mRNA_H-elongata_contig120272.1565.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120272.1565.1
Unique NamemRNA_H-elongata_contig120272.1565.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.420e-68
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAKTPSKK+AKAPKKAG KK+ NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.600e-62
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAG-GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAK PSKKAAKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.990e-62
Identity = 101/118 (85.59%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   46 SKMAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            S MAKTPSKK+AKAPKKAG K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 STMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 194 bits (492), Expect = 8.150e-62
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAKTPSKKAAKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.740e-61
Identity = 101/118 (85.59%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAG--GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAKTPSKK+AKAPKK G  GK +  KRIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.100e-60
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAG-GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAK PSKKAAKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.400e-60
Identity = 102/121 (84.30%), Postives = 113/121 (93.39%), Query Frame = 1 
Query:   37 STLSKMAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            ST+  MAKTPSKKAA APKKAGGK ++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    3 STIVTMAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (474), Expect = 4.810e-59
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:   52 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAKTPSK++AKAPKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.530e-58
Identity = 99/122 (81.15%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:   43 LSKMAKTPSKKA-AKAPKKA--GGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            +S MAKTPSKKA +KA KK   G KK++ KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   32 ISTMAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
[Close]
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (463), Expect = 2.590e-57
Identity = 98/120 (81.67%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:   52 MAKTPSKKA-AKAPKKAGG---KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 399
            MAKTPSK+A AKA KKA     KK++ KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI2.420e-6895.69Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA1.600e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA6.990e-6285.59Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
H2B_OLILU8.150e-6286.21Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA2.740e-6185.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA1.100e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U6DWX5_9STRA2.400e-6084.30Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B7FWR8_PHATC4.810e-5983.62Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2P1D6_9STRA4.530e-5881.15Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
B8BX20_THAPS2.590e-5781.67Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120272contigH-elongata_contig120272:752..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2.2e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.3288906-UTR-H-elongata_contig120272:751..8021622929705.3288906-UTR-H-elongata_contig120272:751..802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120272 752..802 +
1691679125.8413508-UTR-H-elongata_contig120272:751..8021691679125.8413508-UTR-H-elongata_contig120272:751..802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120272 752..802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.344029-CDS-H-elongata_contig120272:802..11531622929705.344029-CDS-H-elongata_contig120272:802..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120272 803..1153 +
1691679125.8507452-CDS-H-elongata_contig120272:802..11531691679125.8507452-CDS-H-elongata_contig120272:802..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120272 803..1153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120272.1565.1prot_H-elongata_contig120272.1565.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120272 803..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120272.1565.1

>prot_H-elongata_contig120272.1565.1 ID=prot_H-elongata_contig120272.1565.1|Name=mRNA_H-elongata_contig120272.1565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at H-elongata_contig120272:752..1153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120272.1565.1 ID=mRNA_H-elongata_contig120272.1565.1|Name=mRNA_H-elongata_contig120272.1565.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig120272:752..1153+ (Himanthalia elongata Himel1 dioecious)
CACTCATTCTAAGCCTTTACCCTAACGCCCGACGCGTCTACACTGAGCAA
GATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTG
GTGGCAAGAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTACATC
TACAAGGTGCTCAAGCAAGTTCACCCGGACACAGGTATCTCCAAACGTGG
AATGTCCATCATGAATTCCTTCATCAACGACGTGTTCGAGCGCGTGGCCG
GCGAGTCAGGCAAGCTCACCCGCTATAACAAGAAGGCAACCCTTTCTTCA
CGTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAA
ACACGCCGTTTCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig120272:752..1153+

>mRNA_H-elongata_contig120272.1565.1 ID=mRNA_H-elongata_contig120272.1565.1|Name=mRNA_H-elongata_contig120272.1565.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig120272:752..1153+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTGG
TGGCAAGAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAAGTTCACCCGGACACAGGTATCTCCAAACGTGGA
ATGTCCATCATGAATTCCTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCAGGCAAGCTCACCCGCTATAACAAGAAGGCAACCCTTTCTTCAC
GTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAAA
CACGCCGTTTCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTTG
AATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTG
GTGGCAAGAAGAAGGCAAACAAGAGAATCGAGTCTTACTCTTCGTACATC
TACAAGGTGCTCAAGCAAGTTCACCCGGACACAGGTATCTCCAAACGTGG
AATGTCCATCATGAATTCCTTCATCAACGACGTGTTCGAGCGCGTGGCCG
GCGAGTCAGGCAAGCTCACCCGCTATAACAAGAAGGCAACCCTTTCTTCA
CGTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAA
ACACGCCGTTTCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCTT
GA
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