prot_H-elongata_contig120272.1565.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig120272.1565.1
Unique Name	prot_H-elongata_contig120272.1565.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	117

Homology

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.480e-68
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+AKAPKKAG KK+ NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.320e-62
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAG-GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKKAAKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 192 bits (489), Expect = 1.180e-61
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKAAKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.440e-61
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+AKAPKKAG K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.970e-61
Identity = 101/118 (85.59%), Postives = 111/118 (94.07%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAG--GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+AKAPKK G  GK +  KRIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.580e-60
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAG-GKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKKAAKAPKKA  GKKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.010e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKAA APKKAGG K++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGG-KRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 186 bits (471), Expect = 6.980e-59
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 0

Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSK++AKAPKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.670e-57
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MAKTPSKKA-AKAPKKA--GGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKA +KA KK   G KK++ KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153

[Close]

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Match: A0A835YLA9_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.320e-57
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 0

Query:    6 SKKAAKAPKKA-GGKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 115
            SKKAAKAPKKA  GKK+  KR+ESYSSYIYKVLKQVHPDTGISKRGMS+MNSFINDVFER+A E+G+LTRYN + TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:   28 SKKAAKAPKKAVEGKKRRPKRVESYSSYIYKVLKQVHPDTGISKRGMSVMNSFINDVFERIASEAGRLTRYNNRQTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 138

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot

BLAST of mRNA_H-elongata_contig120272.1565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI8_ECTSI	3.480e-68	95.69	Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A836CJ22_9STRA	2.320e-62	89.74	Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
H2B_OLILU	1.180e-61	86.21	Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830...	[more]
A0A6U0X3U9_9STRA	1.440e-61	86.21	Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R...	[more]
A0A485K2U0_9STRA	3.970e-61	85.59	Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep...	[more]
A0A836CJT3_9STRA	1.580e-60	89.74	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A6U6DWX5_9STRA	2.010e-59	86.21	Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ...	[more]
B7FWR8_PHATC	6.980e-59	83.62	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A7S2P1D6_9STRA	2.670e-57	82.35	Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675...	[more]
A0A835YLA9_9STRA	3.320e-57	86.49	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 29..47 score: 84.56 coord: 100..113 score: 92.65 coord: 87..100 score: 90.61 coord: 70..87 score: 56.83 coord: 48..68 score: 67.66
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 19..115 e-value: 3.2E-69 score: 246.0
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 3..116
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 84..106
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..92 e-value: 6.5E-17 score: 62.1
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..116 e-value: 1.3E-56 score: 192.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..116
None	No IPR available	PANTHER	PTHR23428:SF196	HISTONE H2B TYPE 1-N	coord: 3..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig120272	contig	H-elongata_contig120272:803..1153 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig120272.1565.1	mRNA_H-elongata_contig120272.1565.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig120272 752..1153 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig120272.1565.1 ID=prot_H-elongata_contig120272.1565.1|Name=mRNA_H-elongata_contig120272.1565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MAKTPSKKAAKAPKKAGGKKKANKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold