCGGSLALMDAGVPVKKPVAGIAMG 406          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A7S4V6X3_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6X3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.510e-16
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            + +FPY+IRVESLITES GSSSMASVCGGSLA+MDAG+P+  P+AGIAMG
Sbjct:   88 EEEFPYSIRVESLITESHGSSSMASVCGGSLALMDAGVPIKKPVAGIAMG 137          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: A0A1E7FE01_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE01_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-15
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    1 QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            + +FPYTIRVE+L+TES GSSSMASVCGG LA+MDAGIP+ SP+AGIAMG
Sbjct:  489 EEEFPYTIRVEALVTESHGSSSMASVCGGCLALMDAGIPIKSPVAGIAMG 538          
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Match: K0QYE1_THAOC (S1 motif domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QYE1_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 1.030e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    4 FPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG 50
            FPYTIRVESL+TES GSSSMASVCGG LA+MDAG+P+ SP+AGIAMG
Sbjct:   20 FPYTIRVESLVTESNGSSSMASVCGGCLALMDAGVPIKSPVAGIAMG 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120344.1568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU0_ECTSI4.150e-1995.74Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S3VD11_9STRA2.890e-1685.42Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S0CK71_9STRA4.670e-1682.98Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KSP8_9STRA5.370e-1683.33Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A835ZC49_9STRA5.390e-1682.98Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
B7G0I4_PHATC5.390e-1685.11Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A6U0G2M6_9STRA7.340e-1680.00Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=... [more]
A0A7S4V6X3_9STRA9.510e-1678.00Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A1E7FE01_9STRA1.010e-1578.00Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
K0QYE1_THAOC1.030e-1582.98S1 motif domain-containing protein n=1 Tax=Thalass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..52
e-value: 8.0E-19
score: 69.8
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 3..39
e-value: 1.0E-4
score: 22.8
IPR012162Polyribonucleotide nucleotidyltransferasePANTHERPTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEcoord: 2..52
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 3..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120344contigH-elongata_contig120344:198..353 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120344.1568.1mRNA_H-elongata_contig120344.1568.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig120344 198..353 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig120344.1568.1 ID=prot_H-elongata_contig120344.1568.1|Name=mRNA_H-elongata_contig120344.1568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
QRKFPYTIRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGIAMG
SV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
IPR012162PNPase
IPR020568Ribosomal_S5_D2-typ_fold