mRNA_H-elongata_contig120202.1559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120202.1559.1
Unique NamemRNA_H-elongata_contig120202.1559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: A0A6H5KG45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG45_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 4.280e-43
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAECFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQACKGRRRK 318
            +EVDVVFEEDVGFLGALRDLRR AKCPV+LTAE +R+++A LSC I ++P+PRL ELEACLTAVAAAE L+VS  ALRALA++H+GDLRACL TLQACKGRRR+
Sbjct:  113 EEVDVVFEEDVGFLGALRDLRRAAKCPVILTAETYRREYAPLSCNIWHLPRPRLAELEACLTAVAAAERLDVSLGALRALAQYHMGDLRACLFTLQACKGRRRQ 216
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.320e-43
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAECFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQACKGRRRK 318
            +EVDVVFEEDVGFLGALRDLRR AKCPV+LTAE +R+++A LSC I ++P+PRL ELEACLTAVAAAE L+VS  ALRALA++H+GDLRACL TLQACKGRRR+
Sbjct: 1025 EEVDVVFEEDVGFLGALRDLRRAAKCPVILTAETYRREYAPLSCNIWHLPRPRLAELEACLTAVAAAERLDVSLGALRALAQYHMGDLRACLFTLQACKGRRRQ 1128
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: A0A7S0HMQ2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HMQ2_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.110e-9
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:   10 EVDVVFEEDVGFLGALRDLRRGAKCPVVLTAECFRQDF---AQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            EVDVVF++DVGF  AL  L R +KCP+VLT     ++    A L  + L   +P L  L   L+A+    G+ +S   +R L +++  DLR  L TLQ
Sbjct:   22 EVDVVFDDDVGFYAALLKLARQSKCPIVLTCHAVPRELRRNAALVQQCLPWSRPVLPPLAGYLSAICMVRGVRISEHEIRLLCEYYACDLRKLLHTLQ 119
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: A0A0K9P3W6_ZOSMR (AAA domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P3W6_ZOSMR)

HSP 1 Score: 62.0 bits (149), Expect = 6.000e-9
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAECFRQDFAQ-LSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQA-CKGRR 312
            ++VD +F+ED GF+GA+  L   +K P++LTA C      Q L  E++    P   E+  CLT +  AEG+ +S+L L+     +  D+R  ++ LQ  C+G R
Sbjct:  568 EDVDTIFDEDRGFIGAILQLAETSKRPIILTANCREPVLPQVLEKEVVEFSLPSYDEILPCLTKICTAEGVLISSLLLKKSIVLNQADIRKTIMQLQFWCQGNR 671
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: UPI000F60106B (ATPase family AAA domain-containing protein 5 isoform X3 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F60106B)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-8
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+F+EDVGFL A++      K PVVLT     FR+ F+    EI++ P P  V++   L  VA AE + +    +R L +   GD+R CLL LQ
Sbjct:  451 EEVDVIFDEDVGFLAAIKTFMTTTKRPVVLTTNDPSFRERFSCSLEEIIFKP-PSAVDVCTYLQLVALAENVRLELDDVRGLLRLSGGDVRRCLLQLQ 547
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: UPI000F5DF894 (ATPase family AAA domain-containing protein 5 isoform X1 n=3 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5DF894)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-8
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+F+EDVGFL A++      K PVVLT     FR+ F+    EI++ P P  V++   L  VA AE + +    +R L +   GD+R CLL LQ
Sbjct:  451 EEVDVIFDEDVGFLAAIKTFMTTTKRPVVLTTNDPSFRERFSCSLEEIIFKP-PSAVDVCTYLQLVALAENVRLELDDVRGLLRLSGGDVRRCLLQLQ 547
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: A0A4U5U2R0_COLLU (ATPase family AAA domain-containing protein 5 n=5 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5U2R0_COLLU)

HSP 1 Score: 59.7 bits (143), Expect = 3.820e-8
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+F+EDVGFL A++      K PVVLT     FR+ F+    EI++ P P  V++   L  VA AE + +    +R L     GD+R CLL LQ
Sbjct:  472 EEVDVIFDEDVGFLAAVKTFMTTTKRPVVLTTNDPSFRERFSCSLEEIIFKP-PSAVDVCTYLQLVALAENVRLDLDDVRGLVGLSGGDVRRCLLQLQ 568
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: UPI00094E5D85 (ATPase family AAA domain-containing protein 5-like isoform X1 n=3 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E5D85)

HSP 1 Score: 58.5 bits (140), Expect = 9.680e-8
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+FEEDVGFL A++      K PVVLT     FR+ F+  S E +    P  V + + L  +  AEG+ +    +R+L     GD+R CLL LQ
Sbjct:  438 EEVDVIFEEDVGFLAAVKTFMMTTKRPVVLTTNDSTFRERFSS-SLEEVVFKTPSAVNVCSYLQLLCLAEGVKMEIDDVRSLITLARGDVRRCLLQLQ 534
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: UPI00097E00C8 (ATPase family AAA domain-containing protein 5-like isoform X1 n=3 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097E00C8)

HSP 1 Score: 57.8 bits (138), Expect = 1.820e-7
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+F++DVGFLGA++      K PV+LT     FR+ F+    EIL+   P +V + + L  V  +E + +    +R L +   GD+R CLL LQ
Sbjct:  537 EEVDVIFDDDVGFLGAIKSFMATTKRPVILTTNDPLFRERFSCSLEEILFKT-PSVVNVCSYLQLVCLSENVRLEQDDVRRLLRHTCGDVRRCLLQLQ 633
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BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Match: A0A671UQK2_SPAAU (ATPase family AAA domain-containing protein 5-like n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671UQK2_SPAAU)

HSP 1 Score: 57.0 bits (136), Expect = 3.390e-7
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    7 QEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAE--CFRQDFAQLSCEILYMPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQ 294
            +EVDV+F+ DVGFL A++   +  K PVVLT     FR+ F+    EI++   P  V + + L  VA AE + +    +  L +   GD+R CLL LQ
Sbjct:  530 EEVDVIFDADVGFLSAIKTFMKTTKRPVVLTTNDPTFREKFSCSLVEIIFKT-PSAVNVCSYLQLVALAENVRLELEDVSGLLRLSRGDVRRCLLQLQ 626
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120202.1559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG45_9PHAE4.280e-4376.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI4.320e-4376.92Similar to chromosome fragility associated gene 1 ... [more]
A0A7S0HMQ2_9EUKA3.110e-939.80Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A0K9P3W6_ZOSMR6.000e-935.58AAA domain-containing protein n=1 Tax=Zostera mari... [more]
UPI000F60106B1.060e-841.84ATPase family AAA domain-containing protein 5 isof... [more]
UPI000F5DF8941.080e-841.84ATPase family AAA domain-containing protein 5 isof... [more]
A0A4U5U2R0_COLLU3.820e-841.84ATPase family AAA domain-containing protein 5 n=5 ... [more]
UPI00094E5D859.680e-840.82ATPase family AAA domain-containing protein 5-like... [more]
UPI00097E00C81.820e-738.78ATPase family AAA domain-containing protein 5-like... [more]
A0A671UQK2_SPAAU3.390e-738.78ATPase family AAA domain-containing protein 5-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120202contigH-elongata_contig120202:28..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue8.9e-37
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-13_004570.1
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120202.1559.1prot_H-elongata_contig120202.1559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120202 28..1852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.7942595-CDS-H-elongata_contig120202:27..511622929704.7942595-CDS-H-elongata_contig120202:27..51Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 28..51 -
1691679125.639238-CDS-H-elongata_contig120202:27..511691679125.639238-CDS-H-elongata_contig120202:27..51Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 28..51 -
1622929704.8134868-CDS-H-elongata_contig120202:877..9971622929704.8134868-CDS-H-elongata_contig120202:877..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 878..997 -
1691679125.6499255-CDS-H-elongata_contig120202:877..9971691679125.6499255-CDS-H-elongata_contig120202:877..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 878..997 -
1622929704.8279693-CDS-H-elongata_contig120202:1678..18521622929704.8279693-CDS-H-elongata_contig120202:1678..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 1679..1852 -
1691679125.659631-CDS-H-elongata_contig120202:1678..18521691679125.659631-CDS-H-elongata_contig120202:1678..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120202 1679..1852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120202.1559.1

>prot_H-elongata_contig120202.1559.1 ID=prot_H-elongata_contig120202.1559.1|Name=mRNA_H-elongata_contig120202.1559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
LPQEVDVVFEEDVGFLGALRDLRRGAKCPVVLTAECFRQDFAQLSCEILY
MPKPRLVELEACLTAVAAAEGLNVSALALRALAKFHLGDLRACLLTLQAC
KGRRRK
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mRNA from alignment at H-elongata_contig120202:28..1852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120202.1559.1 ID=mRNA_H-elongata_contig120202.1559.1|Name=mRNA_H-elongata_contig120202.1559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1825bp|location=Sequence derived from alignment at H-elongata_contig120202:28..1852- (Himanthalia elongata Himel1 dioecious)
CTTCCACAGGAAGTCGACGTGGTATTCGAAGAGGACGTGGGTTTCCTAGG
CGCTCTGCGGGATCTAAGGAGAGGGGCCAAATGCCCCGTTGTCCTTACCG
CCGAGTGCTTCAGACAGGACTTCGCTCAGCTGTCCTGCGAAATCCTATAT
ATGCCGAAACCAAGGCTCGTAGAGGTGGGGAATATATAAATATATATTGT
AGGGGGGTTCACAACCGTCGAAGGCATCTGTCTTCCTGGTCTATTAAGCA
TGTTTGATTGGCTGGCGTCCCCCACAATACAACTATCAGAGTATTTTTTC
GTCGCTTTTTCCTTTATTTTTGTCCAGAAGTATATTTTTTACGTACGAAT
TAGGCTGGCGTCCCGAAAATGCGATATTGTTTGTTTCGTGTGTTCTAGGA
GCGTCCTGCAAACACGATCACTTTCCCCCCCCCTCACATTGGATTGTCTG
TTGTTTCCGAAATACAATCACTTTTTTTTTTCTCTCGTTTGATTAAAAGT
CTTTTTGTAGCAGAAAAGATCAGCTGACGTCCCACGAATAAGTTAACTTT
TGTTACCAATCGTGTACATACCATCTTGCCTCGCCCAGACCGTTTTCATT
TATCCCTTTTCTTTACTACGCTATGCGCTAGGCAGACACCGGCCGGGAAC
CGTTAGTGCCCCTCTCGGCTCGACTACACTTTTCTCTCGAGATACATAAA
TTTATTGGATATTTATTCAATGTCGTGAAGGGCTGTGATCGCGCTTCCAC
CTTTTCCCTTTTCCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCGCCTCC
ACTTTTCTTTCCTTCTTGGTCTCGCTGTTCTGTCCTGTTGGGGGTTTTGC
GGTAGTTGGAGGCGTGTTTAACGGCGGTGGCTGCTGCGGAGGGTCTTAAC
GTGTCAGCTCTCGCGCTTCGGGCGCTCGCGAAGTTCCATTTGGGCGACCT
GCGCGCGTGCTTGCTGACGCTCCAGGTGAATCCTCGCGCTTCTAGGCTCG
TTTAGCTTGAATCAGCTTGAGTGTCGAGCCGACGTGGGCGTCTAAATCTA
GTCCTGTTGAAGCGTTTTTCTGTGGTGTTTTTGAGAAGCGGGAGTACAAT
GCGCATATCATGCCTCCTCCTCGATGGTAAAGTAATTTTTATGCAGTGTT
TTGTTTTACGTTAAAAAATATATTTTTTTATTATTATTTTTTGTTTTGGT
CATGACATTACTTTTGGCTGTCTGGTTATGACTTTGTTTTCTATTAATTG
TTTTTCTTCTTTTCGGGTTATATTTTTGTTCTGTTTGTTTTTTCTCGCGT
TTCTTTTAGTCTTTTTTGTTAAGATTTTAGTTCTGGTTTCTAGTTTTTTT
CTAAAACAAACAAACTCATTGAAACCCTTTGAACTTCTAGTCGTCTTCTT
AGCACTGTAAGAGGTGGAATCTTCTTCGCTTGTCTTTTGTTTGCTCTTAT
GTATATTGTGTGTGAAGTTATATTTTCTTTCGGGATTTGTTTTGACTCTT
TTGCTGTTTTTTTAGTGGGTCGGTTTTTTCCCTATTTTCTATTTTTCTAC
TTTTCTTGTTTTTCTTATTTTTCTTTTTTTGTCCTGTTTAAGGATAATAT
TAGCCTGGGGCTTCAGTCCTAGTTATAAAGTAGTTTGATCACGCTCGCAA
CACGAAAAGAGCCCACATGGACGCCGCCTCACCACTCGCCTTACTGTGTA
CCTGCTACTCTGCGGAAAGCTCACCCCTCTCCCGCCTCCACCATATGTAT
TGTGTGTCTTTCTTTTTGTTTCATATATATACTATATATACATCATTTTA
GGCTTGCAAAGGCAGGCGACGCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig120202:28..1852-

>mRNA_H-elongata_contig120202.1559.1 ID=mRNA_H-elongata_contig120202.1559.1|Name=mRNA_H-elongata_contig120202.1559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig120202:28..1852- (Himanthalia elongata Himel1 dioecious)
CTTCCACAGGAAGTCGACGTGGTATTCGAAGAGGACGTGGGTTTCCTAGG
CGCTCTGCGGGATCTAAGGAGAGGGGCCAAATGCCCCGTTGTCCTTACCG
CCGAGTGCTTCAGACAGGACTTCGCTCAGCTGTCCTGCGAAATCCTATAT
ATGCCGAAACCAAGGCTCGTAGAGCTTCCACAGGAAGTCGACGTGGTATT
CGAAGAGGACGTGGGTTTCCTAGGCGCTCTGCGGGATCTAAGGAGAGGGG
CCAAATGCCCCGTTGTCCTTACCGCCGAGTGCTTCAGACAGGACTTCGCT
CAGCTGTCCTGCGAAATCCTATATATGCCGAAACCAAGGCTCGTAGAGTT
GGAGGCGTGTTTAACGGCGGTGGCTGCTGCGGAGGGTCTTAACGTGTCAG
CTCTCGCGCTTCGGGCGCTCGCGAAGTTCCATTTGGGCGACCTGCGCGCG
TGCTTGCTGACGCTCCAGTTGGAGGCGTGTTTAACGGCGGTGGCTGCTGC
GGAGGGTCTTAACGTGTCAGCTCTCGCGCTTCGGGCGCTCGCGAAGTTCC
ATTTGGGCGACCTGCGCGCGTGCTTGCTGACGCTCCAGGCTTGCAAAGGC
AGGCGACGCAAAGCTTGCAAAGGCAGGCGACGCAAA
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